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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070075 ID=TCONS_00070075|Name=TCONS_00070075|organism=Clytia hemisphaerica|type=transcript|length=1536bp
GTAAATCACACATTGATGAGCAATCCAAAGAGCTGAAGGAAATACCATCA
AAACTTCGTGAACTACTCGGCCTTCGTCCAGATATGGAGAAATACAACAG
TTTGAAGACAAAGTATGAAGCACTCATCAAATCGAGAGCAGCATACCACA
TAAAGATTAATGATGAAGTCAAACTTAGAGAATTCGACAAGCTTGAATCG
TTCGAGAAAAGCCGACTTAACATCAAATTGCCACAATTCACCGGGTATGA
TTCAAAAATTGACATTTATACTTTTATTGATGAGTTTGATAAACTTCACT
CCGATTCTGTACCCAAGTCACTTCAGCCAGAATTTCTCAAGAACAATTAC
CTCGATAAACAAGCCTTGGCTATTGTTAAAAGTCTTGACAACATCAAAGA
CATATGGGATCGCCTAAAACAAATCTTCGGTGATAAAGAGGTACTTTTAC
AACACAAACTCCACGAACTCATGGAATTGACAAAGAATCCAAAGTTACTG
AAAGATTCAATTAAAATCATAGACTCTCTGAGTAAAGTAACTAATACAAT
GAGAGATCTCATGCAACTTGCTGCAAAACACAATattgaaaatgaacttt
tttatAGTAATGCATTTTCTCAAATCGTCAGCAATCTAGGAGATAGCAGA
ATGATGAGATGGCTGCAACTTTCGTGCCAATCTCCAGAAACTGGGAAGAG
AAAATGGAAGCAAATGATTGATTTCCTTGAAACTGAAATGGCGGTGCATC
AGCAAAAGGCTACCATACAGATTGCGTCCAACCAAGCTCCaaaacaacct
tccaagaaaCAACCATCATCCTTTGGGAATCACTCAAACACTGGTGGTCA
ATCCAATGGCCAATCTGGTCAACAATCAAATGGTCACCCTGGTTATCAAT
CAAATGGGCAATCTGGTGGTCAATCAGCTGGTCAAGCAAATGGTCAATCA
ATCACTGAATGTTTTGTGTGTGGTGCTACTGATCACGTTTAAACCAATGG
TCCAAATGGGACTAAACTTGTCCAATACTTTGCATGCAAGAAGTTTGTGG
ACATGTCACCTGCTGATCGTTTTCAATTTCATCTTACAAATGGTTTTTGC
TTCCAATGTCTCTACCCTGGCGCAAACGTCAACCAAGGAAAACATCGAGA
TGGGAAGTGTCAACATCAGTTCGCTTGCAAAAACTCATCACACAACAGAT
TCCCAAGAACGATGAAGCATGTTCTCGTGTGCGACGAGCACAAAAATGAT
CAACACAACAAAGACGTGCTTGAACACTACAAAGCAAGATGCATCCTGAA
ACAACCACTTCCTACGTATTCAAAGAACATCAGCATCTTCCATTCTATCT
TCAAATCTCAACTCATCAAACCTTCACCAACTGACGATCAACATGACGCA
ATTGTCATCCTTCAACCAATCAGGATTGAAAGTTCCAACTTCACCATTTT
CTACGATAACGGTTGTAGTGATTTTATCAGTCGTTATCAATCCGTGCAAC
GTCTTGGTCCATCAAGAGCAAAACAAGTCTACGATN Run BLAST on NCBI protein sequence of TCONS_00070075-protein >TCONS_00070075-protein ID=TCONS_00070075-protein|Name=TCONS_00070075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
KSHIDEQSKELKEIPSKLRELLGLRPDMEKYNSLKTKYEALIKSRAAYHI
KINDEVKLREFDKLESFEKSRLNIKLPQFTGYDSKIDIYTFIDEFDKLHS
DSVPKSLQPEFLKNNYLDKQALAIVKSLDNIKDIWDRLKQIFGDKEVLLQ
HKLHELMELTKNPKLLKDSIKIIDSLSKVTNTMRDLMQLAAKHNIENELF
YSNAFSQIVSNLGDSRMMRWLQLSCQSPETGKRKWKQMIDFLETEMAVHQ
QKATIQIASNQAPKQPSKKQPSSFGNHSNTGGQSNGQSGQQSNGHPGYQS
NGQSGGQSAGQANGQSITECFVCGATDHV Run BLAST on NCBI transcript from alignment at scaffold_513:294863..296458+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070075 ID=TCONS_00070075|Name=TCONS_00070075|organism=Clytia hemisphaerica|type=transcript|length=1596bp|location=Sequence derived from alignment at scaffold_513:294863..296458+ (Clytia hemisphaerica)
