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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070025 ID=TCONS_00070025|Name=TCONS_00070025|organism=Clytia hemisphaerica|type=transcript|length=1212bpRun BLAST on NCBI protein sequence of TCONS_00070025-protein >TCONS_00070025-protein ID=TCONS_00070025-protein|Name=TCONS_00070025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp ISFLFASLFAKICLIGYTPSDSPEPFTGFRRVGQYLLWGVARFLLFVYGFRun BLAST on NCBI transcript from alignment at scaffold_512:261967..277259+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070025 ID=TCONS_00070025|Name=TCONS_00070025|organism=Clytia hemisphaerica|type=transcript|length=15293bp|location=Sequence derived from alignment at scaffold_512:261967..277259+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_512:261967..277259+ >TCONS_00070025 ID=TCONS_00070025|Name=TCONS_00070025|organism=Clytia hemisphaerica|type=CDS|length=13332bp|location=Sequence derived from alignment at scaffold_512:261967..277259+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070025 vs. Swiss-Prot (Human)
Match: PCAT2 (Lysophosphatidylcholine acyltransferase 2 OS=Homo sapiens GN=LPCAT2 PE=1 SV=1) HSP 1 Score: 315.079 bits (806), Expect = 2.073e-101 Identity = 160/401 (39.90%), Postives = 248/401 (61.85%), Query Frame = 1
Query: 13 FASLFAKICLIGYTPSDSPEPFTGFRR-VGQYLLWGVARFLLFVYGFWYIPTKGRLSDIKHAPVVVVAPHTSLMDGLLLSTLRTLFSAVGRHENNQIFLIGSILQMIQPLTVNRTQKNSKQRVVKEIDRRVK--GNWPRLVIFPEGTTTNHQAFVTFKPGAFYPGLPVQPILLKFKDKLDYASWTWMGPSTREVLFVMMSRLINRAEVEVLPTYHPTQAEKADPFLFSRNVRDYMGKAAKVPVTDHSYEDCRLMQTAHSLGLPMDAGLVEYYKLSPMIGMNCDCMIDYMKKFAEI-DSSKDGKLDLEEFCDYLHLPISSEEVKTIFRIYDIDGDNLITFREYLLGFTLISRPFNTEENIETAFAMFDPDNTGHIEYDNFSTPIQSVLPIEEKHIKLIYKNM 1203
FA++ C P P TG+RR + Q L + R + F GF + KG+++ APV V APH++ DG+ + L S V R+EN Q+ LIG +L+ +QP+ V+R +S++ + EI +R G WP++++FPEGT TN +TFKPGAF PG+PVQP+LL++ +KLD +WTW G + ++ + +L + EVE +P P EK DP LF+ VR+ M +A +PVTDH+YEDCRLM +A L LPM+AGLVE+ K+S + ++ D + ++ ++A I SSK G++ +EEF YL LP+ S+ ++ +F ++D + D I FREY++G ++ P NTEE I+ AF +FD D G+I + FST +Q+ L + + + ++K +
Sbjct: 83 FAAISTVCC-----PEKLTHPITGWRRKITQTALKFLGRAMFFSMGF-IVAVKGKIASPLEAPVFVAAPHSTFFDGIA-CVVAGLPSMVSRNENAQVPLIGRLLRAVQPVLVSRVDPDSRKNTINEIIKRTTSGGEWPQILVFPEGTCTNRSCLITFKPGAFIPGVPVQPVLLRYPNKLDTVTWTWQGYTFIQLCMLTFCQLFTKVEVEFMPVQVPNDEEKNDPVLFANKVRNLMAEALGIPVTDHTYEDCRLMISAGQLTLPMEAGLVEFTKISRKLKLDWDGVRKHLDEYASIASSSKGGRIGIEEFAKYLKLPV-SDVLRQLFALFDRNHDGSIDFREYVIGLAVLCNPSNTEEIIQVAFKLFDVDEDGYITEEEFSTILQASLGVPDLDVSGLFKEI 475 The following BLAST results are available for this feature:
BLAST of TCONS_00070025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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