TCONS_00070078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070078
Unique NameTCONS_00070078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3115

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070078 ID=TCONS_00070078|Name=TCONS_00070078|organism=Clytia hemisphaerica|type=transcript|length=3115bp
taagaatatcagggtgagatttcgggtttaaaacaataggcctattgttt
agaacaatagaaaaataagaataatgctcaccctcaaacaaagtacacta
ttcttataaaaaaaaaagcgtgtaaacaGTTAAATAAAGGAAAGTCACCT
TGCCAACGTTATTTGTAATTTGAGGTTTATAAATgagatttcaaaaatgc
aaACACAGCGggtaaaaccaaacctacaaaTACGGGGGTTAGATAAAATG
CTCGATCAAAGAATAATATCATTAAAATACTGTATTGCTGCAAAGAATCC
TTTTCAGTTCTGACCCCCGTGAACATTTAAGGTACTTTAAAAGCCACGTC
TAGAACACTAGAAAGAACGTTTTTTATGTTTTAGTCGAAACTTTTGTTCG
CATGCAAGAGAGAAGAGAGAGAGTGGAAAAAAAGGAGACGGCGGCATAGA
GACTATTTTGTATAATTATACAAAACATTAGAATAGCTTTTCATTAATAT
GAGTTCAAATAAGCAAGATATACTACAAGGAGAGCGTTGTACTACACTAG
GTGCGTGCGCAGTGGATAACACTAAATGTTCAATATGCCTAGCACAAATT
GACCGAGGTTCAAAGTCCAATAAATGTTCACACTGTATCAAAAAGATGAA
TTCGATACCGACTGGTTTTCAATTCGAAACTGACGGAGAAGAGAAGAAGG
AATTTGAATGCCCGATTTGTTTGGGTATCATAAGAGATGCAACCGAACTA
CCATGTCACCATTTGATGTGTTTGGCCTGTCTTGAACATTACGAAAAcga
agaaaaagagaaagtcAAAGGAAATGGAGAAGACGAGAAGACAGCGGTGT
ATTTATGCAGTATTTGTCAGAAACCATATCAGCCGAAAGATAAATATCAA
GTCAAGTCCATTGACAGGATTATTCAGACATCGATTCGTGTGAAATGCCA
TCAGAAACAATGCACCTGGGTTGGATGTATCATGGACTACCAgCAACATG
ACAAGATTTGCAACTGTGTATTGGAACCTTGTCCCTACTTCGAACTTGGA
TGCGACGTCATGATCGAGAGAGGGCAGATACAAACACACAGCCGATCCAA
TAGTATCATCCACGAAACACTGTTACTGAAAAGCGTCAAAATGTTTTCAC
AAGAACGAAAACAATATCAACAACAAATCAAtgatcaaaacaagaaaatc
gaGAGTTTAGAAGCGACTGTGACAACACTGAAAAAACATgttgaaaaaat
cgaaaaagacaccgcgcaaaatattttgacaacAAAAAGTGAGGCAGCAA
AGGCTCAGAAAATGCGAGAAAACATTGTAAACATTGAAAAGGATTTCGAC
CAGCGAAAAGCCGAAGTACAGAATTTGAAAGTTCACGCAGAGCAACTAAG
TGAATTACATTTAACATTAAGCCTGCCAGatataagaaatcaaaggtcTG
TCAGTAAATTTCTACACAAGAAGGATTACGACACCATGAAAGAAGTTAAG
AGCTGGAACGCCTTCGTGAAAATAGCAAATCGAAACAAAAATTGTAGCTA
TTTGAACACTTTAAAGGATGCAATTAACAATTATAGCGAGACAGTATTTA
GCAAAAAATGGCACACCAGACTTTCACAAAAAACCCGTTCCCAAACAGAA
GGTTGTATGGTATACGGATATCTCAAATTAAGAACGTACATCCAAATTGA
AAAGATCAGCGTAAAAAAATGCAATGATCGAAAAGAATTTCAGGAGGCAA
CTCGAGATGAGAAATGGTGCAGACATTCAGCCTTCACGGCAAGCTTTGTA
GACTTTCCTAATGAAGCTTTACACGTAATGATACAGTTTGATTTCAAAAC
AGTTTCTCTTTTCCATTGggaagatgaagaaaaaaacagaacAATTCCAT
TAAACGGAGTACCCGTAATCTTGGGTGATAGAAAATTTAGTCTCCATGCA
GGAGTCTTGCTCCGTTTTAATTGAAAATCTCAGCTAGAAAATCATATGAA
TATCTTAAATTTGGCGAATAATTTATTTTGACGAGGcggcaattaatttc
aacttaGGCGAGAACCAATCATGGCGAATCtggcaaattttgccaaaata
ggCAACTTTACCGGGCTATATCTCCGGAACTAAGAGGTTTCAAGAATTCT
CggaaagaaaataaagtttttaggaaAATAGGTTGGTTTTGAGGCGCCCC
TTAACCGACGCAAGACGTCGTTGCaagacttttgaatttttctttttcaa
aaagtgcaaagcCTTGGGATTGATAGGGTTAattaaaaatttcgcaattt