GTAAATCACACATTGATGAGCAATCCAAAGAGCTGAAGGAAATACCATCA
AAACTTCGTGAACTACTCGGCCTTCGTCCAGATATGGAGAAATACAACAG
TTTGAAGACAAAGTATGAAGCACTCATCAAATCGAGAGCAGCATACCACA
TAAAGATTAATGATGAAGTCAAACTTAGAGAATTCGACAAGCTTGAATCG
TTCGAGAAAAGCCGACTTAACATCAAATTGCCACAATTCACCGGGTATGA
TTCAAAAATTGACATTTATACTTTTATTGATGAGTTTGATAAACTTCACT
CCGATTCTGTACCCAAGTCACTTCAGCCAGAATTTCTCAAGAACAATTAC
CTCGATAAACAAGCCTTGGCTATTGTTAAAAGTCTTGACAACATCAAAGA
CATATGGGATCGCCTAAAACAAATCTTCGGTGATAAAGAGGTACTTTTAC
AACACAAACTCCACGAACTCATGGAATTGACAAAGAATCCAAAGTTACTG
AAAGATTCAATTAAAATCATAGACTCTCTGAGTAAAGTAACTAATACAAT
GAGAGATCTCATGCAACTTGCTGCAAAACACAATattgaaaatgaacttt
tttatAGTAATGCATTTTCTCAAATCGTCAGCAATCTAGGAGATAGCAGA
ATGATGAGATGGCTGCAACTTTCGTGCCAATCTCCAGAAACTGGGAAGAG
AAAATGGAAGCAAATGATTGATTTCCTTGAAACTGAAATGGCGGTGCATC
AGCAAAAGGCTACCATACAGATTGCGTCCAACCAAGCTCCaaaacaacct
tccaagaaaCAACCATCATCCTTTGGGAATCACTCAAACACTGGTGGTCA
ATCCAATGGCCAATCTGGTCAACAATCAAATGGACAATCTGGTGGTCAAT
CAACTGGCCAATCAACTGGCCAATCAGGTCAACAATCAAATGGTCACCCT
GGTTATCAATCAAATGGGCAATCTGGTGGTCAATCAGCTGGTCAAGCAAA
TGGTCAATCAATCACTGAATGTTTTGTGTGTGGTGCTACTGATCACGTTT
AAACCAATGGTCCAAATGGGACTAAACTTGTCCAATACTTTGCATGCAAG
AAGTTTGTGGACATGTCACCTGCTGATCGTTTTCAATTTCATCTTACAAA
TGGTTTTTGCTTCCAATGTCTCTACCCTGGCGCAAACGTCAACCAAGGAA
AACATCGAGATGGGAAGTGTCAACATCAGTTCGCTTGCAAAAACTCATCA
CACAACAGATTCCCAAGAACGATGAAGCATGTTCTCGTGTGCGACGAGCA
CAAAAATGATCAACACAACAAAGACGTGCTTGAACACTACAAAGCAAGAT
GCATCCTGAAACAACCACTTCCTACGTATTCAAAGAACATCAGCATCTTC
CATTCTATCTTCAAATCTCAACTCATCAAACCTTCACCAACTGACGATCA
ACATGACGCAATTGTCATCCTTCAACCAATCAGGATTGAAAGTTCCAACT
TCACCATTTTCTACGATAACGGTTGTAGTGATTTTATCAGTCGTTATCAA
TCCGTGCAACGTCTTGGTCCATCAAGAGCAAAACAAGTCTACGATN Coding sequence (CDS) from alignment at scaffold_513:294863..296458+ >TCONS_00070075 ID=TCONS_00070075|Name=TCONS_00070075|organism=Clytia hemisphaerica|type=CDS|length=1980bp|location=Sequence derived from alignment at scaffold_513:294863..296458+ (Clytia hemisphaerica)
AAATCACACATTGATGAGCAATCCAAAGAGCTGAAGGAAATACCATCAAA
ACTTCGTGAACTACTCGGCCTTCGTCCAGATATGGAGAAATACAACAGTT
TGAAGACAAAGTATGAAGCACTCATCAAATCGAGAGCAGCATACCACATA
AAGATTAATGATGAAGTCAAACTTAGAGAATTCGACAAGCTTGAATCGTT
CGAGAAAAGCCGACTTAACATCAAATTGCCACAATTCACCGGGTATGATT
CAAAAATTGACATTTATACTTTTATTGATGAGTTTGATAAACTTCACTCC
GATTCTGTACCCAAGTCACTTCAGCCAGAATTTCTCAAGAACAATTACCT
CGATAAACAAGCCTTGGCTATTGTTAAAAGTCTTGACAACATCAAAGACA
TATGGGATCGCCTAAAACAAATCTTCGGTGATAAAGAGGTACTTTTACAA
CACAAACTCCACGAACTCATGGAATTGACAAAGAATCCAAAGTTACTGAA
AGATTCAATTAAAATCATAGACTCTCTGAGTAAAGTAACTAATACAATGA
