TCONS_00069951 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069951
Unique NameTCONS_00069951
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069951 ID=TCONS_00069951|Name=TCONS_00069951|organism=Clytia hemisphaerica|type=transcript|length=406bp
CATAAGTCTTGTCTAGTAACAAAGATATAAAGAATAACAAATAGCTGAAA
TGTATTATTAAGAATATATAGCGTCCATGTTTTAAGTCCCTAAAAtgtgg
agaaaaaaaattctaatacaAATTAAATTACAACTACAAAAACTTTAACT
TAATTTAAAAAGTCTCAATAAGTAGAAAAGACCTAATTGGACAAAGTAGC
AAACAATTTGTTAACTTTATGTATCACGAAACCACCCGGTAAAACCACTT
AAAAGGCACTAAAACCAATTCTATTTTCACATTATAGGTATATTTTCAAC
AGTGGTATCGCTCAACAtggatattttgaaatattgaaaaaaccTCGTAT
AgatgtcatcaaaaatttgaatattgaaaacaaaactgacgAAGGAAACT
GGGAAC
Run BLAST on NCBI

transcript from alignment at scaffold_511:80942..81347-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069951 ID=TCONS_00069951|Name=TCONS_00069951|organism=Clytia hemisphaerica|type=transcript|length=406bp|location=Sequence derived from alignment at scaffold_511:80942..81347- (Clytia hemisphaerica)
CATAAGTCTTGTCTAGTAACAAAGATATAAAGAATAACAAATAGCTGAAA
TGTATTATTAAGAATATATAGCGTCCATGTTTTAAGTCCCTAAAATGTGG
AGAAAAAAAATTCTAATACAAATTAAATTACAACTACAAAAACTTTAACT
TAATTTAAAAAGTCTCAATAAGTAGAAAAGACCTAATTGGACAAAGTAGC
AAACAATTTGTTAACTTTATGTATCACGAAACCACCCGGTAAAACCACTT
AAAAGGCACTAAAACCAATTCTATTTTCACATTATAGGTATATTTTCAAC
AGTGGTATCGCTCAACATGGATATTTTGAAATATTGAAAAAACCTCGTAT
AGATGTCATCAAAAATTTGAATATTGAAAACAAAACTGACGAAGGAAACT
GGGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043542XLOC_043542Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069951-exon-scaffold_511-1575043694:80942..81347TCONS_00069951-exon-scaffold_511-1575043694:80942..81347Clytia hemisphaericaexon
TCONS_00069951-exon-scaffold_511-1510915933:80942..81347TCONS_00069951-exon-scaffold_511-1510915933:80942..81347Clytia hemisphaericaexon
TCONS_00069951-exon-scaffold_511-1491911889:80942..81347TCONS_00069951-exon-scaffold_511-1491911889:80942..81347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:80942..81347 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.54027	1.49465	1.22344	1.59593	0.485723	0	0.694603	0.650279	0.607034	1.10836	0.182455	1.66274	0.718633	1.36244	0.567369	1.0569	0.725376	0.308259	1.58312	0.34662	0.717615	1.38628	1.75355	2.60451	0	0	2.51371	1.25264	1.91249	2.07307
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069951 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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