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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070040 ID=TCONS_00070040|Name=TCONS_00070040|organism=Clytia hemisphaerica|type=transcript|length=1427bp
TGATATACAGGTTACTCACTCCAATTCAATTTTTAACTTAAGGGACAAGA
atcttcttcgaattagagaaagattctaATTTACTGGATGCATTTTATAC
TATTTTCAAGTTAAGGTTGGCCCCGTTTTATTTCGAAtcacagaaagatt
cgaatagtagaagttcgaattagagagaggttTGTCTGTAATGGTAatca
tattttgataaattgatAATCATTGTTTCTCATGCGTTATAGGATCCTTT
GGGTTGTGTCGACTTACGCTACTGCACTGATAAATCCGTCGCTCTTCTGT
CACGTGATAAATGCGCTCGTCCAAATACTTTCGAGTTGAACTTGAAACGC
GCTTTGAAACCTGGAGACGAATCTAATTTGGTCAAAACAGTGGACGGAAA
ATATGCTTTTATCAAagTTTGGATTTGTACTGATAACAAAGATGATCGCA
TCACATGGATGGAGTCGTTGAATAAACAGATCAGTGACTCCATGGCATGG
AATATGCGAAAAACTGTCAACCAAAAACAATCTGGTTCttcaaaagtcaa
agaaaacGTTCCTATCCTCGTATGAAAAGATGATGGTGTAGTCGGATTAA
AATTTTGTGGCCACGAGGTTTTGTAGAGAAGCGAACGTGTATAGATGGTG
CACGCATGCGCTCTCTATTACATTACATATACGCATGCGCTTTCTCTATC
TTCCCACTGACGTGGTGGGCAGGAGCAAGTAGAACAAAGATAATATCACC
TGGTTGACAGTTATCCTCATTTACCAGCAGTGTATGGAATTGGTGATTAT
GTCGATATGGAATTCAAGGATAAGAAAGCTATGACATACATTAAATTTGC
GAATTGATAAATTCTACCGTAGTTAAACAATATTATTATCTTCTGACCTT
AAAGATTTTGTTGTAGACAATTTGAAGGAAGCATCTTACAATCTGGACGA
CCTAAGATTTTTTCTAAACACTCGGTGATTTTTGTGCCGCCTTTTAGAAC
CAGTCACAACAGCCAACTAGGCAAACTCGAACGGGTTCCTCAAAAAATGT
AGATCACCCATGTATGTATCTTTTCATCGTAATTAGAGTATTATTTTAGa
tgtatttttaaaagaactattGTATTCTCATTCTATTCTCAAGtctattt
tttaaagtaaactTGTAAGTAACTACTAACTTAAACTTTGTATATAATCT
AATTTTCATGTAATGTCCCTGACAAGTAGATTGGGAATGACAAAGGAGTC
AAAACCAAAGTTATATTGCTACGTCTTATGCTGTATTATGATAAACACAT
ACTTATTGAAACATAACATCATAAAATCAATCTTttatgaattaattttt
ttgtatatattctttattcagtaaaaataaaatattcattttttggTTAC
TCATTTGTTAccgtcatttattttttc Run BLAST on NCBI transcript from alignment at scaffold_512:222403..224249- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070040 ID=TCONS_00070040|Name=TCONS_00070040|organism=Clytia hemisphaerica|type=transcript|length=1847bp|location=Sequence derived from alignment at scaffold_512:222403..224249- (Clytia hemisphaerica)
TGATATACAGGTTACTCACTCCAATTCAATTTTTAACTTAAGGGACAAGA
ATCTTCTTCGAATTAGAGAAAGATTCTAATTTACTGGATGCATTTTATAC
TATTTTCAAGTTAAGGTTGGCCCCGTTTTATTTCGAATCACAGAAAGATT
CGAATAGTAGAAGTTCGAATTAGAGAGAGGTTTGTCTGTAATGGTAATCA
TATTTTGATAAATTGATAATCATTGTTTCTCATGCGTTATAGGATCCTTT
GGGTTGTGTCGACTTACGCTACTGCACTGATAAATCCGTCGCTCTTCTGT
CACGTGATAAATGCGCTCGTCCAAATACTTTCGAGTTGAACTTGAAACGC
GCTTTGAAACCTGGAGACGAATCTAATTTGGTCAAAACAGTGGACGGAAA
ATATGCTTTTATCAAGTAAGTTTGTATTTTAACATATAACCGAAAAAGAC
TTCGTACTTTTTCTACTGNGCTTTTATCAAGTAAGTTCGTATTTTAACAT