cagaaatattttcCTAAAACCTTCCTTTTTCGTAAAGTCAGAGGACCTCG
AATGTCACACATTCAACTTGGAAAATCAAGGAAGAATATCATTTTAGCAA
GAAATTTTCCCCATACCTTCTTTGTCCACGTTTGTTTTGAGTGTTCTTCC
GAACTTCTTCCGAATGcgtgatatttttcaaatatggTAGAGTGAGCAGT
GCGTGATTGTCAGGGTCTAATAGAGTGCACGTTGGAAGACGGTCCTCAAC
ACGTGAGTATAAATCGTGATATCTCTCCGACCTGACATGAGAAAAAATGA
TTGGTTTAATTTAACTGATATGTCGATAGAAAACTGTTCAATTTTGTAAG
TAATGTTTTAAttgaatggaattttttttttcgtattttagaatttcttt
actttgaatgtcaaatatattacacgctttttttataagaatggtttaaa
tccatttcatcatggatatttttaactttttttgggaaaatcatcctaaa
atattcttacagcatttttaggttaggatcctaattcagactagatttaa
catttagtacatacgtctcaagcataaaattatattttgtgaaaggagta
agccttacttggggggtaattgacaatttataattaaaaatgctctaaaa
atggcattcttagcttgagtagcaaaatccCATGATGacgtgatattctt
agcattattcttaattctttggccattttcatcatgttcatggacattct
tataaagtgtattcttataaaaaaaagcgtgtactgattagaaaactttt
tgatttgaaacttTC
Run BLAST on NCBI

protein sequence of TCONS_00070078-protein

>TCONS_00070078-protein ID=TCONS_00070078-protein|Name=TCONS_00070078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp
MSSNKQDILQGERCTTLGACAVDNTKCSICLAQIDRGSKSNKCSHCIKKM
NSIPTGFQFETDGEEKKEFECPICLGIIRDATELPCHHLMCLACLEHYEN
EEKEKVKGNGEDEKTAVYLCSICQKPYQPKDKYQVKSIDRIIQTSIRVKC
HQKQCTWVGCIMDYQQHDKICNCVLEPCPYFELGCDVMIERGQIQTHSRS
NSIIHETLLLKSVKMFSQERKQYQQQINDQNKKIESLEATVTTLKKHVEK
IEKDTAQNILTTKSEAAKAQKMRENIVNIEKDFDQRKAEVQNLKVHAEQL
SELHLTLSLPDIRNQRSVSKFLHKKDYDTMKEVKSWNAFVKIANRNKNCS
YLNTLKDAINNYSETVFSKKWHTRLSQKTRSQTEGCMVYGYLKLRTYIQI
EKISVKKCNDRKEFQEATRDEKWCRHSAFTASFVDFPNEALHVMIQFDFK
TVSLFHWEDEEKNRTIPLNGVPVILGDRKFSLHAGVLLRFN
Run BLAST on NCBI

transcript from alignment at scaffold_513:365382..371459+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070078 ID=TCONS_00070078|Name=TCONS_00070078|organism=Clytia hemisphaerica|type=transcript|length=6078bp|location=Sequence derived from alignment at scaffold_513:365382..371459+ (Clytia hemisphaerica)
taagaatatcagggtgagatttcgggtttaaaacaataggcctattgttt agaacaatagaaaaataagaataatgctcaccctcaaacaaagtacacta ttcttataaaaaaaaaagcgtgtaaacaGTTAAATAAAGGAAAGTCACCT TGCCAACGTTATTTGTAATTTGAGGTTTATAAATgagatttcaaaaatgc aaACACAGCGggtaaaaccaaacctacaaaTACGGGGGTTAGATAAAATG CTCGATCAAAGAATAATATCATTAAAATACTGTATTGCTGCAAAGAATCC TTTTCAGTTCTGACCCCCGTGAACATTTAAGGTACTTTAAAAGCCACGTC TAGAACACTAGAAAGAACGTTTTTTATGTTTTAGTCGAAACTTTTGTTCG CATGCAAGAGAGAAGAGAGAGAGTGGAAAAAAAGGAGACGGCGGCATAGA GACTATTTTGTATAATTATACAAAACATTAGAATAGCTTTTCATTAATAT GAGTTCAAATAAGCAAGATATACTACAAGGAGAGCGTTGTACTACACTAG GTGCGTGCGCAGTGGATAACACTAAATGTTCAATATGCCTAGCACAAATT GACCGAGGTTCAAAGTCCAATAAATGTTCACACTGTATCAAAAAGATGAA TTCGATACCGACTGGTTTTCAATTCGAAACTGACGGAGAAGAGAAGAAGG AATTTGAATGCCCGATTTGTTTGGGTAAGTAGAAAGTTGAACATTATTTA AGAGAATATTCGATATTGTGTACAGTGAATTCATTAACTCATACATATAT