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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070079 ID=TCONS_00070079|Name=TCONS_00070079|organism=Clytia hemisphaerica|type=transcript|length=2481bp
aaatcacaCTTTTaatataagaatggtgtaacaAAAATTCTAGGGCTCAG
TTGCCAAATTCTATGATCGTGGTTTTCTTAAGTAACTTTTTGGCTGAGTT
TCTAAaggaatattcatgatattcctTTAGAGTacattcttataagaaaa
attgtgtaattcgtgttcttataaaatgcgTGTATCATTTGATCAcaata
tttcagaaaataacTCGGCAAAAGTCATCAAGTTATACTCTATTAATCTT
GATCTAGAAATATCAAGTCAAGTCCATTGACAGGATTATTCAGACATCGA
TTCGTGTGAAATGCCATCAGAAACAATGCACCTGGGTTGGATGTATCATG
GACTACCAgCAACATGACAAGATTTGCAACTGTGTATTGGAACCTTGTCC
CTACTTCGAACTTGGATGCGACGTCATGATCGAGAGAGGGCAGATACAAA
CACACAGCCGATCCAATAGTATCATCCACGAAACACTGTTACTGAAAAGC
GTCAAAATGTTTTCACAAGAACGAAAACAATATCAACAACAAATCAAtga
tcaaaacaagaaaatcgaGAGTTTAGAAGCGACTGTGACAACACTGAAAA
AACATgttgaaaaaatcgaaaaagacaccgcgcaaaatattttgacaacA
AAAAGTGAGGCAGCAAAGGCTCAGAAAATGCGAGAAAACATTGTAAACAT
TGAAAAGGATTTCGACCAGCGAAAAGCCGAAGTACAGAATTTGAAAGTTC
ACGCAGAGCAACTAAGTGAATTACATTTAACATTAAGCCTGCCAGatata
agaaatcaaaggtcTGTCAGTAAATTTCTACACAAGAAGGATTACGACAC
CATGAAAGAAGTTAAGAGCTGGAACGCCTTCGTGAAAATAGCAAATCGAA
ACAAAAATTGTAGCTATTTGAACACTTTAAAGGATGCAATTAACAATTAT
AGCGAGACAGTATTTAGCAAAAAATGGCACACCAGACTTTCACAAAAAAC
CCGTTCCCAAACAGAAGGTTGTATGGTATACGGATATCTCAAATTAAGAA
CGTACATCCAAATTGAAAAGATCAGCGTAAAAAAATGCAATGATCGAAAA
GAATTTCAGGAGGCAACTCGAGATGAGAAATGGTGCAGACATTCAGCCTT
CACGGCAAGCTTTGTAGACTTTCCTAATGAAGCTTTACACGTAATGATAC
AGTTTGATTTCAAAACAGTTTCTCTTTTCCATTGggaagatgaagaaaaa
aacagaacAATTCCATTAAACGGAGTACCCGTAATCTTGGGTGATAGAAA
ATTTAGTCTCCATGCAGGAGTCTTGCTCCGTTTTAATTGAAAATCTCAGC
TAGAAAATCATATGAATATCTTAAATTTGGCGAATAATTTATTTTGACGA
GGcggcaattaatttcaacttaGGCGAGAACCAATCATGGCGAATCtggc
aaattttgccaaaataggCAACTTTACCGGGCTATATCTCCGGAACTAAG
AGGTTTCAAGAATTCTCggaaagaaaataaagtttttaggaaAATAGGTT
GGTTTTGAGGCGCCCCTTAACCGACGCAAGACGTCGTTGCaagacttttg
aatttttctttttcaaaaagtgcaaagcCTTGGGATTGATAGGGTTAatt
aaaaatttcgcaatttcagaaatattttcCTAAAACCTTCCTTTTTCGTA
AAGTCAGAGGACCTCGAATGTCACACATTCAACTTGGAAAATCAAGGAAG
AATATCATTTTAGCAAGAAATTTTCCCCATACCTTCTTTGTCCACGTTTG
TTTTGAGTGTTCTTCCGAACTTCTTCCGAATGcgtgatatttttcaaata
tggTAGAGTGAGCAGTGCGTGATTGTCAGGGTCTAATAGAGTGCACGTTG
GAAGACGGTCCTCAACACGTGAGTATAAATCGTGATATCTCTCCGACCTG
ACATGAGAAAAAATGATTGGTTTAATTTAACTGATATGTCGATAGAAAAC
TGTTCAATTTTGTAAGTAATGTTTTAAttgaatggaattttttttttcgt
attttagaatttctttactttgaatgtcaaatatattacacgcttttttt
