TCONS_00070072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070072
Unique NameTCONS_00070072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1755

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070072 ID=TCONS_00070072|Name=TCONS_00070072|organism=Clytia hemisphaerica|type=transcript|length=1755bp
TACAGTGTGGTATATGTCTCACATCCATGAAAGGTGATGGTCCTCAAAGG
CCATTTGTATTGCATTGTGGACCTGTGTTTTGCAAAAGCTGTATAACTTT
ATGGTTTGATCAATGGTGTCACTGTCCAGCTTGCAAATCACCTGGCAGAA
GAACAACTCCATTATATGTGGATACATCTTTCTTGGAAGCAATAGAGCGT
ATGACTGCAACTATAAAGCAGctaatgaaagaaaaagagCAACTGGAGAT
CCAAATTGAAGAATTGTTCATGCAAATTGTCTGCCTTGATGCAGATAAAG
AGGAGTTGGAgaagaaacaaatgaaaaactgaagagtaattaaatttttg
catCCTTTTGTATTATGACTAGAAATGTTAAAACATTTTGTAaatatatg
tattttttttgtcttgTGTTAAACAGTGTCATGTTTCTTTGTCTTCTGAA
AACCACATTGAACTTTTTTGTATCCAGATCGCTTATCGGAtagaatgatt
tcaaaaataaatgaaaGTCAAACTGACTTTAGAAGATTTCACTTTTAATT
TCAGTCATAATTGGTAATTATAACTAAACttcactttcttttattttaaa
tggaTTTACTAAATAGTAGAAATCAATACTTGATTACTGAATTATACGAA
AAATTTGGAGAAATCATGTACATTTTCCAGCCAGCATCTACATTTTGCTT
CATAGAAGTCTTGGGGAAGCCACCACAGGACGAATGGGAACTTAAACCAT
TTGTTACCAAGGGAAGGAACATCACCGACTCCTTGAAGGGCACGTTAAAT
GTTAGAAAAATTGTTACAGACTTTATTATTCCtcaagaaaaatgtaaaat
atgttccaaaaaacttttgttgaatGGTGATTACAAGATTGCAATTGGCT
ATTCTTAAGACAGATCAAATAAACTTAGGAGGTTTACAAGCAGGTGCAAA
TTTTGTAACCTCACAGATTTTGGAACATTTTATTCAAGAGCTGGAAAACG
AATTCTAAATTCAGAATTCTTGCAAAGTAGATTGCTCTTGAGTACAGAGG
ATACAGCAGTATCAATTCAAATGTTGCAAAAATACGAGTGGGAGCTAGTC
ATCAATCACATGTCACTCCGTGCAAAATGTGAAATCTTCAACAACTCACT
GAGATATCACTTGCTGCCCAAAGAAATCAACACCCCAAAGAGACAAAGGT
ATTCATTAACAGCAAGTCCTATTAACTTTGACAAGAtaatataaaaaaca
aatggTTAATTGGGAATTGAACTTTTAAGCAATCATGATGGATTCGAGGA
ATATTTTAGCTAGATATCAAAAAAGCTTTTGACAACTGCGGAAACTAATT
AAATCCACAGATATTAGTTCTCATGAAAATATGATTATTTAAAAAAgcat
tgaaattttaaaaattgtaaGTTGTGACaacctgtgaaaatttgaattga
acaATTTAAACAATATTAATGCCTTATATCTTACCAATTTATAACATCAA
AAAACGCACATAAAGATGAAAGGAAGCAACTTGATAGACGTAGGTTTGAA
GATGCTTTTATACTGTATGCAGTGGGAAAACTAAGCACCAAGTATGACAT
CAAACTGGATGACCAATCCATTTCAAACAGAAACAATCTACTTGACAGTG
TTACTGAGCAAATATATCAAAAGTTTGTGACAAAATGGATTGCTCATAAA
TGTGACATTCCTGGTTGCAAAAATGTATTGGTGATTGATGGAGACATGAA
GGCAT
Run BLAST on NCBI

protein sequence of TCONS_00070072-protein

>TCONS_00070072-protein ID=TCONS_00070072-protein|Name=TCONS_00070072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
QCGICLTSMKGDGPQRPFVLHCGPVFCKSCITLWFDQWCHCPACKSPGRR
TTPLYVDTSFLEAIERMTATIKQLMKEKEQLEIQIEELFMQIVCLDADKE
ELEKKQMKN
Run BLAST on NCBI

