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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070057 ID=TCONS_00070057|Name=TCONS_00070057|organism=Clytia hemisphaerica|type=transcript|length=2865bp
AGAACATTCATGAAGAACATTCCAGACGATAGGACTGGACCATCAAAGAA
CTTTATGTACATACTAGAATGTTCCATACTGAACATAGAACATTCTATTT
CATTCTATTTAGGTTACCATTTTGTTGTCTAGAACATTCTAGCTATCTTC
TAGTTTCTAGACTATTTTTCTAGACCATTCTTTGTAAATAGTATATAAGA
CTGACTTGTAACTGATTTCATTAGAGTTTGAGTTTACTTGAAAGACTGAT
CATAACCAACAACTACAATAGTCAACAGGTTATGGGCCCAGACACAGAAG
AGTAAAAAGAAGAATCACAACATCACAACATTCGCCATCTTGATATATTT
TGTTATTGCAATTTTGCGGACGTTTCTGGAAACAGTTTGCTGATCAAAAC
ATTGGGTGTCCGGCGAATCAAGTATCCGGATAAAGATAATGGCTACGGAA
GCAACAAAGATATTAATCAAGCCGCTGAATGGCGCTAACTACGCCACTTG
GAAAGTACAATGTAGAATGGCGTTGATTCGTGAGGGGTTGTGGAATATCG
TCAACGAGACGGAAGGAGTTCCAGAACAAAATGTGGACAAGTATCGATTG
CGGAAGGATCGCGCACTGGCGACGATCGTGCTATCAATGGAACCTTCGTT
ATTGTACCTACTGGGGCCGGATCCAGATGACCCGGCAGAGGTATGGAAGA
AACTCTCAGATCAATTTCAAAAGAAGTCGTGGGCAAACAAATTGGCTCTA
CGAAGAAAGCTCTACACTTTACAGCTGAAGGACGGACAATCAATTCAAAA
GCATATTAAAACTATAACTGAACTGTTTGATGAGTTGGCTATCGTTGGGG
ATCCGCTGGATGATGAAAACAAAGTTGTCCATTTACTTGCAAGCCTTCCC
AAATCTTACGACATGTTGGTCACCGCACTGGAGGCGAATCCTGAAGTTCC
GAAGATTGAAGTCGTCACCGAGCGTTTAATCCACGAGGAGACGAAACAGA
AAGAAGGAATTCAGCAAGACGAGAAAGCGATGTCATCGAGACACAGTAAC
AGACGAGGATCGGGAAAAGGACCACAATGTCATTTTTGTGGAAAACATGG
ACACTTTAAACGGGACTGCTACAGTTACAAAAAGTCCTTAAAAAGTGACG
AACCCAAGAACGATGATTTTAAACCAAAGAAGAAACCGATTATCAAACAG
CGAGCTTGTCCAGCAGAGGAGCAATCGGACGATGAGGAAATTGTTGGATT
GTATGTAGAGCAAACGAAATCAGAAATAGCTACTGATTGGATCATAGACT
CAGGAGCTTCGTGTCACATGAGCTATGATGAGAGGCTATTCAATGAAATC
AAAGAGCTTGATGAGCCTCAGGAAATAACTGTAGGAGATGGATTCAAGGT
TAAAGCAACTGGTGTTGGGACACTTGATCTATACATGAAGTTACCAAATG
GAAAGACAAATCACTGTAGATTGTCAGACGTCCTGTACGTACCGAAGTTA
TCATATAATCTTTTCAGCGTCTCGAGAACAACGAAAAGAGGGAAGAGAAT
CGAGTTCGAAGATTCGATTTGTAAGGTGCTTGACAAGGACCGGAAGTTAA
TCGCTATTGGAATGAAGCGAGGAAATATTTATCATTTGAACTGTGTTCAA
CAGTCTAAAGGGACTAATGAAGCCGTACTTTGTAAAGCAGAGGACACAAA
GGAAGCCGTATGGCATCGACGCTATGGTCACCTTGGAGTAAAAAATTTGG
ACCGGTTAGCGAAGGATCACCTGGTCGAGGGATTCGATTACGATGTCAAG
AAGGAGGAAAAGTTTTGTGAACCATGCGTTAGTGGGAAGCAGCACCGCAC
ACCATTTCCGAAAACAGGAGGAGCACGGGCGGAAGTTTTGCTTGGAGAAA