ataagaatggtttaaatccatttcatcatggatatttttaactttttttg
ggaaaatcatcctaaaatattcttacagcatttttaggttaggatcctaa
ttcagactagatttaacatttagtacatacgtctcaagcataaaattata
ttttgtgaaaggagtaagccttacttggggggtaattgacaatttataat
taaaaatgctctaaaaatggcattcttagcttgagtagcaaaatccCATG
ATGacgtgatattcttagcattattcttaattctttggccattttcatca
tgttcatggacattcttataaagtgtattcttataaaaaaaagcgtgtac
tgattagaaaactttttgatttgaaacttTC Run BLAST on NCBI transcript from alignment at scaffold_513:366846..371459+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070079 ID=TCONS_00070079|Name=TCONS_00070079|organism=Clytia hemisphaerica|type=transcript|length=4614bp|location=Sequence derived from alignment at scaffold_513:366846..371459+ (Clytia hemisphaerica)
aaatcacaCTTTTaatataagaatggtgtaacaAAAATTCTAGGGCTCAG
TTGCCAAATTCTATGATCGTGGTTTTCTTAAGTAACTTTTTGGCTGAGTT
TCTAAaggaatattcatgatattcctTTAGAGTacattcttataagaaaa
attgtgtaattcgtgttcttataaaatgcgTGTATCATTTGATCAcaata
tttcagaaaataacTCGGCAAAAGTCATCAAGTTATACTCTATTAATCTT
GATCTAGAAATATCAAGTCAAGTCCATTGACAGGATTATTCAGACATCGA
TTCGTGTGAAATGCCATCAGAAACAATGCACCTGGGTTGGATGTATCATG
GACTACCAggtgagaaatttcaaattcgagAAGCTCAATTCAAGattcaa
atttacaattttactGATAActaaaaagaatatatttttttctccaaatg
aACCACCCGACTTGACAATCAAGTCAATTAAACGCAATTggatttttcca
gaaaaaaaaccgtgcaccccctgttgaggagtccatttccattccaaggg
ggtatggtttgaaatgcagtggaattccagagcagtagacaaaaatccgt
caaaaatcaGTGGATTTCCATGTGtgtaatgattgaaaatctgtaaaaat
tcggaattctaGAGGGgaatgatcctaaaattgcctggaattccaaggga
NAAGTGGATTTCCATGGGtgtaatgattgaaaatctgtaaaaattcggaa
ttccagaggggaaTGATCCTAaatttgcctggaattccaaggggctAGTT
CAAAAAAGGTTGgagctcctcaacagggggtgtacggtttttttctggaa
aagcccattagtagataggctgctggcatccactaacggattcgtgctcc
ttatagaggatgcttaataagctatatttcctttgtccagagatttgccg
cctttagccgatatacggctaaagacattgtTAGCTGGTGAGTGTGAGTG
AAAATTTtatgtgaggcaccaaatcatagattggaaaatatatttggatt
tagaaaaaaaagtaggcggaaggaagtttgcttgtttttcttcctccttt
cttgttcaatgtggagattttgtaaaagatgagaagttagatttattgaa
tttatgtaccctgatgtatcttctgtgtgcaccaacaaaattttgcttca
taaaactacattttgatgcttgaatttggacttgtatggagtgtataatt
tttttaccacactggattcgttgataaCTTttgctccagataattgtttt
gtcagttctacagatatgttgcagattatttcaaggtattctagttatgt
atatacagtacatttttggGGTCATactgaatatttctgacattagttct
ttatgattctacaaaagggagtgttgttgttccttcaacaaggagcttta
aatattaaaacaaacaaagaacttttcttcagctttggcatttcactttt
taatactgtgtgcctttgtatcttttcaggtacttagcttcaattctttg
aagagattggagtgtttctggttgttttctttcacttttgtgttcatatt
