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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070001 ID=TCONS_00070001|Name=TCONS_00070001|organism=Clytia hemisphaerica|type=transcript|length=970bp
GATACAGTTCCTTCACTCTCGATCCTGACATAAGCTAACGCAGCAAATGC
CTTCTCGGAAGCGTCACAAAAGATATGTAGTTGCACGTCTTGGTCACCTT
CAAGGTTGCGACTTCGTGGGATAGCAACAGTGGATGCAATGTCAGACATT
CGACAAAGCCAATCTTCATAACGATTTTTGAGAGATTTGGAAACTTCCTC
GTCCCATTCAATTTTATCTCTCCATAGTTCTTGCATGAAAAGTTTGGCGA
CAAGTGTGATTGGTGTCAAGAGGCCAAGTGGATCGTAGATAGTCGCTGTC
TTCTTGAGGATGGATCTCTTGGTACATGGCTTTGATCGATCAACTTCAAC
ATTGACCTTGTAAACAAAACAATCTGTTTCAAGGTCCCAGTGAACGCCTA
GTGCTCTAGAAATGACCTTGTCGTCCAGTTTAATCCCAGTAGGTTGAGTA
GCAAGCTTTTCTGTTGGTAAGTCCTTCAAAACGGATTCGTCGTTACTTTG
GAACTTTGTCAGGTTGAAGCCTTTGTTGTTGAGAAGACTGATAACACCAT
GACTGGTCTCCTTGGTAGATGTAGCATTTGAATATGACATGAGTAAGTCA
TCGACATAGAAATTTATCAAGACAGCTTTGATGACTTCGGGTGGATAGTT
GTTAGCTTGATCTCTTGCAGCTCGTTGTAGGGCATAGGTCGCAGCACAGG
GAGAATCCGTCAGCCCAAAAATGTGTACGAGTAATTTATAGTGAGTGATC
AGGAGGTTTGTGAGACTTTGGATCGTCTCTCCACAGGAATCTGTTTGCAT
CCATGTCAGCCTTTTTTAATCTCACTTGACAAAACATAGCTTCGATATCA
GCAACTACAGCAACTCTATGGCGTCTAAATCGAAGCAAAACGCCAAGAAG
GCTGTTCAGTAGATCAGGACCACTGTACAGGTTGGAATTCAAGCTTTCTC
CATGTGACTGAGCAGCAGCG Run BLAST on NCBI protein sequence of TCONS_00070001-protein >TCONS_00070001-protein ID=TCONS_00070001-protein|Name=TCONS_00070001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MQTDSCGETIQSLTNLLITHYKLLVHIFGLTDSPCAATYALQRAARDQAN
NYPPEVIKAVLINFYVDDLLMSYSNATSTKETSHGVISLLNNKGFNLTKF
QSNDESVLKDLPTEKLATQPTGIKLDDKVISRALGVHWDLETDCFVYKVN
VEVDRSKPCTKRSILKKTATIYDPLGLLTPITLVAKLFMQELWRDKIEWD
EEVSKSLKNRYEDWLCRMSDIASTVAIPRSRNLEGDQDVQLHIFCDASEK
AFAALAYVRIESEGTV Run BLAST on NCBI transcript from alignment at scaffold_511:544247..545216 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070001 ID=TCONS_00070001|Name=TCONS_00070001|organism=Clytia hemisphaerica|type=transcript|length=970bp|location=Sequence derived from alignment at scaffold_511:544247..545216 (Clytia hemisphaerica)
CGCTGCTGCTCAGTCACATGGAGAAAGCTTGAATTCCAACCTGTACAGTG
GTCCTGATCTACTGAACAGCCTTCTTGGCGTTTTGCTTCGATTTAGACGC
CATAGAGTTGCTGTAGTTGCTGATATCGAAGCTATGTTTTGTCAAGTGAG
ATTAAAAAAGGCTGACATGGATGCAAACAGATTCCTGTGGAGAGACGATC
CAAAGTCTCACAAACCTCCTGATCACTCACTATAAATTACTCGTACACAT
TTTTGGGCTGACGGATTCTCCCTGTGCTGCGACCTATGCCCTACAACGAG
CTGCAAGAGATCAAGCTAACAACTATCCACCCGAAGTCATCAAAGCTGTC
