TCONS_00070070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070070
Unique NameTCONS_00070070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070070 ID=TCONS_00070070|Name=TCONS_00070070|organism=Clytia hemisphaerica|type=transcript|length=610bp
TGTAATCAGAATGGCCTGTGTCATTGAAATGATGAACAGGTGCATGCTAA
CTGGAGTTGTTGCAACAGAAGCAAACAATATTCTTAACGATATCGTTAAC
ACTGTTGCAATGCTGGACGGGGCTGCTGAGCACCAAGGGGAAGTGAGCGa
gGAAGCAAGCATCAAAGTGAGCAAAGAAAGTGTCGACCTCGCAATTATTT
TGGTGAACATTTCTTTGAGCCAATCAGCATGTATTCATGGTGAAAAGGAG
GAAGAAATTCCAAATGTTAAAACGAAAAGTCCAGAGGCAAAGAAGAAAAT
GGCAAAACAGCTGATTTTGACAACTTCTGGGCAAGTAGTATCAGCCCCAC
TTTTGACTAAAAACAACAAAGTCACAAAATTGGCTCCTAAAGGTCATACA
CAGGCACAATATCTTGCAGCAATTTTCCGTCAGCTGGAAAGTGAAGGTTT
TGGTACGGTCAAAGTTAGAGTTGCAAACAACGGGCATAATATACTTTACT
TCTAAAAGTCAACGTATGCAGACGACATGAAGGCTCCATTAGAAGCATTA
GGAATTTCTGTGGAGCAATACAGGGGCATCTTTGAAGTAAAAAACCTTGA
AAGCGAAGCT
Run BLAST on NCBI

protein sequence of TCONS_00070070-protein

>TCONS_00070070-protein ID=TCONS_00070070-protein|Name=TCONS_00070070-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
VIRMACVIEMMNRCMLTGVVATEANNILNDIVNTVAMLDGAAEHQGEVSE
EASIKVSKESVDLAIILVNISLSQSACIHGEKEEEIPNVKTKSPEAKKKM
AKQLILTTSGQVVSAPLLTKNNKVTKLAPKGHTQAQYLAAIFRQLESEGF
GTVKVRVANNGHNILYF
Run BLAST on NCBI

transcript from alignment at scaffold_513:195088..196673+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070070 ID=TCONS_00070070|Name=TCONS_00070070|organism=Clytia hemisphaerica|type=transcript|length=1586bp|location=Sequence derived from alignment at scaffold_513:195088..196673+ (Clytia hemisphaerica)
TGTAATCAGAATGGCCTGTGTCATTGAAATGATGAACAGGTGCATGCTAA
CTGGAGTTGTTGCAACAGAAGCAAACAATATTCTTAACGATATCGTTAAC
ACTGTTGCAATGCTGGACGGGGCTGCTGAGCACCAAGGGGAAGTGAGCGa
ggtatttcaaaattattttctgtgataaaaaatatttgacttttcagaaa
aatttgtccaaaatGTACCCATGATCATAAATTAAAGtgaagaatttaat
tttgctaaTATTTTCTTAAATACAGGTAATAAAGTGCGAGCGTTAAAGCT
TCTTTTATGACAATTGAGACAGGACTTTCAGGAGTGGGCCAAAAAAGCAA
TTTTAAACAAcccaaatattttttgcaattaGGAAGCAAGCATCAAAGTG
AGCAAAGAAAGTGTCGACCTCGCAATTATTTTGGTGAACATTTCTTTGAG
CCAATCAGGtaattttaattatttaaactatagaattttaaaaatcaatg
cTCTTGAGCAGGCGTCTGAAAAAGAGAcaaaatcatattttatgatattT
CGAGTTAAtggatttgaaaaaatgaactATCTAAGTTTAAAAATTCACCT
CGGTAGTTCTACTACTTAACTACAAGGCTACTATTGTTTATTTAAGCATG
TATTCATGGTGAAAAGGAGGAAGAAATTCCAAATGTTAAAACGAAAAGTC
CAGAGGCAAAGAAGAAAATGGCAAAACAGCTGATTTTGACAACTTCTGGG
CAAGTAGTATCAGCCCCACTTTTGACTAAAAACAACAAAGTCACAAAATT
GGCTCCTAAAGGTCATACACAGGCACAATATCTTGCAGCAATTTTCCGTC
AGCTGGAAAGTGAAGGTTTTGGTACGGTCAAAGTTAGAGTTGCAAACAAC
GGGCATAATGTAAGTAGACTTTtagcttttattttgaaatgctTTAAGTT
TTAACCGTGTATTAAATAATTATTAtatcttgaaaaataaaattgcaaAT
CTTCATCTGAATATAACTTGACCCTTTATCTCCAAAACAGGATTGAAGCA
CGATtcataattttataaaattcaGATTTGCTTTTGATTCCTAGATACTT
TACTTCTAAAAGTCAACGTATGCAGACGACATGAAGGCTCCATTAGAAGC
ATTAGGAATTTCTGTGGAGCAATACAGGGGCATCTTTGAAGTAAAAAACC
TTGAAAGGTAAGTTGAAATTTtattctcttttatttttttctctttttat
caTGTAAGGcgagacaaaaaaaatttaagttatTGTTCTGCGGGCCTGAC
CGACCCTGTTTattccaaaatccaaaaaattataatattgaattttaaaT
CCTTGAGGATGGACTTTATAAGTTATTTGTAGATATTTCAAACTGATTAA
GTTATGTAACTGATTGCCCTCTCATTCGGGTATCAATCATGAGAGAAATA
AAAGATGTGTTGCCTCACTTTGTACTTTACTGTTAGGCCAAATAAGCAAC
ATGCAAACTTGGTAAAATTTATACCAGTGAATTACACTTGAATTCAATCA
TATTAATAGCATTACCCTTATATTCATAGCGAAGCT

