TCONS_00069982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069982
Unique NameTCONS_00069982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069982 ID=TCONS_00069982|Name=TCONS_00069982|organism=Clytia hemisphaerica|type=transcript|length=2554bp
ATTCTCTTCAATCTTCCTGTTTAAAGCATCctttttcagttttgatttta
CCTCAGTATCAAAAGGAATAAAATCGACATTTACTAGCTCTAgctcaaag
tgtcaaaaaaagATGAAAGAACTAGTACAGTAATTTGTCAAATATATATA
GAATATAGAAAAATACcatgaaattaaaatttattttgaatgatCTTTAT
AAAAAATACCCCATCTCACCCCAATCGTATACAAAAAGATATAAATCAAA
GTTCtataattgaaatgaaaataaagaaataatatttaataaaaaaattg
tttgaatacaccATTAAAGAAATCGTAGTGACTATGTTtaagattttcta
tttttcacaaTGTGTACTTGCATCAGATAATATCAGTCGTAATTATAATT
TTAAAGAGATGCAATATTGGAATCTATTTCAAATTCTAACATTGGTGGCG
ACCCTTTTGCTTTATTGTAGAATTGTAAATTACTTTGAGACCGATTTTAT
ACTAGCCCCAATAatacaaaagcaaaaaaaaattatacatgtGAAATCTA
GGTGCATGTTTTTAAAACCCACATCTTTGACTCAAAACGATGTTAGATGT
GCTGATAACTGCACAATTGGCCCCTGCAGTTGCCATAGGAAGGGAACAAG
CTTTAGACCAAACCCCTTTGACAGTGTCATAACATTCAACAACTTTGGTT
TCATTAACATCGACAAACTCTTCCTCATCTACACCATACTGGTCCACGAC
ACTTTCTGCCGAAACCATTCCACCAACTAAATATATCTTTCCATGATATG
cagctattcccatgtgggcACGAGGGACAGAGAAATCAGAGATACTATTC
CATTCATCTGTTTTGATGTCAAAAACTTCAGCTGTACGGTAATATGACCA
ACCAGCATATTCACCACCAAAAACAAAGATACGATCTCCAATACAACAGG
CACTTGCGAAAGCCCTGGGAGAATTCATTGGAAATATTTTAGCCCATTGA
TTTTGATAAGGGTCAAAGCGCTCAACACTTGCCAATGACTGACCATCTGG
GCCATAACCACCAATAACATAAAGTTGATTATGGACAGCAACTGTAGCAT
CACGTCGGGGAATGAGAAGGTTTTTCACTTCCATCCAAACACCTCTTTTA
ATAGAATATTTCCAAACATTGTTTGAAATAGTGTCATCTTCACTACCCCc
aatgacataaatttcaccATTAAACACACAACTGACATGACCCGAAATTG
GATCAGGGAATGGAGAGCTATCAATCCACCTATCCATTGCAAATGAATAT
CTCTCAATATTCTTGATTGGTGAGATTCCCTCAAACATTCCTCCAATACA
ATAGACTTCATTGTTGAGGACAGCAGATGAACTTTTATATCTTGATTTCA
TAAGTGGTGCTAAAGGATACCAGAAATCTTGGCTTGGCACATAACATAAC
ACTTCATTTGAGCTCATTCTTTCTTGATTACCACCACATGCTAAAATCAC
TTCACAAATATCTGAAAAATCTCTTGGTTTACCAAGATTATTGTGGCAAA
ACATATGCTTTCGGTCAGGCAGTgttaaaacatttttgcaattttgaatG
AGATCTTTACAATCAGGGTTAGCCATGAGAATTTCATCTTTTTCAAGAAC
ATCAATTACAAAGTATTTACTGAGTAATAAAAGTCTGATACAACTCAAAA
GTTTGTTTATGTACACTTTCCGATTTGGCAAATCATAATGCATCCATTCC
ATAGCAGCAGTAAAAATTTGTTCTTCTCTATTGGCATTGATCTCATCAGA
TTGAAGTATGCTGATAAGATGCTCAATGTCAAGACCCTGAAACTCATGAA
ACTTGCTGACTTCTAAGAAATGATCAAGAATGAATTTGTCAGCAGCTTTC
CTCAGTGAATCACAATTGAATTCATTGGCAAGAGCAGCAATTGAAAGACA
ATTAGCTGGACAAAGTCTTTTCTCATAGAATCGACATGTCAGTTCTTTAA
GTTTTTGCATACGCAAAATTTCAGATgcagcaatgagttttctaacATTT
TCTTCACTGACACACACTTCACCAATATaaataaagtttaaaatatCCTC
AAAAACATCAGCACTTATGGTTTTAATTTCAATCCTTGAACCAAGAGAAG
