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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070082 ID=TCONS_00070082|Name=TCONS_00070082|organism=Clytia hemisphaerica|type=transcript|length=2026bpRun BLAST on NCBI protein sequence of TCONS_00070082-protein >TCONS_00070082-protein ID=TCONS_00070082-protein|Name=TCONS_00070082-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp MASETITDMKGNIVKMEVDYSETCDKKLPELEEMAKSGKIEDALEALLALRun BLAST on NCBI transcript from alignment at scaffold_513:581942..592113+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070082 ID=TCONS_00070082|Name=TCONS_00070082|organism=Clytia hemisphaerica|type=transcript|length=10172bp|location=Sequence derived from alignment at scaffold_513:581942..592113+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_513:581942..592113+ >TCONS_00070082 ID=TCONS_00070082|Name=TCONS_00070082|organism=Clytia hemisphaerica|type=CDS|length=15147bp|location=Sequence derived from alignment at scaffold_513:581942..592113+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070082 vs. Swiss-Prot (Human)
Match: PSD12 (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3) HSP 1 Score: 543.117 bits (1398), Expect = 0.000e+0 Identity = 271/446 (60.76%), Postives = 362/446 (81.17%), Query Frame = 2
Query: 86 GNIVKMEVDYSETCDKKLPELEEMAKSGKIXXXXXXXXXXXKQTRTAADMFSTSRVLVTVIKICFATKNIXXXXXXXXXXTKRRGQLKQAVTKMVQEACTYVDQIEKKEDQLEFIDTLRTVTSGKIYLELERARITRKLAQMKEADGNIADAATVLQELQVETFGSMERREKVEFILEQMRLCLAKKDYIRTQIISKKISTKFFDDNKEQDLKLKYYQLMIELGHNDGKYLPICKHYRAVFDTPSIQEDETKMKEALRNVVLFIVLSAYDNEQSDLLSRIADEPKLENIMSFKRLIKNFTTHELIHWVRFKELYEVELSQGTEANPATGVFNRTTEQGQKRWDDLKKRVVEHNLRVMAKYYTRITVERMSQLLDLSKEDAEEYLSNLVTSKTVFAKIDRPAGIIVFRPPKDASDTLNDWSRDISELMVLLNKTTHLITKEQMVHQL 1423
G IVKMEVDYS T D++LPE ++AK G++++ +E LL+LEKQTRTA+DM STSR+LV V+K+C+ K +LLNE+++LL+KRR QLKQAV KMVQ+ CTYV++I +L IDTLR VT GKIY+E+ERAR+T+ LA +KE +G++ +AA++LQELQVET+GSME++E+VEFILEQMRLCLA KDYIRTQIISKKI+TKFF + + LKLKYY LMI+L ++G YL ICKHYRA++DTP IQ + K ++AL++VVL+++L+ +DNEQSDL+ RI+ + KLE I +K L+K FTT EL+ W E Y +EL +G+ +PAT VF +TE+G+KRW DLK RVVEHN+R+MAKYYTRIT++RM+QLLDLS +++E +LSNLV +KT+FAK+DR AGII F+ PKD ++ LNDWS+ ++ LM L+NKTTHLI KE+M+H L
Sbjct: 11 GRIVKMEVDYSATVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFG-STEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIHNL 455 The following BLAST results are available for this feature:
BLAST of TCONS_00070082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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