Coding sequence (CDS) from alignment at scaffold_513:195088..196673+

>TCONS_00070070 ID=TCONS_00070070|Name=TCONS_00070070|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_513:195088..196673+ (Clytia hemisphaerica)
GTAATCAGAATGGCCTGTGTCATTGAAATGATGAACAGGTGCATGCTAAC
TGGAGTTGTTGCAACAGAAGCAAACAATATTCTTAACGATATCGTTAACA
CTGTTGCAATGCTGGACGGGGCTGCTGAGCACCAAGGGGAAGTGAGCGag
GAAGCAAGCATCAAAGTGAGCAAAGAAAGTGTCGACCTCGCAATTATTTT
GGTGAACATTTCTTTGAGCCAATCAGCATGTATTCATGGTGAAAAGGAGG
AAGAAATTCCAAATGTTAAAACGAAAAGTCCAGAGGCAAAGAAGAAAATG
GCAAAACAGCTGATTTTGACAACTTCTGGGCAAGTAGTATCAGCCCCACT
TTTGACTAAAAACAACAAAGTCACAAAATTGGCTCCTAAAGGTCATACAC
AGGCACAATATCTTGCAGCAATTTTCCGTCAGCTGGAAAGTGAAGGTTTT
GGTACGGTCAAAGTTAGAGTTGCAAACAACGGGCATAATATACTTTACTT
CTAAGTAATCAGAATGGCCTGTGTCATTGAAATGATGAACAGGTGCATGC
TAACTGGAGTTGTTGCAACAGAAGCAAACAATATTCTTAACGATATCGTT
AACACTGTTGCAATGCTGGACGGGGCTGCTGAGCACCAAGGGGAAGTGAG
CGagGAAGCAAGCATCAAAGTGAGCAAAGAAAGTGTCGACCTCGCAATTA
TTTTGGTGAACATTTCTTTGAGCCAATCAGCATGTATTCATGGTGAAAAG
GAGGAAGAAATTCCAAATGTTAAAACGAAAAGTCCAGAGGCAAAGAAGAA
AATGGCAAAACAGCTGATTTTGACAACTTCTGGGCAAGTAGTATCAGCCC
CACTTTTGACTAAAAACAACAAAGTCACAAAATTGGCTCCTAAAGGTCAT
ACACAGGCACAATATCTTGCAGCAATTTTCCGTCAGCTGGAAAGTGAAGG
TTTTGGTACGGTCAAAGTTAGAGTTGCAAACAACGGGCATAATATACTTT
ACTTCTAAGTAATCAGAATGGCCTGTGTCATTGAAATGATGAACAGGTGC
ATGCTAACTGGAGTTGTTGCAACAGAAGCAAACAATATTCTTAACGATAT
CGTTAACACTGTTGCAATGCTGGACGGGGCTGCTGAGCACCAAGGGGAAG
TGAGCGagGAAGCAAGCATCAAAGTGAGCAAAGAAAGTGTCGACCTCGCA
ATTATTTTGGTGAACATTTCTTTGAGCCAATCAGCATGTATTCATGGTGA
AAAGGAGGAAGAAATTCCAAATGTTAAAACGAAAAGTCCAGAGGCAAAGA
AGAAAATGGCAAAACAGCTGATTTTGACAACTTCTGGGCAAGTAGTATCA
GCCCCACTTTTGACTAAAAACAACAAAGTCACAAAATTGGCTCCTAAAGG
TCATACACAGGCACAATATCTTGCAGCAATTTTCCGTCAGCTGGAAAGTG
AAGGTTTTGGTACGGTCAAAGTTAGAGTTGCAAACAACGGGCATAATATA
CTTTACTTCTAAGTAATCAGAATGGCCTGTGTCATTGAAATGATGAACAG
GTGCATGCTAACTGGAGTTGTTGCAACAGAAGCAAACAATATTCTTAACG
ATATCGTTAACACTGTTGCAATGCTGGACGGGGCTGCTGAGCACCAAGGG
GAAGTGAGCGagGAAGCAAGCATCAAAGTGAGCAAAGAAAGTGTCGACCT
CGCAATTATTTTGGTGAACATTTCTTTGAGCCAATCAGCATGTATTCATG
GTGAAAAGGAGGAAGAAATTCCAAATGTTAAAACGAAAAGTCCAGAGGCA
AAGAAGAAAATGGCAAAACAGCTGATTTTGACAACTTCTGGGCAAGTAGT
ATCAGCCCCACTTTTGACTAAAAACAACAAAGTCACAAAATTGGCTCCTA
AAGGTCATACACAGGCACAATATCTTGCAGCAATTTTCCGTCAGCTGGAA
AGTGAAGGTTTTGGTACGGTCAAAGTTAGAGTTGCAAACAACGGGCATAA
TATACTTTACTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043629XLOC_043629Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070070-exon-scaffold_513-1491911889:195088..195238TCONS_00070070-exon-scaffold_513-1491911889:195088..195238Clytia hemisphaericaexon