TGCTATTTGAGTCAAAGCTCTCTTTTTCTGCTGGACTTGTGACTGTTAAC
CGTTCCAGAATGTAAGGACTTGCAGCACATACAACATTTCGGTGggcaaa
aaattcttttggtgGAGATATTAAAATCAAATCACACATTTTCTTTGACT
TTCTGAGGTCGTTCAAAGTATGTGCTAGAAATTTTGCATGATTAGAGTCA
ACGTACATTTCACCTTTTACTCCATCTAAAGAGAATTGTGCCGCCATTTT
CCACTCTTTCTTTCTTGGTCTTTTTTCTGGAACACCAAGTGCCAAGGTCG
AAGGTAAAGGTAAAGATCCACTGTCGGGCTGTCCGCCTTCTTCTCCCAAC
TCTTCTCCTCGCgagatttgttttctttttggattagCCTAATACTGAAC
TTAT
Run BLAST on NCBI

protein sequence of TCONS_00069982-protein

>TCONS_00069982-protein ID=TCONS_00069982-protein|Name=TCONS_00069982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=611bp
MAAQFSLDGVKGEMYVDSNHAKFLAHTLNDLRKSKKMCDLILISPPKEFF
AHRNVVCAASPYILERLTVTSPAEKESFDSNSTSLGSRIEIKTISADVFE
DILNFIYIGEVCVSEENVRKLIAASEILRMQKLKELTCRFYEKRLCPANC
LSIAALANEFNCDSLRKAADKFILDHFLEVSKFHEFQGLDIEHLISILQS
DEINANREEQIFTAAMEWMHYDLPNRKVYINKLLSCIRLLLLSKYFVIDV
LEKDEILMANPDCKDLIQNCKNVLTLPDRKHMFCHNNLGKPRDFSDICEV
ILACGGNQERMSSNEVLCYVPSQDFWYPLAPLMKSRYKSSSAVLNNEVYC
IGGMFEGISPIKNIERYSFAMDRWIDSSPFPDPISGHVSCVFNGEIYVIG
GSEDDTISNNVWKYSIKRGVWMEVKNLLIPRRDATVAVHNQLYVIGGYGP
DGQSLASVERFDPYQNQWAKIFPMNSPRAFASACCIGDRIFVFGGEYAGW
SYYRTAEVFDIKTDEWNSISDFSVPRAHMGIAAYHGKIYLVGGMVSAESV
VDQYGVDEEEFVDVNETKVVECYDTVKGVWSKACSLPMATAGANCAVIST
SNIVLSQRCGF
Run BLAST on NCBI

transcript from alignment at scaffold_511:78112..80665

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069982 ID=TCONS_00069982|Name=TCONS_00069982|organism=Clytia hemisphaerica|type=transcript|length=2554bp|location=Sequence derived from alignment at scaffold_511:78112..80665 (Clytia hemisphaerica)
ATAAGTTCAGTATTAGGctaatccaaaaagaaaacaaatctcGCGAGGAG
AAGAGTTGGGAGAAGAAGGCGGACAGCCCGACAGTGGATCTTTACCTTTA
CCTTCGACCTTGGCACTTGGTGTTCCAGAAAAAAGACCAAGAAAGAAAGA
GTGGAAAATGGCGGCACAATTCTCTTTAGATGGAGTAAAAGGTGAAATGT
ACGTTGACTCTAATCATGCAAAATTTCTAGCACATACTTTGAACGACCTC
AGAAAGTCAAAGAAAATGTGTGATTTGATTTTAATATCTCcaccaaaaga
attttttgccCACCGAAATGTTGTATGTGCTGCAAGTCCTTACATTCTGG
AACGGTTAACAGTCACAAGTCCAGCAGAAAAAGAGAGCTTTGACTCAAAT
AGCACTTCTCTTGGTTCAAGGATTGAAATTAAAACCATAAGTGCTGATGT
TTTTGAGGatattttaaactttatttATATTGGTGAAGTGTGTGTCAGTG
AAGAAAATgttagaaaactcattgctgcATCTGAAATTTTGCGTATGCAA
AAACTTAAAGAACTGACATGTCGATTCTATGAGAAAAGACTTTGTCCAGC
TAATTGTCTTTCAATTGCTGCTCTTGCCAATGAATTCAATTGTGATTCAC
TGAGGAAAGCTGCTGACAAATTCATTCTTGATCATTTCTTAGAAGTCAGC
AAGTTTCATGAGTTTCAGGGTCTTGACATTGAGCATCTTATCAGCATACT
TCAATCTGATGAGATCAATGCCAATAGAGAAGAACAAATTTTTACTGCTG
CTATGGAATGGATGCATTATGATTTGCCAAATCGGAAAGTGTACATAAAC
AAACTTTTGAGTTGTATCAGACTTTTATTACTCAGTAAATACTTTGTAAT