TACATTCTGACGTATGCGGAAAGATCGAGGAGAAGTCACTGAGCGGTGCA
GAATACTTTGTGACCTTCATTGACGATAAAACACGAAACACATGGATGTA
CACAATGAAACATAAAAGTGAAACTTTTCAAAAGTTTAAAGAATGGAAAG
CGATGGTCGAAAAGACAACTGGTTTGAAGATTAAGAGACTTCGAACAGAC
AATGGAGGTGAGTACACCTCAAACGAATTTGAGGAATACCTTAAAGCTGA
GGGAATTCAACACAAAACCACGATTGCTAAAACACCGGAGCAGAATGGTG
TAGCGGAAAGGATGAATCGGACACTAGTAGAAACTGTGAGAGCTATGTTG
GCTGACTCGAAATTGCCAAAACGTTTTTGGGCTGAAGCTTTATCGACAGC
AGTGTACCTACGAAACCGAAGTCCAACGAGAGCAGTCCAAGACATGACTC
CGTATGAAGCTTGGACAGGAGCTAAACCGAATGTGAGCAACCTCCGAATC
TTTGGTTGCAACGCTTATGCACACGTACCAAAAGATGAACGTGCAAAGAT
TGATCCAAAAACGAAACGCTGTATCTTTCTGGGTTATGGTGAGACGACGA
AAGGTTATCGGTTATACGATGAGAAGAAACAAAGAGTATTCTTTAGCAGA
GATGTCGTTTTCAACGAGACAGAGGAACCAAACCAAAATAAGTCATCACC
GGAGAAAGAGGAAGCAGCAACCGAACCAGCCGTGGATATTAATCCGCACA
ACGAAATCCTAGACGGCGAAAATGATGATCCAAGACCACGAGATCCACCA
AGACCTAGAAGAGAGATCAATCCTCCAAATCGTTATGGAGATTGGGTAGT
CCACATCGCGAAACAGGATGACGATCCAAAGTCGATAAGAGAAGCTCTTT
CTAGtgaggaaaaagaaaaatggacaGTGGCTATGGAGAAAGAGTTTAAT
TCACTCGACGAAAAT Run BLAST on NCBI protein sequence of TCONS_00070057-protein >TCONS_00070057-protein ID=TCONS_00070057-protein|Name=TCONS_00070057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=809bp
MATEATKILIKPLNGANYATWKVQCRMALIREGLWNIVNETEGVPEQNVD
KYRLRKDRALATIVLSMEPSLLYLLGPDPDDPAEVWKKLSDQFQKKSWAN
KLALRRKLYTLQLKDGQSIQKHIKTITELFDELAIVGDPLDDENKVVHLL
ASLPKSYDMLVTALEANPEVPKIEVVTERLIHEETKQKEGIQQDEKAMSS
RHSNRRGSGKGPQCHFCGKHGHFKRDCYSYKKSLKSDEPKNDDFKPKKKP
IIKQRACPAEEQSDDEEIVGLYVEQTKSEIATDWIIDSGASCHMSYDERL
FNEIKELDEPQEITVGDGFKVKATGVGTLDLYMKLPNGKTNHCRLSDVLY
VPKLSYNLFSVSRTTKRGKRIEFEDSICKVLDKDRKLIAIGMKRGNIYHL
NCVQQSKGTNEAVLCKAEDTKEAVWHRRYGHLGVKNLDRLAKDHLVEGFD
YDVKKEEKFCEPCVSGKQHRTPFPKTGGARAEVLLGEIHSDVCGKIEEKS
LSGAEYFVTFIDDKTRNTWMYTMKHKSETFQKFKEWKAMVEKTTGLKIKR
LRTDNGGEYTSNEFEEYLKAEGIQHKTTIAKTPEQNGVAERMNRTLVETV
RAMLADSKLPKRFWAEALSTAVYLRNRSPTRAVQDMTPYEAWTGAKPNVS
NLRIFGCNAYAHVPKDERAKIDPKTKRCIFLGYGETTKGYRLYDEKKQRV
FFSRDVVFNETEEPNQNKSSPEKEEAATEPAVDINPHNEILDGENDDPRP
RDPPRPRREINPPNRYGDWVVHIAKQDDDPKSIREALSSEEKEKWTVAME
KEFNSLDEN Run BLAST on NCBI transcript from alignment at scaffold_512:110676..113540 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070057 ID=TCONS_00070057|Name=TCONS_00070057|organism=Clytia hemisphaerica|type=transcript|length=2865bp|location=Sequence derived from alignment at scaffold_512:110676..113540 (Clytia hemisphaerica)
