TCONS_00070069 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070069
Unique NameTCONS_00070069
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length596

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070069 ID=TCONS_00070069|Name=TCONS_00070069|organism=Clytia hemisphaerica|type=transcript|length=596bp
GTTTGGTCTGCGATTTCTTCATTGGACAAGCCTGAAAGTCAGTAAAGTGG
GGAAAAAGGTATTACATACCGGTGGTGGCGGACTATGCGTTATAGTGCTT
GTCAAATGTTTTGGNAAAATTCTTTTGATTATTCTTTAAAGGTATTACAT
ACCAGTGGTGGCGGACTATGCGTTATGGTGCTTGTCAAATGTTTTGGATT
TGATTTCTTTACTGGACAAGCCTGAATAAACAGAAGAAAAGGATATTCAA
TCTAAACTACCTTTATCTGAGGATTAGAATAGGCGATTGGTACCATATca
atttcctgaaaaataaaCGAGAAGTCAGCATCATATCAAACTTGTTGATA
GAGACATTCGATCGGACACTAGAAGGACAGTGTGAGTATCtagattaatt
tttgaaaaaaaatctaatgaaatgaTAAGATGGCTCAATTTCAATTATGT
TTTAACAAATTGTCAACATTAGAATAAATGGCAGGACATGAAAAAGTTAA
ATTATGTCGTGAAAAATTGATCTTTTGAGCTACTAAGTTTGGTAACAGAT
TCCTGCCTTACCTTCATTTCCTTCGATTTTCTTCATGGGGGAGAAC
Run BLAST on NCBI

transcript from alignment at scaffold_513:123079..124282+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070069 ID=TCONS_00070069|Name=TCONS_00070069|organism=Clytia hemisphaerica|type=transcript|length=1204bp|location=Sequence derived from alignment at scaffold_513:123079..124282+ (Clytia hemisphaerica)
GTTTGGTCTGCGATTTCTTCATTGGACAAGCCTGAAAGTCAGTAAAGTGG
GGAAAAAGGTAAGATGAAAATTTCCTATCATTTTAtgtggaaaagatttt
ttcatataCTTTAGATACAACAAGTCTCTACCTTTTTATAGGTTTAATAA
TTGTTAAATTCATTCATCTGAAAGCTAACTtagaaaattcttttgattat
TCTTTAAAGGTATTACATACCGGTGGTGGCGGACTATGCGTTATAGTGCT
TGTCAAATGTTTTGGNAAAATTCTTTTGATTATTCTTTAAAGGTATTACA
TACCAGTGGTGGCGGACTATGCGTTATGGTGCTTGTCAAATGTTTTGGAT
TTGATTTCTTTACTGGACAAGCCTGAATAAACAGAAGAAAAGGTAAGATT
ACTCATGGTTTATATGTTAAATCTAAACCagaagttttcttttcatttat
aGCACATATTTTTGTTGTAGATGTGGTACATAATTTAAGACCATGCAAAT
AATTTTTCCAGCCAAGTAGTTCACCAAGTTATTACAGAACATGAGCTgaa
attgcttaaaaatttATTAATTGGTGTGTGGGGGACTCGGGCCCTTTAAG
AATGTTGGAAAGCTGGACTAGAGCCTCTTTAAAATTAAGTTAATATAATG
TTAAGTACCTTTGGTCTGTTTTTCATGAAAGGTTTATCCTGTGATTTCTG
GAAAAATAATGATTctttaataaattttcaaatttatttagaCACTAGCT
TGAATTGGTGGGGTCTGCATTTGAAGTGTAAATTTAGTTGTGGTAATTAC
AGTTAAAGATTAAACCCTCACTTAATTAAACTTATTTTTTATTGTACAGG
ATATTCAATCTAAACTACCTTTATCTGAGGATTAGAATAGGCGATTGGTA
CCATATcaatttcctgaaaaataaaCGAGAAGTCAGCATCATATCAAACT
TGTTGATAGAGACATTCGATCGGACACTAGAAGGACAGTGTGAGTATCta
gattaatttttgaaaaaaaatctaatgaaatgaTAAGATGGCTCAATTTC
AATTATGTTTTAACAAATTGTCAACATTAGAATAAATGGCAGGACATGAA
AAAGTTAAATTATGTCGTGAAAAATTGATCTTTTGAGCTACTAAGTTTGG
TAACAGATTCCTGCCTTACCTTCATTTCCTTCGATTTTCTTCATGGGGGA
GAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043628XLOC_043628Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070069-exon-scaffold_513-1491911889:123079..123136TCONS_00070069-exon-scaffold_513-1491911889:123079..123136Clytia hemisphaericaexon
TCONS_00070069-exon-scaffold_513-1510915933:123079..123136TCONS_00070069-exon-scaffold_513-1510915933:123079..123136Clytia hemisphaericaexon
TCONS_00070069-exon-scaffold_513-1575043694:123079..123136TCONS_00070069-exon-scaffold_513-1575043694:123079..123136Clytia hemisphaericaexon
TCONS_00070069-exon-scaffold_513-1491911889:123288..123470TCONS_00070069-exon-scaffold_513-1491911889:123288..123470Clytia hemisphaericaexon
TCONS_00070069-exon-scaffold_513-1510915933:123288..123470TCONS_00070069-exon-scaffold_513-1510915933:123288..123470Clytia hemisphaericaexon
TCONS_00070069-exon-scaffold_513-1575043694:123288..123470TCONS_00070069-exon-scaffold_513-1575043694:123288..123470Clytia hemisphaericaexon
TCONS_00070069-exon-scaffold_513-1491911889:123928..124282TCONS_00070069-exon-scaffold_513-1491911889:123928..124282Clytia hemisphaericaexon
TCONS_00070069-exon-scaffold_513-1510915933:123928..124282TCONS_00070069-exon-scaffold_513-1510915933:123928..124282Clytia hemisphaericaexon
TCONS_00070069-exon-scaffold_513-1575043694:123928..124282TCONS_00070069-exon-scaffold_513-1575043694:123928..124282Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:123079..124282 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.200621	0.268174	0.268853	0.203086	6.40751	4.49358	2.42797	3.97211	0	0	0	0.248817	0	0	0	0.207813	0	0	0.779552	0	0	0	0	0	0.590531	1.48755	0	0	0.352453	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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