TGATGTTCTTGAAAAAGATGAAATTCTCATGGCTAACCCTGATTGTAAAG
ATCTCattcaaaattgcaaaaatgttttaacACTGCCTGACCGAAAGCAT
ATGTTTTGCCACAATAATCTTGGTAAACCAAGAGATTTTTCAGATATTTG
TGAAGTGATTTTAGCATGTGGTGGTAATCAAGAAAGAATGAGCTCAAATG
AAGTGTTATGTTATGTGCCAAGCCAAGATTTCTGGTATCCTTTAGCACCA
CTTATGAAATCAAGATATAAAAGTTCATCTGCTGTCCTCAACAATGAAGT
CTATTGTATTGGAGGAATGTTTGAGGGAATCTCACCAATCAAGAATATTG
AGAGATATTCATTTGCAATGGATAGGTGGATTGATAGCTCTCCATTCCCT
GATCCAATTTCGGGTCATGTCAGTTGTGTGTTTAATggtgaaatttatgt
cattgGGGGTAGTGAAGATGACACTATTTCAAACAATGTTTGGAAATATT
CTATTAAAAGAGGTGTTTGGATGGAAGTGAAAAACCTTCTCATTCCCCGA
CGTGATGCTACAGTTGCTGTCCATAATCAACTTTATGTTATTGGTGGTTA
TGGCCCAGATGGTCAGTCATTGGCAAGTGTTGAGCGCTTTGACCCTTATC
AAAATCAATGGGCTAAAATATTTCCAATGAATTCTCCCAGGGCTTTCGCA
AGTGCCTGTTGTATTGGAGATCGTATCTTTGTTTTTGGTGGTGAATATGC
TGGTTGGTCATATTACCGTACAGCTGAAGTTTTTGACATCAAAACAGATG
AATGGAATAGTATCTCTGATTTCTCTGTCCCTCGTgcccacatgggaata
gctgCATATCATGGAAAGATATATTTAGTTGGTGGAATGGTTTCGGCAGA
AAGTGTCGTGGACCAGTATGGTGTAGATGAGGAAGAGTTTGTCGATGTTA
ATGAAACCAAAGTTGTTGAATGTTATGACACTGTCAAAGGGGTTTGGTCT
AAAGCTTGTTCCCTTCCTATGGCAACTGCAGGGGCCAATTGTGCAGTTAT
CAGCACATCTAACATCGTTTTGAGTCAAAGATGTGGGTTTTAAAAACATG
CACCTAGATTTCacatgtataatttttttttgcttttgtatTATTGGGGC
TAGTATAAAATCGGTCTCAAAGTAATTTACAATTCTACAATAAAGCAAAA
GGGTCGCCACCAATGTTAGAATTTGAAATAGATTCCAATATTGCATCTCT
TTAAAATTATAATTACGACTGATATTATCTGATGCAAGTACACAttgtga
aaaatagaaaatcttaAACATAGTCACTACGATTTCTTTAATggtgtatt
caaacaatttttttattaaatattatttctttattttcatttcaattata
GAACTTTGATTTATATCTTTTTGTATACGATTGGGGTGAGATGGGGTATT
TTTTATAAAGatcattcaaaataaattttaatttcatgGTATTTTTCTAT
ATTCTATATATATTTGACAAATTACTGTACTAGTTCTTTCATcttttttt
gacactttgagcTAGAGCTAGTAAATGTCGATTTTATTCCTTTTGATACT
GAGGtaaaatcaaaactgaaaaagGATGCTTTAAACAGGAAGATTGAAGA
GAAT

Coding sequence (CDS) from alignment at scaffold_511:78112..80665

>TCONS_00069982 ID=TCONS_00069982|Name=TCONS_00069982|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at scaffold_511:78112..80665 (Clytia hemisphaerica)
ATGGCGGCACAATTCTCTTTAGATGGAGTAAAAGGTGAAATGTACGTTGA
CTCTAATCATGCAAAATTTCTAGCACATACTTTGAACGACCTCAGAAAGT
CAAAGAAAATGTGTGATTTGATTTTAATATCTCcaccaaaagaatttttt
gccCACCGAAATGTTGTATGTGCTGCAAGTCCTTACATTCTGGAACGGTT
AACAGTCACAAGTCCAGCAGAAAAAGAGAGCTTTGACTCAAATAGCACTT
CTCTTGGTTCAAGGATTGAAATTAAAACCATAAGTGCTGATGTTTTTGAG
GatattttaaactttatttATATTGGTGAAGTGTGTGTCAGTGAAGAAAA
TgttagaaaactcattgctgcATCTGAAATTTTGCGTATGCAAAAACTTA
AAGAACTGACATGTCGATTCTATGAGAAAAGACTTTGTCCAGCTAATTGT
CTTTCAATTGCTGCTCTTGCCAATGAATTCAATTGTGATTCACTGAGGAA
