TCONS_00070002 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070002
Unique NameTCONS_00070002
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070002 ID=TCONS_00070002|Name=TCONS_00070002|organism=Clytia hemisphaerica|type=transcript|length=564bp
CAATCAGAACGGATTATCTCTGGATTTCCTCTTCTGTTGATAAATCGGTC
CAGAACATTAATGAAATCGTCAGCTTCTAATGATGGTGAAACTTCAATAA
GCACAGCTCTAATGACAAGGCATGTAAACAGACATCCCCATCGTTTGACT
TTGCTTCTCAGGACCCTCACTTGAATTGGTCCAAAGAAATCTACTCCGGT
GTGGAAAAACGTTGGGGCTCCCACAGCTATTCTGTCGACAGGTAGGTGTG
CCATCTTGACTTGGCCTGTTTTAGGTCTCCTCTTCTGGCACTTGACACAG
CTTCGAATAACTCTTTTGACGATGCTTCGGACAGCGATGATCCAGTACTG
TTGTCTCAGGAGTGATATGAGGTGTTCTGTGCCAACATGATGATTTTGCT
CGTGGTAATATCTTACAAGCAAGCGTACAGCATGATGATCTTTCGGCAAA
ATGATTTGATGCTTGGTAGCGTATGGAAGCATTCCTCGTTTCAGTCTGCC
GCCAACTCTCATCAGCCCGtcatttgtgtcgatgtaaggGTCTAGTTTGG
AGAGTTTTCCAAGG
Run BLAST on NCBI

protein sequence of TCONS_00070002-protein

>TCONS_00070002-protein ID=TCONS_00070002-protein|Name=TCONS_00070002-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
LGKLSKLDPYIDTNDGLMRVGGRLKRGMLPYATKHQIILPKDHHAVRLLV
RYYHEQNHHVGTEHLISLLRQQYWIIAVRSIVKRVIRSCVKCQKRRPKTG
QVKMAHLPVDRIAVGAPTFFHTGVDFFGPIQVRVLRSKVKRWGCLFTCLV
IRAVLIEVSPSLEADDFINVLDRFINRRGNPEIIRSD
Run BLAST on NCBI

transcript from alignment at scaffold_511:546165..546728

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070002 ID=TCONS_00070002|Name=TCONS_00070002|organism=Clytia hemisphaerica|type=transcript|length=564bp|location=Sequence derived from alignment at scaffold_511:546165..546728 (Clytia hemisphaerica)
CCTTGGAAAACTCTCCAAACTAGACccttacatcgacacaaatgaCGGGC
TGATGAGAGTTGGCGGCAGACTGAAACGAGGAATGCTTCCATACGCTACC
AAGCATCAAATCATTTTGCCGAAAGATCATCATGCTGTACGCTTGCTTGT
AAGATATTACCACGAGCAAAATCATCATGTTGGCACAGAACACCTCATAT
CACTCCTGAGACAACAGTACTGGATCATCGCTGTCCGAAGCATCGTCAAA
AGAGTTATTCGAAGCTGTGTCAAGTGCCAGAAGAGGAGACCTAAAACAGG
CCAAGTCAAGATGGCACACCTACCTGTCGACAGAATAGCTGTGGGAGCCC
CAACGTTTTTCCACACCGGAGTAGATTTCTTTGGACCAATTCAAGTGAGG
GTCCTGAGAAGCAAAGTCAAACGATGGGGATGTCTGTTTACATGCCTTGT
CATTAGAGCTGTGCTTATTGAAGTTTCACCATCATTAGAAGCTGACGATT
TCATTAATGTTCTGGACCGATTTATCAACAGAAGAGGAAATCCAGAGATA
ATCCGTTCTGATTG

Coding sequence (CDS) from alignment at scaffold_511:546165..546728

>TCONS_00070002 ID=TCONS_00070002|Name=TCONS_00070002|organism=Clytia hemisphaerica|type=CDS|length=561bp|location=Sequence derived from alignment at scaffold_511:546165..546728 (Clytia hemisphaerica)
CTTGGAAAACTCTCCAAACTAGACccttacatcgacacaaatgaCGGGCT
GATGAGAGTTGGCGGCAGACTGAAACGAGGAATGCTTCCATACGCTACCA
AGCATCAAATCATTTTGCCGAAAGATCATCATGCTGTACGCTTGCTTGTA
AGATATTACCACGAGCAAAATCATCATGTTGGCACAGAACACCTCATATC
ACTCCTGAGACAACAGTACTGGATCATCGCTGTCCGAAGCATCGTCAAAA
GAGTTATTCGAAGCTGTGTCAAGTGCCAGAAGAGGAGACCTAAAACAGGC
CAAGTCAAGATGGCACACCTACCTGTCGACAGAATAGCTGTGGGAGCCCC
AACGTTTTTCCACACCGGAGTAGATTTCTTTGGACCAATTCAAGTGAGGG
TCCTGAGAAGCAAAGTCAAACGATGGGGATGTCTGTTTACATGCCTTGTC
ATTAGAGCTGTGCTTATTGAAGTTTCACCATCATTAGAAGCTGACGATTT
CATTAATGTTCTGGACCGATTTATCAACAGAAGAGGAAATCCAGAGATAA
TCCGTTCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043581XLOC_043581Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070002-proteinTCONS_00070002-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070002-exon-scaffold_511-1491911889:546165..546728TCONS_00070002-exon-scaffold_511-1491911889:546165..546728Clytia hemisphaericaexon
TCONS_00070002-exon-scaffold_511-1510915933:546165..546728TCONS_00070002-exon-scaffold_511-1510915933:546165..546728Clytia hemisphaericaexon
TCONS_00070002-exon-scaffold_511-1575043694:546165..546728TCONS_00070002-exon-scaffold_511-1575043694:546165..546728Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:546165..546728 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32631	1.34924	1.07737	0.221407	0	0.106498	0.25697	0	0	0.417257	0.2025	0.0665577	0.199395	0.242347	0.453982	0.396982	0.150045	0.185134	0	0.555839	0.19325	0.282782	0.285161	0.119731	0	0.0957611	0.150077	0.146246	0.221845	0.226025
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015416Znf_H2C2_histone_UAS-bd
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070002 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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