tgtatttttttgagcttcgaccgaagagctgatggaaaagttttgataaa
tttacagaccagatatcgtATAAAAGCAAACGtcgaaaataaatctacag
actgtacataatgcgcccataaaattgttttttatcttttttctgttttg
ttttttctggtctgggattcgaattttgaatgcaaacattccattgaaaa
cgtttgaaacgatcgtttttgcgtacacatcaatgtcaatcaaattatta
actcgcAAAGATctcctttgcgaaccggaaagcggttggtagatcattaa
gcagacctatactaccaggggttttgtagaggtctgcgattcagactaat
taGTAGACGGAATTAAAGACtgaaatttcttcccttttaaaagttttcat
ttttccttcttttacaGCAACATGACAAGATTTGCAACTGTGTATTGGAA
CCTTGTCCCTACTTCGAACTTGGATGCGACGTCATGGTAAGAAGTTCTTT
TTCCAAGTCAAAGATTCGAATTCTAACAGAGCTTTCAAGACGTTCtctac
aataaaaacaaggatctttatacacgttttttttttaaacatccaaaatt
tttgaagccttcggattttcagttttaagcctaaaaatgttctttacatg
ttcttatttttataattttgtgaCCATTCTtactttcctaagaaattgcg
TGTTTTCGAGtccttaaagccttaaaatgttcttaacaatttTGCCATCG
Agcccttatgttcttattttttagtttgttcttataaaaaaaacgtgtac
taaacctttttcttaaatttcactggctgttctaataaaaatgttttagt
gAAGAAGAATATCAGAAAATATCCTTTTTTTAAGCATTTGGGCCTGTTCC
TACAGGAAAAAATAATCTACACTATATTTGAAATTGCTTGTGCTAACATT
CTTCTTTTTAGATCGAGAGAGGGCAGATACAAACACACAGCCGATCCAAT
AGTATCATCCACGAAACACTGTTACTGAAAAGCGTCAAAATGTTTTCACA
AGAACGAAAACAATATCAACAACAAATCAAtgatcaaaacaagaaaatcg
aGAGTTTAGAAGCGACTGTGACAACACTGAAAAAACATgttgaaaaaatc
gaaaaagacaccgcgcaaaatattttgacaacAAAAAGTGAGGCAGCAAA
GGCTCAGAAAATGCGAGAAAACATTGTAAACATTGAAAAGGATTTCGACC
AGCGAAAAGCCGAAGTACAGAATTTGAAAGTTCACGCAGAGCAACTAAGT
GAATTACATTTAACATTAAGCCTGCCAGatataagaaatcaaaggtcTGT
CAGTAAATTTCTACACAAGAAGGATTACGACACCATGAAAGAAGTTAAGA
GCTGGAACGCCTTCGTGAAAATAGCAAATCGAAACAAAAATTGTAGCTAT
TTGAACACTTTAAAGGATGCAATTAACAATTATAGCGAGACAGTATTTAG
CAAAAAATGGCACACCAGACTTTCACAAAAAACCCGTTCCCAAACAGAAG
GTTGTATGGTATACGGATATCTCAAATTAAGAACGTACATCCAAATTGAA
AAGATCAGCGTAAAAAAATGCAATGATCGAAAAGAATTTCAGGAGGCAAC
TCGAGATGAGAAATGGTGCAGACATTCAGCCTTCACGGCAAGCTTTGTAG
ACTTTCCTAATGAAGCTTTACACGTAATGATACAGTTTGATTTCAAAACA
GTTTCTCTTTTCCATTGggaagatgaagaaaaaaacagaacAATTCCATT
AAACGGAGTACCCGTAATCTTGGGTGATAGAAAATTTAGTCTCCATGCAG
GAGTCTTGCTCCGTTTTAATTGAAAATCTCAGCTAGAAAATCATATGAAT
ATCTTAAATTTGGCGAATAATTTATTTTGACGAGGcggcaattaatttca
acttaGGCGAGAACCAATCATGGCGAATCtggcaaattttgccaaaatag
gCAACTTTACCGGGCTATATCTCCGGAACTAAGAGGTTTCAAGAATTCTC
ggaaagaaaataaagtttttaggaaAATAGGTTGGTTTTGAGGCGCCCCT
TAACCGACGCAAGACGTCGTTGCaagacttttgaatttttctttttcaaa
aagtgcaaagcCTTGGGATTGATAGGGTTAattaaaaatttcgcaatttc
agaaatattttcCTAAAACCTTCCTTTTTCGTAAAGTCAGAGGACCTCGA
ATGTCACACATTCAACTTGGAAAATCAAGGAAGAATATCATTTTAGCAAG
