TCONS_00069946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069946
Unique NameTCONS_00069946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069946 ID=TCONS_00069946|Name=TCONS_00069946|organism=Clytia hemisphaerica|type=transcript|length=1696bp
gaaaaaagaaatatgttttgaaaaactttttcatcgatgaaaaaaagaac
atcaaTTCAAATTTGAGAAGTtgcttgaaaattgaaactaagaAGAAATT
ATTGTACCCCTGAAATGGGCCTAGTAAACCTTTTACTACAtttatcaata
atatttttggttttatcAGCCACTCCGCCCTTGAAATGCCACTATTGCCA
TGACTACGAAGAAGAATGTCTTAAAACAAATGACGTCACCTCATGCCCAG
GCTCCCAATATTCATGCCTGCTCCACTATgaagaaaccaaaattttgaat
gagGATGGCAGATATGATTTCAGTCGAACGGTGACACAAGATTGCGTGGT
CGAAAATCGAAATTATTGTGAGAATAGAATGAGATCGGACCCTGGGATTC
TATCGTGTAAAGCTTACTGGTGTTACAAAGACTTGTGTAATTTCCCTGCA
TCTAAAGAAGAAAAGACACAGGAAGAAATTACCAGCAATATAAGTGACGA
AGAAAGTAAAAGTGAAaaggaaaattcttcaaaaggaattattgttgata
aaaacaagaaatttgGACAGTTTACCAAATCAAAGGCTGAGATGTTGATG
GCCACTAAGCTGGTGGATTGCTTGACAGTGATTATTGTTTATAAGTTGCT
CGTTGTCCTTCTCTTCAGGTAGTTTTTGATAATTGGATGTATGTCTTCAA
TATTTGTGTGCACTGTACGGTATAGGTACCATAGCAATGGCAACAACAAT
TTGAGAAGACAGAGAGAAGATGAAAGTCAGGCAGATATGGATatttgaaa
actatttgaaaagaagaaggctacCTAAGGAAAGAATTATCTAGGAATCG
TAACCACCAGACTGGCTTCCCTGTAAAATTTCTTGAACCATCTGCTCATG
CAAAATTTAAAGATTCTAGCAATGTGAATTTAGGAGCGGGACTACAAACA
AATACTCTCCATTATTATTGACTTATGTCTTGTGCGATTTTCATGATGCA
ATGATTTTTCTATCATTGTGATATTTCATAGTATACAAAagaagaattat
tttatttaacaAAAATATGTAAGAAATTTCTAATTGCATATTAGACAAGC
TAAATTCTGTCCGAACCAAAGGTTGCCTCAACAGTCATCCATCGCTGTCT
TTTCCTCTTCATAGGATGTACCTCTTATGACCAATAGATATTCGCATTCA
TTTACCCCCATAACCCAGCAGATTCGAGGTCTTGTCTTTTATCCTCTTGA
ATTTCTACGATATTAAAATGTCTTAAAGCCTCGTCTACATCGAGACGCAA
CTTCACTAAGCTTTCTACCATAGCTTTATTATCGCGTTCTAACAAATCCG
AAATATCATTCGTTGTCATTATTTCCGGATCCTGTCGAGGTTTCAGTTGG
ACTCGCTTACTATAAAGTCTGACGTCATCAATGTCTCGCTTGCCCCATAA
CCCTTCACCAAGTTCTTCCTGTCGTTTCCCCCAAAGACCAGCATCTTCGG
TGTCTTGGTAAAGAGAGTTTCTCTTTCCCCATCGTATAGGGTTTGCTTCA
TACCCTGGCTCGTATGGTATTGAACGTTGATATTTGAGTGGATATGAGGG
TCGTAGGTAGGGTTGTGCGCTTGTTGTTGAAAAGAAGACAACCCCTAATG
TCAGCAATGTACATAGATGtgtactgaaaaaaaataaaagtctggt
Run BLAST on NCBI

protein sequence of TCONS_00069946-protein

>TCONS_00069946-protein ID=TCONS_00069946-protein|Name=TCONS_00069946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MGLVNLLLHLSIIFLVLSATPPLKCHYCHDYEEECLKTNDVTSCPGSQYS
