TCONS_00070082-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00070082-protein
Unique Name	TCONS_00070082-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	458

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00070082-protein ID=TCONS_00070082-protein|Name=TCONS_00070082-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
MASETITDMKGNIVKMEVDYSETCDKKLPELEEMAKSGKIEDALEALLAL
EKQTRTAADMFSTSRVLVTVIKICFATKNIELLNEHLLLLTKRRGQLKQA
VTKMVQEACTYVDQIEKKEDQLEFIDTLRTVTSGKIYLELERARITRKLA
QMKEADGNIADAATVLQELQVETFGSMERREKVEFILEQMRLCLAKKDYI
RTQIISKKISTKFFDDNKEQDLKLKYYQLMIELGHNDGKYLPICKHYRAV
FDTPSIQEDETKMKEALRNVVLFIVLSAYDNEQSDLLSRIADEPKLENIM
SFKRLIKNFTTHELIHWVRFKELYEVELSQGTEANPATGVFNRTTEQGQK
RWDDLKKRVVEHNLRVMAKYYTRITVERMSQLLDLSKEDAEEYLSNLVTS
KTVFAKIDRPAGIIVFRPPKDASDTLNDWSRDISELMVLLNKTTHLITKE
QMVHQLLN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043637	XLOC_043637	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00070082	TCONS_00070082	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000717	PCI_dom
IPR011991	WHTH_DNA-bd_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 152..172
None	No IPR available	SMART	SM00753	PINT	coord: 350..436 e-value: 4.1E-18 score: 76.2
IPR000717	Proteasome component (PCI) domain	SMART	SM00088	PINT_4	coord: 350..436 e-value: 4.1E-18 score: 76.2
IPR000717	Proteasome component (PCI) domain	PFAM	PF01399	PCI	coord: 301..417 e-value: 9.1E-20 score: 71.0
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 344..427 e-value: 2.7E-25 score: 87.7
IPR011991	Winged helix-turn-helix DNA-binding domain	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 349..426

Blast

[Close]

BLAST of TCONS_00070082-protein vs. Swiss-Prot (Human)
Match: PSD12 (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3)

HSP 1 Score: 575.474 bits (1482), Expect = 0.000e+0
Identity = 271/446 (60.76%), Postives = 362/446 (81.17%), Query Frame = 0

Query:   11 GNIVKMEVDYSETCDKKLPELEEMAKSGKIEDALEALLALEKQTRTAADMFSTSRVLVTVIKICFATKNIELLNEHLLLLTKRRGQLKQAVTKMVQEACTYVDQIEKKEDQLEFIDTLRTVTSGKIYLELERARITRKLAQMKEADGNIADAATVLQELQVETFGSMERREKVEFILEQMRLCLAKKDYIRTQIISKKISTKFFDDNKEQDLKLKYYQLMIELGHNDGKYLPICKHYRAVFDTPSIQEDETKMKEALRNVVLFIVLSAYDNEQSDLLSRIADEPKLENIMSFKRLIKNFTTHELIHWVRFKELYEVELSQGTEANPATGVFNRTTEQGQKRWDDLKKRVVEHNLRVMAKYYTRITVERMSQLLDLSKEDAEEYLSNLVTSKTVFAKIDRPAGIIVFRPPKDASDTLNDWSRDISELMVLLNKTTHLITKEQMVHQL 456
            G IVKMEVDYS T D++LPE  ++AK G++++ +E LL+LEKQTRTA+DM STSR+LV V+K+C+  K  +LLNE+++LL+KRR QLKQAV KMVQ+ CTYV++I     +L  IDTLR VT GKIY+E+ERAR+T+ LA +KE +G++ +AA++LQELQVET+GSME++E+VEFILEQMRLCLA KDYIRTQIISKKI+TKFF +   + LKLKYY LMI+L  ++G YL ICKHYRA++DTP IQ +  K ++AL++VVL+++L+ +DNEQSDL+ RI+ + KLE I  +K L+K FTT EL+ W    E Y +EL +G+  +PAT VF  +TE+G+KRW DLK RVVEHN+R+MAKYYTRIT++RM+QLLDLS +++E +LSNLV +KT+FAK+DR AGII F+ PKD ++ LNDWS+ ++ LM L+NKTTHLI KE+M+H L
Sbjct:   11 GRIVKMEVDYSATVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFG-STEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIHNL 455

The following BLAST results are available for this feature:

BLAST of TCONS_00070082-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00070082-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PSD12	0.000e+0	60.76	26S proteasome non-ATPase regulatory subunit 12 OS...	[more]

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TCONS_00070082-protein (polypeptide) - C. hemisphaerica