ATTTTCGTCGAGTGAATTAAACTCTTTCTCCATAGCCACtgtccattttt
ctttttcctcaCTAGAAAGAGCTTCTCTTATCGACTTTGGATCGTCATCC
TGTTTCGCGATGTGGACTACCCAATCTCCATAACGATTTGGAGGATTGAT
CTCTCTTCTAGGTCTTGGTGGATCTCGTGGTCTTGGATCATCATTTTCGC
CGTCTAGGATTTCGTTGTGCGGATTAATATCCACGGCTGGTTCGGTTGCT
GCTTCCTCTTTCTCCGGTGATGACTTATTTTGGTTTGGTTCCTCTGTCTC
GTTGAAAACGACATCTCTGCTAAAGAATACTCTTTGTTTCTTCTCATCGT
ATAACCGATAACCTTTCGTCGTCTCACCATAACCCAGAAAGATACAGCGT
TTCGTTTTTGGATCAATCTTTGCACGTTCATCTTTTGGTACGTGTGCATA
AGCGTTGCAACCAAAGATTCGGAGGTTGCTCACATTCGGTTTAGCTCCTG
TCCAAGCTTCATACGGAGTCATGTCTTGGACTGCTCTCGTTGGACTTCGG
TTTCGTAGGTACACTGCTGTCGATAAAGCTTCAGCCCAAAAACGTTTTGG
CAATTTCGAGTCAGCCAACATAGCTCTCACAGTTTCTACTAGTGTCCGAT
TCATCCTTTCCGCTACACCATTCTGCTCCGGTGTTTTAGCAATCGTGGTT
TTGTGTTGAATTCCCTCAGCTTTAAGGTATTCCTCAAATTCGTTTGAGGT
GTACTCACCTCCATTGTCTGTTCGAAGTCTCTTAATCTTCAAACCAGTTG
TCTTTTCGACCATCGCTTTCCATTCTTTAAACTTTTGAAAAGTTTCACTT
TTATGTTTCATTGTGTACATCCATGTGTTTCGTGTTTTATCGTCAATGAA
GGTCACAAAGTATTCTGCACCGCTCAGTGACTTCTCCTCGATCTTTCCGC
ATACGTCAGAATGTATTTCTCCAAGCAAAACTTCCGCCCGTGCTCCTCCT
GTTTTCGGAAATGGTGTGCGGTGCTGCTTCCCACTAACGCATGGTTCACA
AAACTTTTCCTCCTTCTTGACATCGTAATCGAATCCCTCGACCAGGTGAT
CCTTCGCTAACCGGTCCAAATTTTTTACTCCAAGGTGACCATAGCGTCGA
TGCCATACGGCTTCCTTTGTGTCCTCTGCTTTACAAAGTACGGCTTCATT
AGTCCCTTTAGACTGTTGAACACAGTTCAAATGATAAATATTTCCTCGCT
TCATTCCAATAGCGATTAACTTCCGGTCCTTGTCAAGCACCTTACAAATC
GAATCTTCGAACTCGATTCTCTTCCCTCTTTTCGTTGTTCTCGAGACGCT
GAAAAGATTATATGATAACTTCGGTACGTACAGGACGTCTGACAATCTAC
AGTGATTTGTCTTTCCATTTGGTAACTTCATGTATAGATCAAGTGTCCCA
ACACCAGTTGCTTTAACCTTGAATCCATCTCCTACAGTTATTTCCTGAGG
CTCATCAAGCTCTTTGATTTCATTGAATAGCCTCTCATCATAGCTCATGT
GACACGAAGCTCCTGAGTCTATGATCCAATCAGTAGCTATTTCTGATTTC
GTTTGCTCTACATACAATCCAACAATTTCCTCATCGTCCGATTGCTCCTC
TGCTGGACAAGCTCGCTGTTTGATAATCGGTTTCTTCTTTGGTTTAAAAT
CATCGTTCTTGGGTTCGTCACTTTTTAAGGACTTTTTGTAACTGTAGCAG
TCCCGTTTAAAGTGTCCATGTTTTCCACAAAAATGACATTGTGGTCCTTT
TCCCGATCCTCGTCTGTTACTGTGTCTCGATGACATCGCTTTCTCGTCTT
GCTGAATTCCTTCTTTCTGTTTCGTCTCCTCGTGGATTAAACGCTCGGTG
ACGACTTCAATCTTCGGAACTTCAGGATTCGCCTCCAGTGCGGTGACCAA
CATGTCGTAAGATTTGGGAAGGCTTGCAAGTAAATGGACAACTTTGTTTT