CLLHYEETKILNEDGRYDFSRTVTQDCVVENRNYCENRMRSDPGILSCKA
YWCYKDLCNFPASKEEKTQEEITSNISDEESKSEKENSSKGIIVDKNKKF
GQFTKSKAEMLMATKLVDCLTVIIVYKLLVVLLFR
Run BLAST on NCBI

transcript from alignment at scaffold_511:58123..60618-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069946 ID=TCONS_00069946|Name=TCONS_00069946|organism=Clytia hemisphaerica|type=transcript|length=2496bp|location=Sequence derived from alignment at scaffold_511:58123..60618- (Clytia hemisphaerica)
GAAAAAAGAAATATGTTTTGAAAAACTTTTTCATCGATGAAAAAAAGAAC
ATCAATTCAAATTTGAGAAGTTGCTTGAAAATTGAAACTAAGAAGAAATT
ATTGTACCCCTGAAATGGGCCTAGTAAACCTTTTACTACATTTATCAATA
ATATTTTTGGTTTTATCAGGTATGCCTAGCCCGTTAATCCTAAATATATC
GGTTTTAGTCTTTAGCTTTAGCTGTTTATGCTTTAGTTAAAGGTTTTGTT
TTTAAGTAAGAGTGATATCGTTTGCTTGCTCGTCACTTTTAATTCACAAG
CTTTTTCACATTGAATTGACACGAATGTGGAGCAAGATTAGTCAGAAAAA
GGAAAAGAGAAAAATTTTTTTTTGCTTATATCAGCATAATATAACAAAAG
GTAGACACTGTCCTGAAATGAAATATGTGTCTGAAACGGGAACACTTATG
TAAAAATAAAACCTTTAGTGGTAAGTATAATAGTGGCTGTTATAATACTG
GAAAAGCTTGGTTAACTTCAGAGCATGCTGTCGGCTTTCTTTTTTTCGTA
CGTGAAAATTATCTGCAATGCAATAGATTTGGTTATTTTTGCGATCAAGA
AAGAATTTCTAAGGGTTTTTCCTTACTTCTCCGAAAACTTTAGTTGATTG
TGCTAAAAAGATTAGTCATGTTCACTTCCCTCTTTGTCATTTCAGCCACT
CCGCCCTTGAAATGCCACTATTGCCATGACTACGAAGAAGAATGTCTTAA
AACAAATGACGTCACCTCATGCCCAGGCTCCCAATATTCATGCCTGCTCC
ACTATGAAGAAACCAAAATTTTGAATGAGGATGGCAGATATGATTTCAGT
CGAACGGTGACACAAGATTGCGTGGTCGAAAATCGAAATTATTGTGAGAA
TAGAATGAGATCGGACCCTGGGATTCTATCGTGTAAAGTGAGTAACACTA
AGTTATTTTCAGATCAATGGAAAAAGAACTGTCAGATGAATTTTAATTCT
CTCACAATATTTTGAAGTGAGGGTTTTGTTTATTTGATTATAAGTTTTGT
GGGGATAAAAATTTGATATGATTTTCCATTGGGGACAATATTTTGAAAAA
TTTTTAAACAGTTGGAGAGGTCCCAATCAGGTCTGAAAATGGGGGTGTAT
TGAAAGTTTAACAGTCATGCACTATGTACTGAGATGACAACCATTGTATT
TTCCTTTACAGGCTTACTGGTGTTACAAAGACTTGTGTAATTTCCCTGCA
TCTAAAGAAGAAAAGACACAGGAAGAAATTACCAGCAATATAAGTGACGA
AGAAAGTAAAAGTGAAAAGGAAAATTCTTCAAAAGGAATTATTGTTGATA
AAAACAAGAAATTTGGACAGTTTACCAAATCAAAGGCTGAGATGTTGATG
GCCACTAAGCTGGTGGATTGCTTGACAGTGATTATTGTTTATAAGTTGCT
CGTTGTCCTTCTCTTCAGGTAGTTTTTGATAATTGGATGTATGTCTTCAA
TATTTGTGTGCACTGTACGGTATAGGTACCATAGCAATGGCAACAACAAT
TTGAGAAGACAGAGAGAAGATGAAAGTCAGGCAGATATGGATATTTGAAA
ACTATTTGAAAAGAAGAAGGCTACCTAAGGAAAGAATTATCTAGGAATCG
TAACCACCAGACTGGCTTCCCTGTAAAATTTCTTGAACCATCTGCTCATG
CAAAATTTAAAGATTCTAGCAATGTGAATTTAGGAGCGGGACTACAAACA
