TCONS_00070006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070006
Unique NameTCONS_00070006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070006 ID=TCONS_00070006|Name=TCONS_00070006|organism=Clytia hemisphaerica|type=transcript|length=671bp
ATTTTCTAAAACCAAACCTAAAGTGGGACCATTATTAGATCCCATCACAA
ATAAGCTAACAGACAATAACCTTCAGATGGCCAATATACTTCAAGATTAA
TATAAATCTGTATTCACACCACCAAAATCACAATATGAAAATCCTGATCT
CAATCCTTCGCAAGTTACGGAGAAACTTGATTAATTTGACCTCACAGAGG
ACGACTTTATTAGAGAGATACAAACCCTCTCTTCAAACTCAGCTGCTGGC
CCAGATGGCTTTCCAGCTATATTTCTACTCAAAAACAAATCACAGCTTGC
AAAACCACTCAGATTGATATGGCAGAACATTCTTGACAAAGGATTCACTC
CAAAGATACTGAACACAATTTACATCAcccctattttcaaaaaaggaaat
caAGGATTGGCTGAAAACTATCGCCCTTACATCACACGTCActtaagttt
ttgaaaagattgtaaGAAAAAATTTGCAAGATCATCTGGAAAGAAACAAC
CTCTACAACAGCAACCAACATGGATTTAGGTCAGGAAGATCCTGCTTAAG
CCAACTGCTTGCTCACGCTGAACGTCTAATCCACTATATTGAAAATGGCT
ACAATGTAGATGTCATCTATCTTGATTTCAGTAAAGAATTTGACCGTGTT
GATCACTCGATACTGCTGCAG
Run BLAST on NCBI

transcript from alignment at scaffold_511:623032..623702

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070006 ID=TCONS_00070006|Name=TCONS_00070006|organism=Clytia hemisphaerica|type=transcript|length=671bp|location=Sequence derived from alignment at scaffold_511:623032..623702 (Clytia hemisphaerica)
CTGCAGCAGTATCGAGTGATCAACACGGTCAAATTCTTTACTGAAATCAA
GATAGATGACATCTACATTGTAGCCATTTTCAATATAGTGGATTAGACGT
TCAGCGTGAGCAAGCAGTTGGCTTAAGCAGGATCTTCCTGACCTAAATCC
ATGTTGGTTGCTGTTGTAGAGGTTGTTTCTTTCCAGATGATCTTGCAAAT
TTTTTCttacaatcttttcaaaaacttaagTGACGTGTGATGTAAGGGCG
ATAGTTTTCAGCCAATCCTtgatttccttttttgaaaataggggTGATGT
AAATTGTGTTCAGTATCTTTGGAGTGAATCCTTTGTCAAGAATGTTCTGC
CATATCAATCTGAGTGGTTTTGCAAGCTGTGATTTGTTTTTGAGTAGAAA
TATAGCTGGAAAGCCATCTGGGCCAGCAGCTGAGTTTGAAGAGAGGGTTT
GTATCTCTCTAATAAAGTCGTCCTCTGTGAGGTCAAATTAATCAAGTTTC
TCCGTAACTTGCGAAGGATTGAGATCAGGATTTTCATATTGTGATTTTGG
TGGTGTGAATACAGATTTATATTAATCTTGAAGTATATTGGCCATCTGAA
GGTTATTGTCTGTTAGCTTATTTGTGATGGGATCTAATAATGGTCCCACT
TTAGGTTTGGTTTTAGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043585XLOC_043585Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070006-exon-scaffold_511-1491911889:623032..623702TCONS_00070006-exon-scaffold_511-1491911889:623032..623702Clytia hemisphaericaexon
TCONS_00070006-exon-scaffold_511-1510915933:623032..623702TCONS_00070006-exon-scaffold_511-1510915933:623032..623702Clytia hemisphaericaexon
TCONS_00070006-exon-scaffold_511-1575043694:623032..623702TCONS_00070006-exon-scaffold_511-1575043694:623032..623702Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:623032..623702 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.30361	0.178498	1.47042	0.348128	1.89589	0.976618	1.80417	2.15271	1.95399	1.30345	1.27234	0.829245	2.10772	1.69734	0.889847	1.16815	2.88516	1.26473	3.31786	4.80146	0.620721	0.399913	0.804116	0.80386	1.64394	0.478071	0.562549	2.70223	0.0208275	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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