GAGATCTCATGCAACTTGCTGCAAAACACAATattgaaaatgaacttttt
tatAGTAATGCATTTTCTCAAATCGTCAGCAATCTAGGAGATAGCAGAAT
GATGAGATGGCTGCAACTTTCGTGCCAATCTCCAGAAACTGGGAAGAGAA
AATGGAAGCAAATGATTGATTTCCTTGAAACTGAAATGGCGGTGCATCAG
CAAAAGGCTACCATACAGATTGCGTCCAACCAAGCTCCaaaacaaccttc
caagaaaCAACCATCATCCTTTGGGAATCACTCAAACACTGGTGGTCAAT
CCAATGGCCAATCTGGTCAACAATCAAATGGTCACCCTGGTTATCAATCA
AATGGGCAATCTGGTGGTCAATCAGCTGGTCAAGCAAATGGTCAATCAAT
CACTGAATGTTTTGTGTGTGGTGCTACTGATCACGTTTAAAAATCACACA
TTGATGAGCAATCCAAAGAGCTGAAGGAAATACCATCAAAACTTCGTGAA
CTACTCGGCCTTCGTCCAGATATGGAGAAATACAACAGTTTGAAGACAAA
GTATGAAGCACTCATCAAATCGAGAGCAGCATACCACATAAAGATTAATG
ATGAAGTCAAACTTAGAGAATTCGACAAGCTTGAATCGTTCGAGAAAAGC
CGACTTAACATCAAATTGCCACAATTCACCGGGTATGATTCAAAAATTGA
CATTTATACTTTTATTGATGAGTTTGATAAACTTCACTCCGATTCTGTAC
CCAAGTCACTTCAGCCAGAATTTCTCAAGAACAATTACCTCGATAAACAA
GCCTTGGCTATTGTTAAAAGTCTTGACAACATCAAAGACATATGGGATCG
CCTAAAACAAATCTTCGGTGATAAAGAGGTACTTTTACAACACAAACTCC
ACGAACTCATGGAATTGACAAAGAATCCAAAGTTACTGAAAGATTCAATT
AAAATCATAGACTCTCTGAGTAAAGTAACTAATACAATGAGAGATCTCAT
GCAACTTGCTGCAAAACACAATattgaaaatgaacttttttatAGTAATG
CATTTTCTCAAATCGTCAGCAATCTAGGAGATAGCAGAATGATGAGATGG
CTGCAACTTTCGTGCCAATCTCCAGAAACTGGGAAGAGAAAATGGAAGCA
AATGATTGATTTCCTTGAAACTGAAATGGCGGTGCATCAGCAAAAGGCTA
CCATACAGATTGCGTCCAACCAAGCTCCaaaacaaccttccaagaaaCAA
CCATCATCCTTTGGGAATCACTCAAACACTGGTGGTCAATCCAATGGCCA
ATCTGGTCAACAATCAAATGGTCACCCTGGTTATCAATCAAATGGGCAAT
CTGGTGGTCAATCAGCTGGTCAAGCAAATGGTCAATCAATCACTGAATGT
TTTGTGTGTGGTGCTACTGATCACGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070075-exon-scaffold_513-1491911889:294863..295729 | TCONS_00070075-exon-scaffold_513-1491911889:294863..295729 | Clytia hemisphaerica | exon |
| TCONS_00070075-exon-scaffold_513-1510915933:294863..295729 | TCONS_00070075-exon-scaffold_513-1510915933:294863..295729 | Clytia hemisphaerica | exon |
| TCONS_00070075-exon-scaffold_513-1575043694:294863..295729 | TCONS_00070075-exon-scaffold_513-1575043694:294863..295729 | Clytia hemisphaerica | exon |
| TCONS_00070075-exon-scaffold_513-1491911889:295790..296458 | TCONS_00070075-exon-scaffold_513-1491911889:295790..296458 | Clytia hemisphaerica | exon |
| TCONS_00070075-exon-scaffold_513-1510915933:295790..296458 | TCONS_00070075-exon-scaffold_513-1510915933:295790..296458 | Clytia hemisphaerica | exon |
| TCONS_00070075-exon-scaffold_513-1575043694:295790..296458 | TCONS_00070075-exon-scaffold_513-1575043694:295790..296458 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:294863..296458 + |
Blast
The following BLAST results are available for this feature:
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