CTAGTTTAAAGTAGAGATCGAATCGCGGGCTCCCTTTTTGCGATCAGTTT GCTAACCTTTCCAAAAGGTGTGAGTCACTTCTTTCGTTTGAAAAACTTAG CTCCTGAATCGTTATTAACAAACGATTTCTCACTGAATAATATCATcctg tacacatttttttataagcaacttcaATTTCAGGGTCTGGGCTGGGGTTG CAAAGCATTCTAtcttattttctgaaaaaatatcGATGCATAGGTTCAAA GGCTTCTATTTTACGAGAGGCTCAagccttagcaacctggttgcttataa aaaatgtgtttgGTATGAAAGTTTGAGTATGCAACTTACTTTAACTTGTT TTCTTCACTCAAACAAGTACATTAATTAGTCAGATAAGCAAGAGTGAGGT TGAGCCAATAACCTTACAAACAGAAAGCAACCACTAATCTTGACATCCAA cgaattttatcattttattcaGGTATCATAAGAGATGCAACCGAACTACC ATGTCACCATTTGATGTGTTTGGCCTGTCTTGAACATTACGAAAAcgaag aaaaagagaaagtcAAAGGAAATGGAGAAGACGAGAAGACAGCGGTGTAT TTATGCAGTATTTGTCAGAAACCATATCAGCCGAAAGATGTAAgacatca aaaaaagattttttaaatcacaCTTTTaatataagaatggtgtaacaAAA ATTCTAGGGCTCAGTTGCCAAATTCTATGATCGTGGTTTTCTTAAGTAAC TTTTTGGCTGAGTTTCTAAaggaatattcatgatattcctTTAGAGTaca ttcttataagaaaaattgtgtaattcgtgttcttataaaatgcgTGTATC ATTTGATCAcaatatttcagaaaataacTCGGCAAAAGTCATCAAGTTAT ACTCTATTAATCTTGATCTAGAAATATCAAGTCAAGTCCATTGACAGGAT TATTCAGACATCGATTCGTGTGAAATGCCATCAGAAACAATGCACCTGGG TTGGATGTATCATGGACTACCAggtgagaaatttcaaattcgagAAGCTC AATTCAAGattcaaatttacaattttactGATAActaaaaagaatatatt tttttctccaaatgaACCACCCGACTTGACAATCAAGTCAATTAAACGCA ATTggatttttccagaaaaaaaaccgtgcaccccctgttgaggagtccat ttccattccaagggggtatggtttgaaatgcagtggaattccagagcagt agacaaaaatccgtcaaaaatcaGTGGATTTCCATGTGtgtaatgattga aaatctgtaaaaattcggaattctaGAGGGgaatgatcctaaaattgcct ggaattccaagggaNAAGTGGATTTCCATGGGtgtaatgattgaaaatct gtaaaaattcggaattccagaggggaaTGATCCTAaatttgcctggaatt ccaaggggctAGTTCAAAAAAGGTTGgagctcctcaacagggggtgtacg gtttttttctggaaaagcccattagtagataggctgctggcatccactaa cggattcgtgctccttatagaggatgcttaataagctatatttcctttgt ccagagatttgccgcctttagccgatatacggctaaagacattgtTAGCT GGTGAGTGTGAGTGAAAATTTtatgtgaggcaccaaatcatagattggaa aatatatttggatttagaaaaaaaagtaggcggaaggaagtttgcttgtt tttcttcctcctttcttgttcaatgtggagattttgtaaaagatgagaag ttagatttattgaatttatgtaccctgatgtatcttctgtgtgcaccaac aaaattttgcttcataaaactacattttgatgcttgaatttggacttgta tggagtgtataatttttttaccacactggattcgttgataaCTTttgctc cagataattgttttgtcagttctacagatatgttgcagattatttcaagg tattctagttatgtatatacagtacatttttggGGTCATactgaatattt ctgacattagttctttatgattctacaaaagggagtgttgttgttccttc aacaaggagctttaaatattaaaacaaacaaagaacttttcttcagcttt ggcatttcactttttaatactgtgtgcctttgtatcttttcaggtactta gcttcaattctttgaagagattggagtgtttctggttgttttctttcact tttgtgttcatatttgtatttttttgagcttcgaccgaagagctgatgga aaagttttgataaatttacagaccagatatcgtATAAAAGCAAACGtcga aaataaatctacagactgtacataatgcgcccataaaattgttttttatc ttttttctgttttgttttttctggtctgggattcgaattttgaatgcaaa cattccattgaaaacgtttgaaacgatcgtttttgcgtacacatcaatgt caatcaaattattaactcgcAAAGATctcctttgcgaaccggaaagcggt tggtagatcattaagcagacctatactaccaggggttttgtagaggtctg