TCONS_00070007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070007
Unique NameTCONS_00070007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length933

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070007 ID=TCONS_00070007|Name=TCONS_00070007|organism=Clytia hemisphaerica|type=transcript|length=933bp
CGCCTGATAAGACCAGCCATTGAATTAGCTTTTTTCACCTGATTTGATAT
GTGTTGGTCAAAGGGGAGATTCTTATCGATGATAACATCAAGATCTTTTT
CGAATGATACACGTTCAAGAATTTTATCCCCTAGTGTGTATTTGTGTACA
TGTTTGATATTATTTGGCTTTCCTAGTGTTAGCACATGACATTTGTTAGG
ATGAAAAGTTAATAGCCATGTATCGGACCACTTTTGTAGTTGGTTAATAT
CGTTTTGTATTACTAGTGCATCCTCAACTGATTCCACTTTATTGACGAGT
TTggtgtcgtcagcaaaaagGAATNACGGCTTTACCGTTTCCAATATCTT
CGGTGCAAGCATCTAGGTAGTTTAGTAATTGTGTTACAGTTGACCGGCGG
TTGATAAAGCCATGTTGTTTGCTAGATAGTAATTTCTCTTGATCAAGATA
TGTCATAATATGGGTTTTGAGAATCTTTTCCATTATTCGGTAAACTATAG
ATGTTAAACTGATTGGACGATAATTTTCtgctatgtttttgtttcctttt
ttatagACAGGTGATACGTTTGCAAGCTTCCAGTCATTCGGAAGACAACT
ctcattgaaagattttgtcatCATCAGGAAAATCGGTTCTGCGATGTATT
CAGCAAGCTCCTTGAGCATCCTTTGGTGAAGCTCATCTGGGCCGAGGGAT
TTATTtggatttaacttttttagttcttTCCTTATAGTTTCAGTGAGTAT
GTTGATCTCAACTTCTTTATCCGTCCTAGAATCAAATTCAGGGAGCTCCT
CGAGTGGCTCACGCGTAAAAACACTACGAGATTGGTTCTGGAGGATGTCA
GCTTTACTTTTATCGTCATACTTAATGGAGTTTTCGTCATTTGGATTCTC
AAGCAGAGGGTGGATTCCAGATCTTGCCTTAAG
Run BLAST on NCBI

protein sequence of TCONS_00070007-protein

>TCONS_00070007-protein ID=TCONS_00070007-protein|Name=TCONS_00070007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
LKARSGIHPLLENPNDENSIKYDDKSKADILQNQSRSVFTREPLEELPEF
DSRTDKEVEINILTETIRKELKKLNPNKSLGPDELHQRMLKELAEYIAEP
IFLMMTKSFNESCLPNDWKLANVSPVYKKGNKNIAENYRPISLTSIVYRI
MEKILKTHIMTYLDQEKLLSSKQHGFINRRSTVTQLLNYLDACTEDIGNG
KAXIPFC
Run BLAST on NCBI