TTGATAAATTTCTATGTCGATGACTTACTCATGTCATATTCAAATGCTAC
ATCTACCAAGGAGACCAGTCATGGTGTTATCAGTCTTCTCAACAACAAAG
GCTTCAACCTGACAAAGTTCCAAAGTAACGACGAATCCGTTTTGAAGGAC
TTACCAACAGAAAAGCTTGCTACTCAACCTACTGGGATTAAACTGGACGA
CAAGGTCATTTCTAGAGCACTAGGCGTTCACTGGGACCTTGAAACAGATT
GTTTTGTTTACAAGGTCAATGTTGAAGTTGATCGATCAAAGCCATGTACC
AAGAGATCCATCCTCAAGAAGACAGCGACTATCTACGATCCACTTGGCCT
CTTGACACCAATCACACTTGTCGCCAAACTTTTCATGCAAGAACTATGGA
GAGATAAAATTGAATGGGACGAGGAAGTTTCCAAATCTCTCAAAAATCGT
TATGAAGATTGGCTTTGTCGAATGTCTGACATTGCATCCACTGTTGCTAT
CCCACGAAGTCGCAACCTTGAAGGTGACCAAGACGTGCAACTACATATCT
TTTGTGACGCTTCCGAGAAGGCATTTGCTGCGTTAGCTTATGTCAGGATC
GAGAGTGAAGGAACTGTATC Coding sequence (CDS) from alignment at scaffold_511:544247..545216 >TCONS_00070001 ID=TCONS_00070001|Name=TCONS_00070001|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_511:544247..545216 (Clytia hemisphaerica)
ATGCAAACAGATTCCTGTGGAGAGACGATCCAAAGTCTCACAAACCTCCT
GATCACTCACTATAAATTACTCGTACACATTTTTGGGCTGACGGATTCTC
CCTGTGCTGCGACCTATGCCCTACAACGAGCTGCAAGAGATCAAGCTAAC
AACTATCCACCCGAAGTCATCAAAGCTGTCTTGATAAATTTCTATGTCGA
TGACTTACTCATGTCATATTCAAATGCTACATCTACCAAGGAGACCAGTC
ATGGTGTTATCAGTCTTCTCAACAACAAAGGCTTCAACCTGACAAAGTTC
CAAAGTAACGACGAATCCGTTTTGAAGGACTTACCAACAGAAAAGCTTGC
TACTCAACCTACTGGGATTAAACTGGACGACAAGGTCATTTCTAGAGCAC
TAGGCGTTCACTGGGACCTTGAAACAGATTGTTTTGTTTACAAGGTCAAT
GTTGAAGTTGATCGATCAAAGCCATGTACCAAGAGATCCATCCTCAAGAA
GACAGCGACTATCTACGATCCACTTGGCCTCTTGACACCAATCACACTTG
TCGCCAAACTTTTCATGCAAGAACTATGGAGAGATAAAATTGAATGGGAC
GAGGAAGTTTCCAAATCTCTCAAAAATCGTTATGAAGATTGGCTTTGTCG
AATGTCTGACATTGCATCCACTGTTGCTATCCCACGAAGTCGCAACCTTG
AAGGTGACCAAGACGTGCAACTACATATCTTTTGTGACGCTTCCGAGAAG
GCATTTGCTGCGTTAGCTTATGTCAGGATCGAGAGTGAAGGAACTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070001-exon-scaffold_511-1491911889:544247..545216 | TCONS_00070001-exon-scaffold_511-1491911889:544247..545216 | Clytia hemisphaerica | exon |
| TCONS_00070001-exon-scaffold_511-1510915933:544247..545216 | TCONS_00070001-exon-scaffold_511-1510915933:544247..545216 | Clytia hemisphaerica | exon |
| TCONS_00070001-exon-scaffold_511-1575043694:544247..545216 | TCONS_00070001-exon-scaffold_511-1575043694:544247..545216 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:544247..545216 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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