cgattcagactaattaGTAGACGGAATTAAAGACtgaaatttcttccctt ttaaaagttttcatttttccttcttttacaGCAACATGACAAGATTTGCA ACTGTGTATTGGAACCTTGTCCCTACTTCGAACTTGGATGCGACGTCATG GTAAGAAGTTCTTTTTCCAAGTCAAAGATTCGAATTCTAACAGAGCTTTC AAGACGTTCtctacaataaaaacaaggatctttatacacgtttttttttt aaacatccaaaatttttgaagccttcggattttcagttttaagcctaaaa atgttctttacatgttcttatttttataattttgtgaCCATTCTtacttt cctaagaaattgcgTGTTTTCGAGtccttaaagccttaaaatgttcttaa caatttTGCCATCGAgcccttatgttcttattttttagtttgttcttata aaaaaaacgtgtactaaacctttttcttaaatttcactggctgttctaat aaaaatgttttagtgAAGAAGAATATCAGAAAATATCCTTTTTTTAAGCA TTTGGGCCTGTTCCTACAGGAAAAAATAATCTACACTATATTTGAAATTG CTTGTGCTAACATTCTTCTTTTTAGATCGAGAGAGGGCAGATACAAACAC ACAGCCGATCCAATAGTATCATCCACGAAACACTGTTACTGAAAAGCGTC AAAATGTTTTCACAAGAACGAAAACAATATCAACAACAAATCAAtgatca aaacaagaaaatcgaGAGTTTAGAAGCGACTGTGACAACACTGAAAAAAC ATgttgaaaaaatcgaaaaagacaccgcgcaaaatattttgacaacAAAA AGTGAGGCAGCAAAGGCTCAGAAAATGCGAGAAAACATTGTAAACATTGA AAAGGATTTCGACCAGCGAAAAGCCGAAGTACAGAATTTGAAAGTTCACG CAGAGCAACTAAGTGAATTACATTTAACATTAAGCCTGCCAGatataaga aatcaaaggtcTGTCAGTAAATTTCTACACAAGAAGGATTACGACACCAT GAAAGAAGTTAAGAGCTGGAACGCCTTCGTGAAAATAGCAAATCGAAACA AAAATTGTAGCTATTTGAACACTTTAAAGGATGCAATTAACAATTATAGC GAGACAGTATTTAGCAAAAAATGGCACACCAGACTTTCACAAAAAACCCG TTCCCAAACAGAAGGTTGTATGGTATACGGATATCTCAAATTAAGAACGT ACATCCAAATTGAAAAGATCAGCGTAAAAAAATGCAATGATCGAAAAGAA TTTCAGGAGGCAACTCGAGATGAGAAATGGTGCAGACATTCAGCCTTCAC GGCAAGCTTTGTAGACTTTCCTAATGAAGCTTTACACGTAATGATACAGT TTGATTTCAAAACAGTTTCTCTTTTCCATTGggaagatgaagaaaaaaac agaacAATTCCATTAAACGGAGTACCCGTAATCTTGGGTGATAGAAAATT TAGTCTCCATGCAGGAGTCTTGCTCCGTTTTAATTGAAAATCTCAGCTAG AAAATCATATGAATATCTTAAATTTGGCGAATAATTTATTTTGACGAGGc ggcaattaatttcaacttaGGCGAGAACCAATCATGGCGAATCtggcaaa ttttgccaaaataggCAACTTTACCGGGCTATATCTCCGGAACTAAGAGG TTTCAAGAATTCTCggaaagaaaataaagtttttaggaaAATAGGTTGGT TTTGAGGCGCCCCTTAACCGACGCAAGACGTCGTTGCaagacttttgaat ttttctttttcaaaaagtgcaaagcCTTGGGATTGATAGGGTTAattaaa aatttcgcaatttcagaaatattttcCTAAAACCTTCCTTTTTCGTAAAG TCAGAGGACCTCGAATGTCACACATTCAACTTGGAAAATCAAGGAAGAAT ATCATTTTAGCAAGAAATTTTCCCCATACCTTCTTTGTCCACGTTTGTTT TGAGTGTTCTTCCGAACTTCTTCCGAATGcgtgatatttttcaaatatgg TAGAGTGAGCAGTGCGTGATTGTCAGGGTCTAATAGAGTGCACGTTGGAA GACGGTCCTCAACACGTGAGTATAAATCGTGATATCTCTCCGACCTGACA TGAGAAAAAATGATTGGTTTAATTTAACTGATATGTCGATAGAAAACTGT TCAATTTTGTAAGTAATGTTTTAAttgaatggaattttttttttcgtatt ttagaatttctttactttgaatgtcaaatatattacacgctttttttata agaatggtttaaatccatttcatcatggatatttttaactttttttggga aaatcatcctaaaatattcttacagcatttttaggttaggatcctaattc agactagatttaacatttagtacatacgtctcaagcataaaattatattt tgtgaaaggagtaagccttacttggggggtaattgacaatttataattaa aaatgctctaaaaatggcattcttagcttgagtagcaaaatccCATGATG acgtgatattcttagcattattcttaattctttggccattttcatcatgt tcatggacattcttataaagtgtattcttataaaaaaaagcgtgtactga ttagaaaactttttgatttgaaacttTC