transcript from alignment at scaffold_513:197107..199585+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070072 ID=TCONS_00070072|Name=TCONS_00070072|organism=Clytia hemisphaerica|type=transcript|length=2479bp|location=Sequence derived from alignment at scaffold_513:197107..199585+ (Clytia hemisphaerica)
TACAGTGTGGTATATGTCTCACATCCATGAAAGGTGATGGTCCTCAAAGG
CCATTTGTATTGCATTGTGGACCTGTGTTTTGCAAAAGGTATATAGTAAA
TCTTAGAGATATGTGATATTTTTCACCtcactttttcaaaaacagTCTGC
AGTTCAATTATATTAGATGAATCAGAATTAAATTTATATTGGAATCGTAC
TTTCTTCAATAACTTTTCAATTTAGAACAATgtagaagattttgattttt
aatcttTATGGATCATGCTGCTTTTAAGAacgaatttttggaaattttac
ttcCAATGCAAATTCCTTTTACTCAAAAGATTTTCAAGTGTGTCTCAGTC
ATTTGCATTTAAAGTGTAAATTAATTTCCAGCTGTATAACTTTATGGTTT
GATCAATGGTGTCACTGTCCAGCTTGCAAATCACCTGGCAGAAGAACAAC
TCCATTATATGTGGATACATCTTTCTTGGAAGCAATAGAGCGGTATGATC
ATCTTATTAAATTTAAAAGTTCTGTTGTTTCAATACTTGAGAGAAATTAA
CTTAGTCTTTAGTCTCTGATAGAGACACCTACTGGGTATAACACAAATAA
CGACGGATAATGAGTGTAACTATATTATTTTCCCAGCAATTAAACAATTT
CCTAATTATctttaaaatattgttttcagTATGACTGCAACTATAAAGCA
GctaatgaaagaaaaagagCAACTGGAGATCCAAATTGAAGAATTGTTCA
TGCAAATTGTCTGCCTTGATGCAGATAAAGAGGAGTTGGAgaagaaacaa
atgaaaaactgaagagtaattaaatttttgcatCCTTTTGTATTATGACT
AGAAATGTTAAAACATTTTGTAaatatatgtattttttttgtcttgTGTT
AAACAGTGTCATGTTTCTTTGTCTTCTGAAAACCACATTGAACTTTTTTG
TATCCAGATCGCTTATCGGAtagaatgatttcaaaaataaatgaaaGTCA
AACTGACTTTAGAAGATTTCACTTTTAATTTCAGTCATAATTGGTAATTA
TAACTAAACttcactttcttttattttaaatggaTTTACTAAATAGTAGA
AATCAATACTTGATTACTGAATTATACGAAAAATTTGGAGAAATCATGTA
CATTTTCCAGCCAGCATCTACATTTTGCTTCATAGAAGTCTTGGGGAAGC
CACCACAGGACGAATGGGAACTTAAACCATTTGTTACCAAGGGAAGGAAC
ATCACCGACTCCTTGAAGGGCACGTTAAATGTTAGAAAAATTGTTACAGA
CTTTATTATTCCtcaagaaaaatgtaaaatatgttccaaaaaacttttgt
tgaatGGTGATTACAAGATTGCAATTGGCTATTCTTAAGACAGATCAAAT
AAACTTAGGAGGTTTACAAGCAGGTGCAAATTTTGTAACCTCACAGATTT
TGGAACATTTTATTCAAGAGCTGGAAAACGAATTCTAAATTCAGAATTCT
TGCAAAGTAGATTGCTCTTGAGTACAGAGGATACAGCAGTATCAATTCAA
ATGTTGCAAAAATACGAGTGGGAGCTAGTCATCAATCACATGTCACTCCG
TGCAAAATGTGAAATCTTCAACAACTCACTGAGATATCACTTGCTGCCCA
AAGAAATCAACACCCCAAAGAGACAAAGGTATTCATTAACAGCAAGTCCT
ATTAACTTTGACAAGAtaatataaaaaacaaatggTTAATTGGGAATTGA
ACTTTTAAGCAATCATGATGGATTCGAGGAATATTTTAGCTAGATATCAA
AAAAGCTTTTGACAACTGCGGAAACTAATTAAATCCACAGATATTAGTTC
TCATGAAAATATGATTATTTAAAAAAgcattgaaattttaaaaattgtaa
GTTGTGACaacctgtgaaaatttgaattgaacaATTTAAACAATATTAAT
GCCTTATATCTTACCAATTTATAACATCAAAAAACGCACATAAAGATGAA
AGGAAGCAACTTGATAGACGTAGGTTTGAAGATGCTTTTATACTGTATGC
AGTGGGAAAACTAAGCACCAAGTATGACATCAAACTGGATGACCAATCCA
TTTCAAACAGAAACAATCTACTTGACAGTGTTACTGAGCAAATATATCAA
AAGTTTGTGACAAAATGGATTGGTGAGTcatgatttcaaaattcatttta
cAGTTTAAAGTGATACCTAGTTTCATGCTGATACTGTTTTTTCCTTTCTA
AATTATCATGACCCAAAGAGTTTTAAAGAAAAGATCTAATGTTGAGAAAA
ATAAAGTAAGTTTTTTCTGAAACCACTTTAAGATTTGCAACTATGAAATT
ACATAACAAGTTCTTTgctatgtttatttttttctttctatcaaTGTTTT
GTTTCATCTCTTCAAGCTCATAAATGTGACATTCCTGGTTGCAAAAATGT
ATTGGTGATTGATGGAGACATGAAGGCAT