ACAACCGAAAAAGACTTTCTACTGTAAGATGTTTTTAAAACTACTGTATT
ACTTCGAAAAAACGCCCCCTTCTTTTAAACTTCACCCTCGGATAAACGCT
AAATCTCGAATTAATCCCTCAAATTAAACTGTTGGTATCGAGTATTTCAA
CCTAAGGGGGTTATCAAGTTTTGAGATTTTTCCGCCCACCCCGCCTATTA
GGTACTCGAGAGTTACTAACTGGGTACGCTTCCATTGTGTGAGAAGCCTA
ATCCAGTCAAGCAGTTAGAGGTTAATAATGTGAAAGAAACTTTATTACAA
TAAATTTTTAACATCTTTCTAATTTTATTTTATAGAGTTTGGATTTGTAC
TGATAACAAAGATGATCGCATCACATGGATGGAGTCGTTGAATAAACAGA
TCAGTGACTCCATGGCATGGAATATGCGAAAAACTGTCAACCAAAAACAA
TCTGGTTCTTCAAAAGTCAAAGAAAACGTTCCTATCCTCGTATGAAAAGA
TGATGGTGTAGTCGGATTAAAATTTTGTGGCCACGAGGTTTTGTAGAGAA
GCGAACGTGTATAGATGGTGCACGCATGCGCTCTCTATTACATTACATAT
ACGCATGCGCTTTCTCTATCTTCCCACTGACGTGGTGGGCAGGAGCAAGT
AGAACAAAGATAATATCACCTGGTTGACAGTTATCCTCATTTACCAGCAG
TGTATGGAATTGGTGATTATGTCGATATGGAATTCAAGGATAAGAAAGCT
ATGACATACATTAAATTTGCGAATTGATAAATTCTACCGTAGTTAAACAA
TATTATTATCTTCTGACCTTAAAGATTTTGTTGTAGACAATTTGAAGGAA
GCATCTTACAATCTGGACGACCTAAGATTTTTTCTAAACACTCGGTGATT
TTTGTGCCGCCTTTTAGAACCAGTCACAACAGCCAACTAGGCAAACTCGA
ACGGGTTCCTCAAAAAATGTAGATCACCCATGTATGTATCTTTTCATCGT
AATTAGAGTATTATTTTAGATGTATTTTTAAAAGAACTATTGTATTCTCA
TTCTATTCTCAAGTCTATTTTTTAAAGTAAACTTGTAAGTAACTACTAAC
TTAAACTTTGTATATAATCTAATTTTCATGTAATGTCCCTGACAAGTAGA
TTGGGAATGACAAAGGAGTCAAAACCAAAGTTATATTGCTACGTCTTATG
CTGTATTATGATAAACACATACTTATTGAAACATAACATCATAAAATCAA
TCTTTTATGAATTAATTTTTTTGTATATATTCTTTATTCAGTAAAAATAA
AATATTCATTTTTTGGTTACTCATTTGTTACCGTCATTTATTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070040-exon-scaffold_512-1575043694:223835..224249 | TCONS_00070040-exon-scaffold_512-1575043694:223835..224249 | Clytia hemisphaerica | exon |
| TCONS_00070040-exon-scaffold_512-1575043694:222403..223414 | TCONS_00070040-exon-scaffold_512-1575043694:222403..223414 | Clytia hemisphaerica | exon |
| TCONS_00070040-exon-scaffold_512-1510915933:223835..224249 | TCONS_00070040-exon-scaffold_512-1510915933:223835..224249 | Clytia hemisphaerica | exon |
| TCONS_00070040-exon-scaffold_512-1510915933:222403..223414 | TCONS_00070040-exon-scaffold_512-1510915933:222403..223414 | Clytia hemisphaerica | exon |
| TCONS_00070040-exon-scaffold_512-1491911889:223835..224249 | TCONS_00070040-exon-scaffold_512-1491911889:223835..224249 | Clytia hemisphaerica | exon |
| TCONS_00070040-exon-scaffold_512-1491911889:222403..223414 | TCONS_00070040-exon-scaffold_512-1491911889:222403..223414 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_512 | supercontig | scaffold_512:222403..224249 - |
Blast
The following BLAST results are available for this feature:
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