Coding sequence (CDS) from alignment at scaffold_513:365382..371459+

>TCONS_00070078 ID=TCONS_00070078|Name=TCONS_00070078|organism=Clytia hemisphaerica|type=CDS|length=7380bp|location=Sequence derived from alignment at scaffold_513:365382..371459+ (Clytia hemisphaerica)
ATGAGTTCAAATAAGCAAGATATACTACAAGGAGAGCGTTGTACTACACT
AGGTGCGTGCGCAGTGGATAACACTAAATGTTCAATATGCCTAGCACAAA
TTGACCGAGGTTCAAAGTCCAATAAATGTTCACACTGTATCAAAAAGATG
AATTCGATACCGACTGGTTTTCAATTCGAAACTGACGGAGAAGAGAAGAA
GGAATTTGAATGCCCGATTTGTTTGGGTATCATAAGAGATGCAACCGAAC
TACCATGTCACCATTTGATGTGTTTGGCCTGTCTTGAACATTACGAAAAc
gaagaaaaagagaaagtcAAAGGAAATGGAGAAGACGAGAAGACAGCGGT
GTATTTATGCAGTATTTGTCAGAAACCATATCAGCCGAAAGATAAATATC
AAGTCAAGTCCATTGACAGGATTATTCAGACATCGATTCGTGTGAAATGC
CATCAGAAACAATGCACCTGGGTTGGATGTATCATGGACTACCAgCAACA
TGACAAGATTTGCAACTGTGTATTGGAACCTTGTCCCTACTTCGAACTTG
GATGCGACGTCATGATCGAGAGAGGGCAGATACAAACACACAGCCGATCC
AATAGTATCATCCACGAAACACTGTTACTGAAAAGCGTCAAAATGTTTTC
ACAAGAACGAAAACAATATCAACAACAAATCAAtgatcaaaacaagaaaa
tcgaGAGTTTAGAAGCGACTGTGACAACACTGAAAAAACATgttgaaaaa
atcgaaaaagacaccgcgcaaaatattttgacaacAAAAAGTGAGGCAGC
AAAGGCTCAGAAAATGCGAGAAAACATTGTAAACATTGAAAAGGATTTCG
ACCAGCGAAAAGCCGAAGTACAGAATTTGAAAGTTCACGCAGAGCAACTA
AGTGAATTACATTTAACATTAAGCCTGCCAGatataagaaatcaaaggtc
TGTCAGTAAATTTCTACACAAGAAGGATTACGACACCATGAAAGAAGTTA
AGAGCTGGAACGCCTTCGTGAAAATAGCAAATCGAAACAAAAATTGTAGC
TATTTGAACACTTTAAAGGATGCAATTAACAATTATAGCGAGACAGTATT
TAGCAAAAAATGGCACACCAGACTTTCACAAAAAACCCGTTCCCAAACAG
AAGGTTGTATGGTATACGGATATCTCAAATTAAGAACGTACATCCAAATT
GAAAAGATCAGCGTAAAAAAATGCAATGATCGAAAAGAATTTCAGGAGGC
AACTCGAGATGAGAAATGGTGCAGACATTCAGCCTTCACGGCAAGCTTTG
TAGACTTTCCTAATGAAGCTTTACACGTAATGATACAGTTTGATTTCAAA
ACAGTTTCTCTTTTCCATTGggaagatgaagaaaaaaacagaacAATTCC
ATTAAACGGAGTACCCGTAATCTTGGGTGATAGAAAATTTAGTCTCCATG
CAGGAGTCTTGCTCCGTTTTAATTGAATGAGTTCAAATAAGCAAGATATA
CTACAAGGAGAGCGTTGTACTACACTAGGTGCGTGCGCAGTGGATAACAC
TAAATGTTCAATATGCCTAGCACAAATTGACCGAGGTTCAAAGTCCAATA
AATGTTCACACTGTATCAAAAAGATGAATTCGATACCGACTGGTTTTCAA
TTCGAAACTGACGGAGAAGAGAAGAAGGAATTTGAATGCCCGATTTGTTT
GGGTATCATAAGAGATGCAACCGAACTACCATGTCACCATTTGATGTGTT
TGGCCTGTCTTGAACATTACGAAAAcgaagaaaaagagaaagtcAAAGGA
AATGGAGAAGACGAGAAGACAGCGGTGTATTTATGCAGTATTTGTCAGAA
ACCATATCAGCCGAAAGATAAATATCAAGTCAAGTCCATTGACAGGATTA
TTCAGACATCGATTCGTGTGAAATGCCATCAGAAACAATGCACCTGGGTT
GGATGTATCATGGACTACCAgCAACATGACAAGATTTGCAACTGTGTATT
GGAACCTTGTCCCTACTTCGAACTTGGATGCGACGTCATGATCGAGAGAG
GGCAGATACAAACACACAGCCGATCCAATAGTATCATCCACGAAACACTG
TTACTGAAAAGCGTCAAAATGTTTTCACAAGAACGAAAACAATATCAACA
ACAAATCAAtgatcaaaacaagaaaatcgaGAGTTTAGAAGCGACTGTGA
CAACACTGAAAAAACATgttgaaaaaatcgaaaaagacaccgcgcaaaat