AGCTGCTGACAAATTCATTCTTGATCATTTCTTAGAAGTCAGCAAGTTTC
ATGAGTTTCAGGGTCTTGACATTGAGCATCTTATCAGCATACTTCAATCT
GATGAGATCAATGCCAATAGAGAAGAACAAATTTTTACTGCTGCTATGGA
ATGGATGCATTATGATTTGCCAAATCGGAAAGTGTACATAAACAAACTTT
TGAGTTGTATCAGACTTTTATTACTCAGTAAATACTTTGTAATTGATGTT
CTTGAAAAAGATGAAATTCTCATGGCTAACCCTGATTGTAAAGATCTCat
tcaaaattgcaaaaatgttttaacACTGCCTGACCGAAAGCATATGTTTT
GCCACAATAATCTTGGTAAACCAAGAGATTTTTCAGATATTTGTGAAGTG
ATTTTAGCATGTGGTGGTAATCAAGAAAGAATGAGCTCAAATGAAGTGTT
ATGTTATGTGCCAAGCCAAGATTTCTGGTATCCTTTAGCACCACTTATGA
AATCAAGATATAAAAGTTCATCTGCTGTCCTCAACAATGAAGTCTATTGT
ATTGGAGGAATGTTTGAGGGAATCTCACCAATCAAGAATATTGAGAGATA
TTCATTTGCAATGGATAGGTGGATTGATAGCTCTCCATTCCCTGATCCAA
TTTCGGGTCATGTCAGTTGTGTGTTTAATggtgaaatttatgtcattgGG
GGTAGTGAAGATGACACTATTTCAAACAATGTTTGGAAATATTCTATTAA
AAGAGGTGTTTGGATGGAAGTGAAAAACCTTCTCATTCCCCGACGTGATG
CTACAGTTGCTGTCCATAATCAACTTTATGTTATTGGTGGTTATGGCCCA
GATGGTCAGTCATTGGCAAGTGTTGAGCGCTTTGACCCTTATCAAAATCA
ATGGGCTAAAATATTTCCAATGAATTCTCCCAGGGCTTTCGCAAGTGCCT
GTTGTATTGGAGATCGTATCTTTGTTTTTGGTGGTGAATATGCTGGTTGG
TCATATTACCGTACAGCTGAAGTTTTTGACATCAAAACAGATGAATGGAA
TAGTATCTCTGATTTCTCTGTCCCTCGTgcccacatgggaatagctgCAT
ATCATGGAAAGATATATTTAGTTGGTGGAATGGTTTCGGCAGAAAGTGTC
GTGGACCAGTATGGTGTAGATGAGGAAGAGTTTGTCGATGTTAATGAAAC
CAAAGTTGTTGAATGTTATGACACTGTCAAAGGGGTTTGGTCTAAAGCTT
GTTCCCTTCCTATGGCAACTGCAGGGGCCAATTGTGCAGTTATCAGCACA
TCTAACATCGTTTTGAGTCAAAGATGTGGGTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043561XLOC_043561Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069982-proteinTCONS_00069982-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069982-exon-scaffold_511-1491911889:78112..80665TCONS_00069982-exon-scaffold_511-1491911889:78112..80665Clytia hemisphaericaexon
TCONS_00069982-exon-scaffold_511-1510915933:78112..80665TCONS_00069982-exon-scaffold_511-1510915933:78112..80665Clytia hemisphaericaexon
TCONS_00069982-exon-scaffold_511-1575043694:78112..80665TCONS_00069982-exon-scaffold_511-1575043694:78112..80665Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:78112..80665 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.1187	21.6873	7.21171	6.88794	17.8521	12.9462	18.1865	20.0488	13.361	14.2915	12.9367	12.6956	13.0201	12.4034	15.5494	16.8712	7.90472	7.64809	10.0999	8.75121	6.94814	6.69964	20.2436	20.2496	3.50858	6.5091	11.8869	10.7377	16.4227	17.5362
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006652Kelch_1
IPR000210BTB/POZ_dom
IPR011705BACK
IPR015915Kelch-typ_b-propeller
IPR017096BTB-kelch_protein