transcript from alignment at scaffold_511:628668..629600

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070007 ID=TCONS_00070007|Name=TCONS_00070007|organism=Clytia hemisphaerica|type=transcript|length=933bp|location=Sequence derived from alignment at scaffold_511:628668..629600 (Clytia hemisphaerica)
CTTAAGGCAAGATCTGGAATCCACCCTCTGCTTGAGAATCCAAATGACGA
AAACTCCATTAAGTATGACGATAAAAGTAAAGCTGACATCCTCCAGAACC
AATCTCGTAGTGTTTTTACGCGTGAGCCACTCGAGGAGCTCCCTGAATTT
GATTCTAGGACGGATAAAGAAGTTGAGATCAACATACTCACTGAAACTAT
AAGGAaagaactaaaaaagttaaatccaAATAAATCCCTCGGCCCAGATG
AGCTTCACCAAAGGATGCTCAAGGAGCTTGCTGAATACATCGCAGAACCG
ATTTTCCTGATGatgacaaaatctttcaatgagAGTTGTCTTCCGAATGA
CTGGAAGCTTGCAAACGTATCACCTGTctataaaaaaggaaacaaaaaca
tagcaGAAAATTATCGTCCAATCAGTTTAACATCTATAGTTTACCGAATA
ATGGAAAAGATTCTCAAAACCCATATTATGACATATCTTGATCAAGAGAA
ATTACTATCTAGCAAACAACATGGCTTTATCAACCGCCGGTCAACTGTAA
CACAATTACTAAACTACCTAGATGCTTGCACCGAAGATATTGGAAACGGT
AAAGCCGTNATTCctttttgctgacgacaccAAACTCGTCAATAAAGTGG
AATCAGTTGAGGATGCACTAGTAATACAAAACGATATTAACCAACTACAA
AAGTGGTCCGATACATGGCTATTAACTTTTCATCCTAACAAATGTCATGT
GCTAACACTAGGAAAGCCAAATAATATCAAACATGTACACAAATACACAC
TAGGGGATAAAATTCTTGAACGTGTATCATTCGAAAAAGATCTTGATGTT
ATCATCGATAAGAATCTCCCCTTTGACCAACACATATCAAATCAGGTGAA
AAAAGCTAATTCAATGGCTGGTCTTATCAGGCG

Coding sequence (CDS) from alignment at scaffold_511:628668..629600

>TCONS_00070007 ID=TCONS_00070007|Name=TCONS_00070007|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_511:628668..629600 (Clytia hemisphaerica)
CTTAAGGCAAGATCTGGAATCCACCCTCTGCTTGAGAATCCAAATGACGA
AAACTCCATTAAGTATGACGATAAAAGTAAAGCTGACATCCTCCAGAACC
AATCTCGTAGTGTTTTTACGCGTGAGCCACTCGAGGAGCTCCCTGAATTT
GATTCTAGGACGGATAAAGAAGTTGAGATCAACATACTCACTGAAACTAT
AAGGAaagaactaaaaaagttaaatccaAATAAATCCCTCGGCCCAGATG
AGCTTCACCAAAGGATGCTCAAGGAGCTTGCTGAATACATCGCAGAACCG
ATTTTCCTGATGatgacaaaatctttcaatgagAGTTGTCTTCCGAATGA
CTGGAAGCTTGCAAACGTATCACCTGTctataaaaaaggaaacaaaaaca
tagcaGAAAATTATCGTCCAATCAGTTTAACATCTATAGTTTACCGAATA
ATGGAAAAGATTCTCAAAACCCATATTATGACATATCTTGATCAAGAGAA
ATTACTATCTAGCAAACAACATGGCTTTATCAACCGCCGGTCAACTGTAA
CACAATTACTAAACTACCTAGATGCTTGCACCGAAGATATTGGAAACGGT
AAAGCCGTNATTCctttttgctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043586XLOC_043586Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070007-exon-scaffold_511-1491911889:628668..629600TCONS_00070007-exon-scaffold_511-1491911889:628668..629600Clytia hemisphaericaexon
TCONS_00070007-exon-scaffold_511-1510915933:628668..629600TCONS_00070007-exon-scaffold_511-1510915933:628668..629600Clytia hemisphaericaexon
TCONS_00070007-exon-scaffold_511-1575043694:628668..629600TCONS_00070007-exon-scaffold_511-1575043694:628668..629600Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070007-proteinTCONS_00070007-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:628668..629600 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.78593	1.26256	1.97862	2.56111	1.24541	1.10595	0.871661	1.16936	1.62984	2.38022	10.3802	1.38372	1.64457	1.31549	0.989611	1.49518	0.695365	1.21477	1.21595	1.6885	2.43253	1.96541	0.313102	0.638031	1.24924	0.78038	1.4104	1.20054	2.04891	1.51761
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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