Coding sequence (CDS) from alignment at scaffold_513:197107..199585+

>TCONS_00070072 ID=TCONS_00070072|Name=TCONS_00070072|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_513:197107..199585+ (Clytia hemisphaerica)
CAGTGTGGTATATGTCTCACATCCATGAAAGGTGATGGTCCTCAAAGGCC
ATTTGTATTGCATTGTGGACCTGTGTTTTGCAAAAGCTGTATAACTTTAT
GGTTTGATCAATGGTGTCACTGTCCAGCTTGCAAATCACCTGGCAGAAGA
ACAACTCCATTATATGTGGATACATCTTTCTTGGAAGCAATAGAGCGTAT
GACTGCAACTATAAAGCAGctaatgaaagaaaaagagCAACTGGAGATCC
AAATTGAAGAATTGTTCATGCAAATTGTCTGCCTTGATGCAGATAAAGAG
GAGTTGGAgaagaaacaaatgaaaaactgaCAGTGTGGTATATGTCTCAC
ATCCATGAAAGGTGATGGTCCTCAAAGGCCATTTGTATTGCATTGTGGAC
CTGTGTTTTGCAAAAGCTGTATAACTTTATGGTTTGATCAATGGTGTCAC
TGTCCAGCTTGCAAATCACCTGGCAGAAGAACAACTCCATTATATGTGGA
TACATCTTTCTTGGAAGCAATAGAGCGTATGACTGCAACTATAAAGCAGc
taatgaaagaaaaagagCAACTGGAGATCCAAATTGAAGAATTGTTCATG
CAAATTGTCTGCCTTGATGCAGATAAAGAGGAGTTGGAgaagaaacaaat
gaaaaactgaCAGTGTGGTATATGTCTCACATCCATGAAAGGTGATGGTC
CTCAAAGGCCATTTGTATTGCATTGTGGACCTGTGTTTTGCAAAAGCTGT
ATAACTTTATGGTTTGATCAATGGTGTCACTGTCCAGCTTGCAAATCACC
TGGCAGAAGAACAACTCCATTATATGTGGATACATCTTTCTTGGAAGCAA
TAGAGCGTATGACTGCAACTATAAAGCAGctaatgaaagaaaaagagCAA
CTGGAGATCCAAATTGAAGAATTGTTCATGCAAATTGTCTGCCTTGATGC
AGATAAAGAGGAGTTGGAgaagaaacaaatgaaaaactga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043630XLOC_043630Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070072-proteinTCONS_00070072-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070072-exon-scaffold_513-1491911889:197107..197194TCONS_00070072-exon-scaffold_513-1491911889:197107..197194Clytia hemisphaericaexon
TCONS_00070072-exon-scaffold_513-1510915933:197107..197194TCONS_00070072-exon-scaffold_513-1510915933:197107..197194Clytia hemisphaericaexon
TCONS_00070072-exon-scaffold_513-1575043694:197107..197194TCONS_00070072-exon-scaffold_513-1575043694:197107..197194Clytia hemisphaericaexon
TCONS_00070072-exon-scaffold_513-1491911889:197488..197598TCONS_00070072-exon-scaffold_513-1491911889:197488..197598Clytia hemisphaericaexon
TCONS_00070072-exon-scaffold_513-1510915933:197488..197598TCONS_00070072-exon-scaffold_513-1510915933:197488..197598Clytia hemisphaericaexon
TCONS_00070072-exon-scaffold_513-1575043694:197488..197598TCONS_00070072-exon-scaffold_513-1575043694:197488..197598Clytia hemisphaericaexon
TCONS_00070072-exon-scaffold_513-1491911889:197786..199278TCONS_00070072-exon-scaffold_513-1491911889:197786..199278Clytia hemisphaericaexon
TCONS_00070072-exon-scaffold_513-1510915933:197786..199278TCONS_00070072-exon-scaffold_513-1510915933:197786..199278Clytia hemisphaericaexon
TCONS_00070072-exon-scaffold_513-1575043694:197786..199278TCONS_00070072-exon-scaffold_513-1575043694:197786..199278Clytia hemisphaericaexon
TCONS_00070072-exon-scaffold_513-1491911889:199523..199585TCONS_00070072-exon-scaffold_513-1491911889:199523..199585Clytia hemisphaericaexon
TCONS_00070072-exon-scaffold_513-1510915933:199523..199585TCONS_00070072-exon-scaffold_513-1510915933:199523..199585Clytia hemisphaericaexon
TCONS_00070072-exon-scaffold_513-1575043694:199523..199585TCONS_00070072-exon-scaffold_513-1575043694:199523..199585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:197107..199585 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.596032	0.468322	1.82419	1.8095	0.687849	0.905913	0.665156	0.500549	0.817893	0.799752	0.563507	0.691557	0.825355	0.780129	0.824404	1.13459	0.989185	1.11091	0.737464	0.412848	0.855057	0.976521	0.197961	0.199298	1.91325	0.662496	0.235217	0.0495868	0.12098	0.103802
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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