attttgacaacAAAAAGTGAGGCAGCAAAGGCTCAGAAAATGCGAGAAAA
CATTGTAAACATTGAAAAGGATTTCGACCAGCGAAAAGCCGAAGTACAGA
ATTTGAAAGTTCACGCAGAGCAACTAAGTGAATTACATTTAACATTAAGC
CTGCCAGatataagaaatcaaaggtcTGTCAGTAAATTTCTACACAAGAA
GGATTACGACACCATGAAAGAAGTTAAGAGCTGGAACGCCTTCGTGAAAA
TAGCAAATCGAAACAAAAATTGTAGCTATTTGAACACTTTAAAGGATGCA
ATTAACAATTATAGCGAGACAGTATTTAGCAAAAAATGGCACACCAGACT
TTCACAAAAAACCCGTTCCCAAACAGAAGGTTGTATGGTATACGGATATC
TCAAATTAAGAACGTACATCCAAATTGAAAAGATCAGCGTAAAAAAATGC
AATGATCGAAAAGAATTTCAGGAGGCAACTCGAGATGAGAAATGGTGCAG
ACATTCAGCCTTCACGGCAAGCTTTGTAGACTTTCCTAATGAAGCTTTAC
ACGTAATGATACAGTTTGATTTCAAAACAGTTTCTCTTTTCCATTGggaa
gatgaagaaaaaaacagaacAATTCCATTAAACGGAGTACCCGTAATCTT
GGGTGATAGAAAATTTAGTCTCCATGCAGGAGTCTTGCTCCGTTTTAATT
GAATGAGTTCAAATAAGCAAGATATACTACAAGGAGAGCGTTGTACTACA
CTAGGTGCGTGCGCAGTGGATAACACTAAATGTTCAATATGCCTAGCACA
AATTGACCGAGGTTCAAAGTCCAATAAATGTTCACACTGTATCAAAAAGA
TGAATTCGATACCGACTGGTTTTCAATTCGAAACTGACGGAGAAGAGAAG
AAGGAATTTGAATGCCCGATTTGTTTGGGTATCATAAGAGATGCAACCGA
ACTACCATGTCACCATTTGATGTGTTTGGCCTGTCTTGAACATTACGAAA
AcgaagaaaaagagaaagtcAAAGGAAATGGAGAAGACGAGAAGACAGCG
GTGTATTTATGCAGTATTTGTCAGAAACCATATCAGCCGAAAGATAAATA
TCAAGTCAAGTCCATTGACAGGATTATTCAGACATCGATTCGTGTGAAAT
GCCATCAGAAACAATGCACCTGGGTTGGATGTATCATGGACTACCAgCAA
CATGACAAGATTTGCAACTGTGTATTGGAACCTTGTCCCTACTTCGAACT
TGGATGCGACGTCATGATCGAGAGAGGGCAGATACAAACACACAGCCGAT
CCAATAGTATCATCCACGAAACACTGTTACTGAAAAGCGTCAAAATGTTT
TCACAAGAACGAAAACAATATCAACAACAAATCAAtgatcaaaacaagaa
aatcgaGAGTTTAGAAGCGACTGTGACAACACTGAAAAAACATgttgaaa
aaatcgaaaaagacaccgcgcaaaatattttgacaacAAAAAGTGAGGCA
GCAAAGGCTCAGAAAATGCGAGAAAACATTGTAAACATTGAAAAGGATTT
CGACCAGCGAAAAGCCGAAGTACAGAATTTGAAAGTTCACGCAGAGCAAC
TAAGTGAATTACATTTAACATTAAGCCTGCCAGatataagaaatcaaagg
tcTGTCAGTAAATTTCTACACAAGAAGGATTACGACACCATGAAAGAAGT
TAAGAGCTGGAACGCCTTCGTGAAAATAGCAAATCGAAACAAAAATTGTA
GCTATTTGAACACTTTAAAGGATGCAATTAACAATTATAGCGAGACAGTA
TTTAGCAAAAAATGGCACACCAGACTTTCACAAAAAACCCGTTCCCAAAC
AGAAGGTTGTATGGTATACGGATATCTCAAATTAAGAACGTACATCCAAA
TTGAAAAGATCAGCGTAAAAAAATGCAATGATCGAAAAGAATTTCAGGAG
GCAACTCGAGATGAGAAATGGTGCAGACATTCAGCCTTCACGGCAAGCTT
TGTAGACTTTCCTAATGAAGCTTTACACGTAATGATACAGTTTGATTTCA
AAACAGTTTCTCTTTTCCATTGggaagatgaagaaaaaaacagaacAATT
CCATTAAACGGAGTACCCGTAATCTTGGGTGATAGAAAATTTAGTCTCCA
TGCAGGAGTCTTGCTCCGTTTTAATTGAATGAGTTCAAATAAGCAAGATA
TACTACAAGGAGAGCGTTGTACTACACTAGGTGCGTGCGCAGTGGATAAC
ACTAAATGTTCAATATGCCTAGCACAAATTGACCGAGGTTCAAAGTCCAA
TAAATGTTCACACTGTATCAAAAAGATGAATTCGATACCGACTGGTTTTC
AATTCGAAACTGACGGAGAAGAGAAGAAGGAATTTGAATGCCCGATTTGT
TTGGGTATCATAAGAGATGCAACCGAACTACCATGTCACCATTTGATGTG
TTTGGCCTGTCTTGAACATTACGAAAAcgaagaaaaagagaaagtcAAAG
GAAATGGAGAAGACGAGAAGACAGCGGTGTATTTATGCAGTATTTGTCAG
AAACCATATCAGCCGAAAGATAAATATCAAGTCAAGTCCATTGACAGGAT