AATACTCTCCATTATTATTGACTTATGTCTTGTGCGATTTTCATGATGCA
ATGATTTTTCTATCATTGTGATATTTCATAGTATACAAAAGAAGAATTAT
TTTATTTAACAAAAATATGTAAGAAATTTCTAATTGCATATTAGACAAGC
TAAATTCTGTCCGAACCAAAGGTTGCCTCAACAGTCATCCATCGCTGTCT
TTTCCTCTTCATAGGATGTACCTCTTATGACCAATAGATATTCGCATTCA
TTTACCCCCATAACCCAGCAGATTCGAGGTCTTGTCTTTTATCCTCTTGA
ATTTCTACGATATTAAAATGTCTTAAAGCCTCGTCTACATCGAGACGCAA
CTTCACTAAGCTTTCTACCATAGCTTTATTATCGCGTTCTAACAAATCCG
AAATATCATTCGTTGTCATTATTTCCGGATCCTGTCGAGGTTTCAGTTGG
ACTCGCTTACTATAAAGTCTGACGTCATCAATGTCTCGCTTGCCCCATAA
CCCTTCACCAAGTTCTTCCTGTCGTTTCCCCCAAAGACCAGCATCTTCGG
TGTCTTGGTAAAGAGAGTTTCTCTTTCCCCATCGTATAGGGTTTGCTTCA
TACCCTGGCTCGTATGGTATTGAACGTTGATATTTGAGTGGATATGAGGG
TCGTAGGTAGGGTTGTGCGCTTGTTGTTGAAAAGAAGACAACCCCTAATG
TCAGCAATGTACATAGATGTGTACTGAAAAAAAATAAAAGTCTGGT

Coding sequence (CDS) from alignment at scaffold_511:58123..60618-

>TCONS_00069946 ID=TCONS_00069946|Name=TCONS_00069946|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_511:58123..60618- (Clytia hemisphaerica)
GCTTACTGGTGTTACAAAGACTTGTGTAATTTCCCTGCATCTAAAGAAGA
AAAGACACAGGAAGAAATTACCAGCAATATAAGTGACGAAGAAAGTAAAA
GTGAAAAGGAAAATTCTTCAAAAGGAATTATTGTTGATAAAAACAAGAAA
TTTGGACAGTTTACCAAATCAAAGGCTGAGATGTTGATGGCCACTAAGCT
GGTGGATTGCTTGACAGTGATTATTGTTTATAAGTTGCTCGTTGTCCTTC
TCTTCAGGTAGCCACTCCGCCCTTGAAATGCCACTATTGCCATGACTACG
AAGAAGAATGTCTTAAAACAAATGACGTCACCTCATGCCCAGGCTCCCAA
TATTCATGCCTGCTCCACTATGAAGAAACCAAAATTTTGAATGAGGATGG
CAGATATGATTTCAGTCGAACGGTGACACAAGATTGCGTGGTCGAAAATC
GAAATTATTGTGAGAATAGAATGAGATCGGACCCTGGGATTCTATCGTGT
AAAATGGGCCTAGTAAACCTTTTACTACATTTATCAATAATATTTTTGGT
TTTATCAGGCTTACTGGTGTTACAAAGACTTGTGTAATTTCCCTGCATCT
AAAGAAGAAAAGACACAGGAAGAAATTACCAGCAATATAAGTGACGAAGA
AAGTAAAAGTGAAAAGGAAAATTCTTCAAAAGGAATTATTGTTGATAAAA
ACAAGAAATTTGGACAGTTTACCAAATCAAAGGCTGAGATGTTGATGGCC
ACTAAGCTGGTGGATTGCTTGACAGTGATTATTGTTTATAAGTTGCTCGT
TGTCCTTCTCTTCAGGTAGCCACTCCGCCCTTGAAATGCCACTATTGCCA
TGACTACGAAGAAGAATGTCTTAAAACAAATGACGTCACCTCATGCCCAG
GCTCCCAATATTCATGCCTGCTCCACTATGAAGAAACCAAAATTTTGAAT
GAGGATGGCAGATATGATTTCAGTCGAACGGTGACACAAGATTGCGTGGT
CGAAAATCGAAATTATTGTGAGAATAGAATGAGATCGGACCCTGGGATTC
TATCGTGTAAAATGGGCCTAGTAAACCTTTTACTACATTTATCAATAATA
TTTTTGGTTTTATCAGGCTTACTGGTGTTACAAAGACTTGTGTAATTTCC
CTGCATCTAAAGAAGAAAAGACACAGGAAGAAATTACCAGCAATATAAGT
GACGAAGAAAGTAAAAGTGAAAAGGAAAATTCTTCAAAAGGAATTATTGT