TCONS_00070070-exon-scaffold_513-1510915933:195088..195238TCONS_00070070-exon-scaffold_513-1510915933:195088..195238Clytia hemisphaericaexon
TCONS_00070070-exon-scaffold_513-1575043694:195088..195238TCONS_00070070-exon-scaffold_513-1575043694:195088..195238Clytia hemisphaericaexon
TCONS_00070070-exon-scaffold_513-1491911889:195470..195545TCONS_00070070-exon-scaffold_513-1491911889:195470..195545Clytia hemisphaericaexon
TCONS_00070070-exon-scaffold_513-1510915933:195470..195545TCONS_00070070-exon-scaffold_513-1510915933:195470..195545Clytia hemisphaericaexon
TCONS_00070070-exon-scaffold_513-1575043694:195470..195545TCONS_00070070-exon-scaffold_513-1575043694:195470..195545Clytia hemisphaericaexon
TCONS_00070070-exon-scaffold_513-1491911889:195734..195996TCONS_00070070-exon-scaffold_513-1491911889:195734..195996Clytia hemisphaericaexon
TCONS_00070070-exon-scaffold_513-1510915933:195734..195996TCONS_00070070-exon-scaffold_513-1510915933:195734..195996Clytia hemisphaericaexon
TCONS_00070070-exon-scaffold_513-1575043694:195734..195996TCONS_00070070-exon-scaffold_513-1575043694:195734..195996Clytia hemisphaericaexon
TCONS_00070070-exon-scaffold_513-1491911889:196182..196294TCONS_00070070-exon-scaffold_513-1491911889:196182..196294Clytia hemisphaericaexon
TCONS_00070070-exon-scaffold_513-1510915933:196182..196294TCONS_00070070-exon-scaffold_513-1510915933:196182..196294Clytia hemisphaericaexon
TCONS_00070070-exon-scaffold_513-1575043694:196182..196294TCONS_00070070-exon-scaffold_513-1575043694:196182..196294Clytia hemisphaericaexon
TCONS_00070070-exon-scaffold_513-1491911889:196667..196673TCONS_00070070-exon-scaffold_513-1491911889:196667..196673Clytia hemisphaericaexon
TCONS_00070070-exon-scaffold_513-1510915933:196667..196673TCONS_00070070-exon-scaffold_513-1510915933:196667..196673Clytia hemisphaericaexon
TCONS_00070070-exon-scaffold_513-1575043694:196667..196673TCONS_00070070-exon-scaffold_513-1575043694:196667..196673Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070070-proteinTCONS_00070070-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:195088..196673 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.366867	0.854917	0	0.494553	0.645542	0.887531	0.934894	1.33942	0.543518	1.80865	1.92653	3.8151	3.2048	2.75668	3.27374	1.54004	3.34518	3.62396	3.04675	2.03716	2.73846	0	0.206012	2.39481	2.47621	0.370943	0.471837	0.330026	0.130542
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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