TATTCAGACATCGATTCGTGTGAAATGCCATCAGAAACAATGCACCTGGG
TTGGATGTATCATGGACTACCAgCAACATGACAAGATTTGCAACTGTGTA
TTGGAACCTTGTCCCTACTTCGAACTTGGATGCGACGTCATGATCGAGAG
AGGGCAGATACAAACACACAGCCGATCCAATAGTATCATCCACGAAACAC
TGTTACTGAAAAGCGTCAAAATGTTTTCACAAGAACGAAAACAATATCAA
CAACAAATCAAtgatcaaaacaagaaaatcgaGAGTTTAGAAGCGACTGT
GACAACACTGAAAAAACATgttgaaaaaatcgaaaaagacaccgcgcaaa
atattttgacaacAAAAAGTGAGGCAGCAAAGGCTCAGAAAATGCGAGAA
AACATTGTAAACATTGAAAAGGATTTCGACCAGCGAAAAGCCGAAGTACA
GAATTTGAAAGTTCACGCAGAGCAACTAAGTGAATTACATTTAACATTAA
GCCTGCCAGatataagaaatcaaaggtcTGTCAGTAAATTTCTACACAAG
AAGGATTACGACACCATGAAAGAAGTTAAGAGCTGGAACGCCTTCGTGAA
AATAGCAAATCGAAACAAAAATTGTAGCTATTTGAACACTTTAAAGGATG
CAATTAACAATTATAGCGAGACAGTATTTAGCAAAAAATGGCACACCAGA
CTTTCACAAAAAACCCGTTCCCAAACAGAAGGTTGTATGGTATACGGATA
TCTCAAATTAAGAACGTACATCCAAATTGAAAAGATCAGCGTAAAAAAAT
GCAATGATCGAAAAGAATTTCAGGAGGCAACTCGAGATGAGAAATGGTGC
AGACATTCAGCCTTCACGGCAAGCTTTGTAGACTTTCCTAATGAAGCTTT
ACACGTAATGATACAGTTTGATTTCAAAACAGTTTCTCTTTTCCATTGgg
aagatgaagaaaaaaacagaacAATTCCATTAAACGGAGTACCCGTAATC
TTGGGTGATAGAAAATTTAGTCTCCATGCAGGAGTCTTGCTCCGTTTTAA
TTGAATGAGTTCAAATAAGCAAGATATACTACAAGGAGAGCGTTGTACTA
CACTAGGTGCGTGCGCAGTGGATAACACTAAATGTTCAATATGCCTAGCA
CAAATTGACCGAGGTTCAAAGTCCAATAAATGTTCACACTGTATCAAAAA
GATGAATTCGATACCGACTGGTTTTCAATTCGAAACTGACGGAGAAGAGA
AGAAGGAATTTGAATGCCCGATTTGTTTGGGTATCATAAGAGATGCAACC
GAACTACCATGTCACCATTTGATGTGTTTGGCCTGTCTTGAACATTACGA
AAAcgaagaaaaagagaaagtcAAAGGAAATGGAGAAGACGAGAAGACAG
CGGTGTATTTATGCAGTATTTGTCAGAAACCATATCAGCCGAAAGATAAA
TATCAAGTCAAGTCCATTGACAGGATTATTCAGACATCGATTCGTGTGAA
ATGCCATCAGAAACAATGCACCTGGGTTGGATGTATCATGGACTACCAgC
AACATGACAAGATTTGCAACTGTGTATTGGAACCTTGTCCCTACTTCGAA
CTTGGATGCGACGTCATGATCGAGAGAGGGCAGATACAAACACACAGCCG
ATCCAATAGTATCATCCACGAAACACTGTTACTGAAAAGCGTCAAAATGT
TTTCACAAGAACGAAAACAATATCAACAACAAATCAAtgatcaaaacaag
aaaatcgaGAGTTTAGAAGCGACTGTGACAACACTGAAAAAACATgttga
aaaaatcgaaaaagacaccgcgcaaaatattttgacaacAAAAAGTGAGG
CAGCAAAGGCTCAGAAAATGCGAGAAAACATTGTAAACATTGAAAAGGAT
TTCGACCAGCGAAAAGCCGAAGTACAGAATTTGAAAGTTCACGCAGAGCA
ACTAAGTGAATTACATTTAACATTAAGCCTGCCAGatataagaaatcaaa
ggtcTGTCAGTAAATTTCTACACAAGAAGGATTACGACACCATGAAAGAA
GTTAAGAGCTGGAACGCCTTCGTGAAAATAGCAAATCGAAACAAAAATTG
TAGCTATTTGAACACTTTAAAGGATGCAATTAACAATTATAGCGAGACAG
TATTTAGCAAAAAATGGCACACCAGACTTTCACAAAAAACCCGTTCCCAA
ACAGAAGGTTGTATGGTATACGGATATCTCAAATTAAGAACGTACATCCA
AATTGAAAAGATCAGCGTAAAAAAATGCAATGATCGAAAAGAATTTCAGG
AGGCAACTCGAGATGAGAAATGGTGCAGACATTCAGCCTTCACGGCAAGC
TTTGTAGACTTTCCTAATGAAGCTTTACACGTAATGATACAGTTTGATTT
CAAAACAGTTTCTCTTTTCCATTGggaagatgaagaaaaaaacagaacAA
TTCCATTAAACGGAGTACCCGTAATCTTGGGTGATAGAAAATTTAGTCTC