AAATTTTCCCCATACCTTCTTTGTCCACGTTTGTTTTGAGTGTTCTTCCG
AACTTCTTCCGAATGcgtgatatttttcaaatatggTAGAGTGAGCAGTG
CGTGATTGTCAGGGTCTAATAGAGTGCACGTTGGAAGACGGTCCTCAACA
CGTGAGTATAAATCGTGATATCTCTCCGACCTGACATGAGAAAAAATGAT
TGGTTTAATTTAACTGATATGTCGATAGAAAACTGTTCAATTTTGTAAGT
AATGTTTTAAttgaatggaattttttttttcgtattttagaatttcttta
ctttgaatgtcaaatatattacacgctttttttataagaatggtttaaat
ccatttcatcatggatatttttaactttttttgggaaaatcatcctaaaa
tattcttacagcatttttaggttaggatcctaattcagactagatttaac
atttagtacatacgtctcaagcataaaattatattttgtgaaaggagtaa
gccttacttggggggtaattgacaatttataattaaaaatgctctaaaaa
tggcattcttagcttgagtagcaaaatccCATGATGacgtgatattctta
gcattattcttaattctttggccattttcatcatgttcatggacattctt
ataaagtgtattcttataaaaaaaagcgtgtactgattagaaaacttttt
gatttgaaacttTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070079-exon-scaffold_513-1491911889:366846..367204 | TCONS_00070079-exon-scaffold_513-1491911889:366846..367204 | Clytia hemisphaerica | exon |
| TCONS_00070079-exon-scaffold_513-1510915933:366846..367204 | TCONS_00070079-exon-scaffold_513-1510915933:366846..367204 | Clytia hemisphaerica | exon |
| TCONS_00070079-exon-scaffold_513-1575043694:366846..367204 | TCONS_00070079-exon-scaffold_513-1575043694:366846..367204 | Clytia hemisphaerica | exon |
| TCONS_00070079-exon-scaffold_513-1491911889:368863..368931 | TCONS_00070079-exon-scaffold_513-1491911889:368863..368931 | Clytia hemisphaerica | exon |
| TCONS_00070079-exon-scaffold_513-1510915933:368863..368931 | TCONS_00070079-exon-scaffold_513-1510915933:368863..368931 | Clytia hemisphaerica | exon |
| TCONS_00070079-exon-scaffold_513-1575043694:368863..368931 | TCONS_00070079-exon-scaffold_513-1575043694:368863..368931 | Clytia hemisphaerica | exon |
| TCONS_00070079-exon-scaffold_513-1491911889:369407..371459 | TCONS_00070079-exon-scaffold_513-1491911889:369407..371459 | Clytia hemisphaerica | exon |
| TCONS_00070079-exon-scaffold_513-1510915933:369407..371459 | TCONS_00070079-exon-scaffold_513-1510915933:369407..371459 | Clytia hemisphaerica | exon |
| TCONS_00070079-exon-scaffold_513-1575043694:369407..371459 | TCONS_00070079-exon-scaffold_513-1575043694:369407..371459 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:366846..371459 + |
Blast
The following BLAST results are available for this feature:
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