CATCATCCAGCGGATCCCCAACGATAGCCAACTCATCAAACAGTTCAGTT
ATAGTTTTAATATGCTTTTGAATTGATTGTCCGTCCTTCAGCTGTAAAGT
GTAGAGCTTTCTTCGTAGAGCCAATTTGTTTGCCCACGACTTCTTTTGAA
ATTGATCTGAGAGTTTCTTCCATACCTCTGCCGGGTCATCTGGATCCGGC
CCCAGTAGGTACAATAACGAAGGTTCCATTGATAGCACGATCGTCGCCAG
TGCGCGATCCTTCCGCAATCGATACTTGTCCACATTTTGTTCTGGAACTC
CTTCCGTCTCGTTGACGATATTCCACAACCCCTCACGAATCAACGCCATT
CTACATTGTACTTTCCAAGTGGCGTAGTTAGCGCCATTCAGCGGCTTGAT
TAATATCTTTGTTGCTTCCGTAGCCATTATCTTTATCCGGATACTTGATT
CGCCGGACACCCAATGTTTTGATCAGCAAACTGTTTCCAGAAACGTCCGC
AAAATTGCAATAACAAAATATATCAAGATGGCGAATGTTGTGATGTTGTG
ATTCTTCTTTTTACTCTTCTGTGTCTGGGCCCATAACCTGTTGACTATTG
TAGTTGTTGGTTATGATCAGTCTTTCAAGTAAACTCAAACTCTAATGAAA
TCAGTTACAAGTCAGTCTTATATACTATTTACAAAGAATGGTCTAGAAAA
ATAGTCTAGAAACTAGAAGATAGCTAGAATGTTCTAGACAACAAAATGGT
AACCTAAATAGAATGAAATAGAATGTTCTATGTTCAGTATGGAACATTCT
AGTATGTACATAAAGTTCTTTGATGGTCCAGTCCTATCGTCTGGAATGTT
CTTCATGAATGTTCT Coding sequence (CDS) from alignment at scaffold_512:110676..113540 >TCONS_00070057 ID=TCONS_00070057|Name=TCONS_00070057|organism=Clytia hemisphaerica|type=CDS|length=2427bp|location=Sequence derived from alignment at scaffold_512:110676..113540 (Clytia hemisphaerica)
ATTTTCGTCGAGTGAATTAAACTCTTTCTCCATAGCCACtgtccattttt
ctttttcctcaCTAGAAAGAGCTTCTCTTATCGACTTTGGATCGTCATCC
TGTTTCGCGATGTGGACTACCCAATCTCCATAACGATTTGGAGGATTGAT
CTCTCTTCTAGGTCTTGGTGGATCTCGTGGTCTTGGATCATCATTTTCGC
CGTCTAGGATTTCGTTGTGCGGATTAATATCCACGGCTGGTTCGGTTGCT
GCTTCCTCTTTCTCCGGTGATGACTTATTTTGGTTTGGTTCCTCTGTCTC
GTTGAAAACGACATCTCTGCTAAAGAATACTCTTTGTTTCTTCTCATCGT
ATAACCGATAACCTTTCGTCGTCTCACCATAACCCAGAAAGATACAGCGT
TTCGTTTTTGGATCAATCTTTGCACGTTCATCTTTTGGTACGTGTGCATA
AGCGTTGCAACCAAAGATTCGGAGGTTGCTCACATTCGGTTTAGCTCCTG
TCCAAGCTTCATACGGAGTCATGTCTTGGACTGCTCTCGTTGGACTTCGG
TTTCGTAGGTACACTGCTGTCGATAAAGCTTCAGCCCAAAAACGTTTTGG
CAATTTCGAGTCAGCCAACATAGCTCTCACAGTTTCTACTAGTGTCCGAT
TCATCCTTTCCGCTACACCATTCTGCTCCGGTGTTTTAGCAATCGTGGTT
TTGTGTTGAATTCCCTCAGCTTTAAGGTATTCCTCAAATTCGTTTGAGGT
GTACTCACCTCCATTGTCTGTTCGAAGTCTCTTAATCTTCAAACCAGTTG
TCTTTTCGACCATCGCTTTCCATTCTTTAAACTTTTGAAAAGTTTCACTT
TTATGTTTCATTGTGTACATCCATGTGTTTCGTGTTTTATCGTCAATGAA
GGTCACAAAGTATTCTGCACCGCTCAGTGACTTCTCCTCGATCTTTCCGC