IPR011043Gal_Oxase/kelch_b-propeller
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00069982 vs. Swiss-Prot (Human)
Match: KLH20 (Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE=1 SV=4)

HSP 1 Score: 261.536 bits (667), Expect = 6.236e-76
Identity = 171/591 (28.93%), Postives = 288/591 (48.73%), Query Frame = -2 
Query:  592 YVDSNHAKFLAHTLNDLRKSKKMCDLILISPPKEFFAHRNVVCAASPYILERLTVTSPAEKESFDSNSTSLGSRIEIKTISADVFEDILNFIYIGEVCVSEENVRKLIAASEILRMQKLKELTCRFYEKRLCPANCLSIAALANEFNCDSLRKAADKFILDHFLEVSKFHEFQGLDIEHLISILQSDEINANREEQIFTAAMEWMHYDLPNRKVYINKXXXXXXXXXLSKYFVIDVLEKDEILMANPDCKDLIQNCKNVLTLPDRKHMFCHNNLGKPRDFSDICEVILACGGNQERMSSNEVLCYVPSQDFWYPLAPLMKSRYKSSSAVLNNEVYCIGGMFEGISPIKNIERYSFAMDRW-IDSSPFPDPISGHVSCVFNGEIYVIGGSEDDTISNNVWKYSIKRGVWMEVKNLLIPRRDATVAVHNQ-LYVIGGYGPDGQS-LASVERFDPYQNQWAKIFPMNSPRAFASACCIGDRIFVFGGEYAGWSYYRTAEVFDIKTDEWNSISDFSVPRAHMGIAAYHGKIYLVGGMVSAESVVDQYGVDEEEFVDVNETKVVECYDTVKGVWSKACSLPMATAGANCAVISTSN 2355
            Y+   H +     +N LRK +++CD++L+   K+ +AHR ++ A SPY     T       E  +S  T     + I+ I     E +++F Y  ++ V E NV+ L+ A+ +L++ +++E  C F +++L P+NCL I A A+  +C  L + ADKF   +F EV +  EF  L    LI I+ SDE+N   EEQ+F A M W+ Y +  R+  + ++L  +RL LLS  F++  +  D ++ ++ +C+DL+   KN L LP  + +       +PR      EV+ A GG     + + V  Y P  + W  +A + K R     +VL++ +Y +GG  +G S + ++ERY    ++W  D +P     +     V  G +Y +GG +  +  N V +Y  K   W  V ++   R    VAV    LY +G  G DG S L +VER++P +N+W  I PM + R         D I+  GG     +   +AE ++ +T++W+ +   +  R+ +G+A  +G++  VGG                 F      K +E +D     W     +     G    VI  ++
Sbjct:   45 YISDKHPRQTLEVINLLRKHRELCDVVLVVGAKKIYAHRVILSACSPYFRAMFT------GELAESRQTE----VVIRDIDERAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAFADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVMAWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLLPQERPLM-QGPRTRPRKPIRCGEVLFAVGGWCSGDAISSVERYDPQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGG-HDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVG--GSDGTSPLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGR-DDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVNGQLMAVGG-----------------FDGTTYLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVIKMTH 603
The following BLAST results are available for this feature:
BLAST of TCONS_00069982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLH206.236e-7628.93Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE... [more]
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