TGATAAAAACAAGAAATTTGGACAGTTTACCAAATCAAAGGCTGAGATGT
TGATGGCCACTAAGCTGGTGGATTGCTTGACAGTGATTATTGTTTATAAG
TTGCTCGTTGTCCTTCTCTTCAGGTAGCCACTCCGCCCTTGAAATGCCAC
TATTGCCATGACTACGAAGAAGAATGTCTTAAAACAAATGACGTCACCTC
ATGCCCAGGCTCCCAATATTCATGCCTGCTCCACTATGAAGAAACCAAAA
TTTTGAATGAGGATGGCAGATATGATTTCAGTCGAACGGTGACACAAGAT
TGCGTGGTCGAAAATCGAAATTATTGTGAGAATAGAATGAGATCGGACCC
TGGGATTCTATCGTGTAAAATGGGCCTAGTAAACCTTTTACTACATTTAT
CAATAATATTTTTGGTTTTATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043540XLOC_043540Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069946-proteinTCONS_00069946-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069946-exon-scaffold_511-1575043694:60450..60618TCONS_00069946-exon-scaffold_511-1575043694:60450..60618Clytia hemisphaericaexon
TCONS_00069946-exon-scaffold_511-1575043694:59682..59923TCONS_00069946-exon-scaffold_511-1575043694:59682..59923Clytia hemisphaericaexon
TCONS_00069946-exon-scaffold_511-1575043694:58123..59407TCONS_00069946-exon-scaffold_511-1575043694:58123..59407Clytia hemisphaericaexon
TCONS_00069946-exon-scaffold_511-1510915933:60450..60618TCONS_00069946-exon-scaffold_511-1510915933:60450..60618Clytia hemisphaericaexon
TCONS_00069946-exon-scaffold_511-1510915933:59682..59923TCONS_00069946-exon-scaffold_511-1510915933:59682..59923Clytia hemisphaericaexon
TCONS_00069946-exon-scaffold_511-1510915933:58123..59407TCONS_00069946-exon-scaffold_511-1510915933:58123..59407Clytia hemisphaericaexon
TCONS_00069946-exon-scaffold_511-1491911889:60450..60618TCONS_00069946-exon-scaffold_511-1491911889:60450..60618Clytia hemisphaericaexon
TCONS_00069946-exon-scaffold_511-1491911889:59682..59923TCONS_00069946-exon-scaffold_511-1491911889:59682..59923Clytia hemisphaericaexon
TCONS_00069946-exon-scaffold_511-1491911889:58123..59407TCONS_00069946-exon-scaffold_511-1491911889:58123..59407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:58123..60618 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0906867	0.243125	0	0.427176	0	0.814504	1.723	0.488463	0.526192	0.301095	0.414519	1.04889	0.462507	0	0.0290775	1.18897	1.4623	1.34692	2.46654	2.81707	1.79264	1.33172	1.32076	2.72699	3.15742	1.30305	0.318434	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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