ATACGTCAGAATGTATTTCTCCAAGCAAAACTTCCGCCCGTGCTCCTCCT
GTTTTCGGAAATGGTGTGCGGTGCTGCTTCCCACTAACGCATGGTTCACA
AAACTTTTCCTCCTTCTTGACATCGTAATCGAATCCCTCGACCAGGTGAT
CCTTCGCTAACCGGTCCAAATTTTTTACTCCAAGGTGACCATAGCGTCGA
TGCCATACGGCTTCCTTTGTGTCCTCTGCTTTACAAAGTACGGCTTCATT
AGTCCCTTTAGACTGTTGAACACAGTTCAAATGATAAATATTTCCTCGCT
TCATTCCAATAGCGATTAACTTCCGGTCCTTGTCAAGCACCTTACAAATC
GAATCTTCGAACTCGATTCTCTTCCCTCTTTTCGTTGTTCTCGAGACGCT
GAAAAGATTATATGATAACTTCGGTACGTACAGGACGTCTGACAATCTAC
AGTGATTTGTCTTTCCATTTGGTAACTTCATGTATAGATCAAGTGTCCCA
ACACCAGTTGCTTTAACCTTGAATCCATCTCCTACAGTTATTTCCTGAGG
CTCATCAAGCTCTTTGATTTCATTGAATAGCCTCTCATCATAGCTCATGT
GACACGAAGCTCCTGAGTCTATGATCCAATCAGTAGCTATTTCTGATTTC
GTTTGCTCTACATACAATCCAACAATTTCCTCATCGTCCGATTGCTCCTC
TGCTGGACAAGCTCGCTGTTTGATAATCGGTTTCTTCTTTGGTTTAAAAT
CATCGTTCTTGGGTTCGTCACTTTTTAAGGACTTTTTGTAACTGTAGCAG
TCCCGTTTAAAGTGTCCATGTTTTCCACAAAAATGACATTGTGGTCCTTT
TCCCGATCCTCGTCTGTTACTGTGTCTCGATGACATCGCTTTCTCGTCTT
GCTGAATTCCTTCTTTCTGTTTCGTCTCCTCGTGGATTAAACGCTCGGTG
ACGACTTCAATCTTCGGAACTTCAGGATTCGCCTCCAGTGCGGTGACCAA
CATGTCGTAAGATTTGGGAAGGCTTGCAAGTAAATGGACAACTTTGTTTT
CATCATCCAGCGGATCCCCAACGATAGCCAACTCATCAAACAGTTCAGTT
ATAGTTTTAATATGCTTTTGAATTGATTGTCCGTCCTTCAGCTGTAAAGT
GTAGAGCTTTCTTCGTAGAGCCAATTTGTTTGCCCACGACTTCTTTTGAA
ATTGATCTGAGAGTTTCTTCCATACCTCTGCCGGGTCATCTGGATCCGGC
CCCAGTAGGTACAATAACGAAGGTTCCATTGATAGCACGATCGTCGCCAG
TGCGCGATCCTTCCGCAATCGATACTTGTCCACATTTTGTTCTGGAACTC
CTTCCGTCTCGTTGACGATATTCCACAACCCCTCACGAATCAACGCCATT
CTACATTGTACTTTCCAAGTGGCGTAGTTAGCGCCATTCAGCGGCTTGAT
TAATATCTTTGTTGCTTCCGTAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070057-exon-scaffold_512-1491911889:110676..113540 | TCONS_00070057-exon-scaffold_512-1491911889:110676..113540 | Clytia hemisphaerica | exon |
| TCONS_00070057-exon-scaffold_512-1510915933:110676..113540 | TCONS_00070057-exon-scaffold_512-1510915933:110676..113540 | Clytia hemisphaerica | exon |
| TCONS_00070057-exon-scaffold_512-1575043694:110676..113540 | TCONS_00070057-exon-scaffold_512-1575043694:110676..113540 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_512 | supercontig | scaffold_512:110676..113540 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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