CATGCAGGAGTCTTGCTCCGTTTTAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043634XLOC_043634Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070078-exon-scaffold_513-1491911889:365382..366105TCONS_00070078-exon-scaffold_513-1491911889:365382..366105Clytia hemisphaericaexon
TCONS_00070078-exon-scaffold_513-1510915933:365382..366105TCONS_00070078-exon-scaffold_513-1510915933:365382..366105Clytia hemisphaericaexon
TCONS_00070078-exon-scaffold_513-1575043694:365382..366105TCONS_00070078-exon-scaffold_513-1575043694:365382..366105Clytia hemisphaericaexon
TCONS_00070078-exon-scaffold_513-1491911889:366654..366820TCONS_00070078-exon-scaffold_513-1491911889:366654..366820Clytia hemisphaericaexon
TCONS_00070078-exon-scaffold_513-1510915933:366654..366820TCONS_00070078-exon-scaffold_513-1510915933:366654..366820Clytia hemisphaericaexon
TCONS_00070078-exon-scaffold_513-1575043694:366654..366820TCONS_00070078-exon-scaffold_513-1575043694:366654..366820Clytia hemisphaericaexon
TCONS_00070078-exon-scaffold_513-1491911889:367103..367204TCONS_00070078-exon-scaffold_513-1491911889:367103..367204Clytia hemisphaericaexon
TCONS_00070078-exon-scaffold_513-1510915933:367103..367204TCONS_00070078-exon-scaffold_513-1510915933:367103..367204Clytia hemisphaericaexon
TCONS_00070078-exon-scaffold_513-1575043694:367103..367204TCONS_00070078-exon-scaffold_513-1575043694:367103..367204Clytia hemisphaericaexon
TCONS_00070078-exon-scaffold_513-1491911889:368863..368931TCONS_00070078-exon-scaffold_513-1491911889:368863..368931Clytia hemisphaericaexon
TCONS_00070078-exon-scaffold_513-1510915933:368863..368931TCONS_00070078-exon-scaffold_513-1510915933:368863..368931Clytia hemisphaericaexon
TCONS_00070078-exon-scaffold_513-1575043694:368863..368931TCONS_00070078-exon-scaffold_513-1575043694:368863..368931Clytia hemisphaericaexon
TCONS_00070078-exon-scaffold_513-1491911889:369407..371459TCONS_00070078-exon-scaffold_513-1491911889:369407..371459Clytia hemisphaericaexon
TCONS_00070078-exon-scaffold_513-1510915933:369407..371459TCONS_00070078-exon-scaffold_513-1510915933:369407..371459Clytia hemisphaericaexon
TCONS_00070078-exon-scaffold_513-1575043694:369407..371459TCONS_00070078-exon-scaffold_513-1575043694:369407..371459Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070078-proteinTCONS_00070078-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:365382..371459 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.126403 0.165424 0.647198 0.272578 0.191 0.138954 1.63048 1.9387 1.88871 1.72348 3.15214 1.77168 10.1221 7.38129 5.5866 9.41799 7.39027 6.32409 6.89964 6.47588 7.27603 7.94394 2.55731 3.3938 7.08917 7.02862 8.09025 6.66789 1.91623 1.48637
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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