TCONS_00069942 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069942
Unique Name	TCONS_00069942
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2678

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_511:593631..597190+

transcript sequence

>TCONS_00069942 ID=TCONS_00069942|Name=TCONS_00069942|organism=Clytia hemisphaerica|type=transcript|length=2678bp
GTCCTTTCGAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCATGGT
AGTGGGATAAATTCTCTAAACATTGTCCAATGGCATGCTTCGTGATGAGG
TAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGATTTC
TTTAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTAAACATT
GTCCGATCTCATGCTTCGTGGAGAGGTAACGGTTGTGACGTTCACCGAGA
GTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCCTCATG
GTAGTGAGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGATGA
GGTAACTGTTGTGACGTTCACCAAGAGTGTCCTTTTGAACGCTTTCGGTT
TCTTTAAATATACGTAATGCGTCATGGTAGTGAGATAAATTCATTAAACA
GTTTCCAATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACCGA
GAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCA
TGGTAGTGAGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGGA
GAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGA
TTTCTTTAAATATACGTAATGCGTcttgattttgagataaattctCTAAA
CATTGTCCAATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACC
GAGAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGT
CATGGTAATGAGAAAGGTTATTTAAAGTGTTTGCATAATTATATTTAGTT
TTAAAATACAAGTCTTTTCTCTCATAACCATCTGTATGTGAAAGTTTTTc
catcatttttttcaagtaGTTGGAAAGTCTTCTCATATGTCCTTGTGTTT
CAAAAAGATGAATCAAATCATTCTGTACATCAATCAATTTCataagaaag
atattttcaacatctttttcaCAGATGAAAAGAAAATGCTGGTACCAGTA
TTTGCCatccatttttttttcttgacttCTGCAATTTCTCATGTCTTCAA
TAAAGGTATTTGCTAGCTCTTGATAGACTGGTTCTTTGACATTTGGAACG
TAAGTTTTGAGAAAGGTTTGAGTTAGTTCGTGACAATTTATTTGGTTTTC
TAGAAAGCATGTACCTGTGTTCGTGGTTTCAATGATTGAGTACTTGGCCA
ATAAAGATAATATCTTATTTAGAACAAATACATCATCAACAAATTTGATC
AGTAATCCTTTCCTGATGACTTTTCCATCCAAGTAGGAGATTTTGTTTAG
AAGATCATTAACTTTTTGACCACCTTCCTGTAATAATCTATTATAGGTCA
AAGACAAAGTAGTATAAACTGAAGGGTTTCCGATTTCTTGGGTTCCCTCT
GAAAGAAgttctttttgtcttttatcGAATATGGTTAGGTACATTTCAAC
AGTTAGTCCATTCTTATTAATAAATGAAAACGCCTGCTGTAGAGCAAGGG
GTAGATAGCTGAGAGATTTTAGAAGTTTTTGGTTTGCTTCTTTATCTTTG
CGTGCGTCTACATCGTGGATATTTCTCTCTAAGAACTGTTCAGCCTCTTT
GCTAGAAAATTGTTTTATCTTGATAACATCGAATCGTTGATCCCATTCAC
CGCATTGTGAGGTGATGAGAAAATATGGTGCTTCCTTTTTGGTGTCAGGA
ATCAAATCGACCAAAGCAGCCTGATTGATGACATTGTCTAGGACAAACAA
TACTTTACGGGGTTTATTCACATCCTGTCTTACTGAGAAGTAATCGTAAA
CAAGATTTGAGATCTCTTTCAATGGTTTGGCTGACCCATTTTGATTATAG
ATCTGATTAATGCCACATCGGTTGGCGATCTCGGTGAATGATTTTTCGAT
GTTGACCAAGCTGTTACAGTTAATCCAACAAACGATATCCTCGTAATAAA
CATTACGATAGGATTGCCAATACTCGCGAGCAGTTTCTGACTTTCCACTG
CCCCCAATCCCACTGATGACAACAGAGAATTTGAAGTCATCGTGGTGTTG
ACGGTAAACTGCTTGGTGAATATTGCTGATCAGGTTTGCTCTTCTGAAGT
GGTTGGCAACTGGCGGTAGACAGGCATAATTGAAAGAAGTCTTGGTCATC
AGTTTTTTCACTTTAGAACCAGCAATCCATATATTACATATGTCATCAAA
TTCAGCCTTGGATAGCCCTAGCTGTAATAAGGGTGGTTCTGCATCACTTA
GTATGGCATTGAATTCCGGTAGACTGACTTTGGTACCACCATGTTGGATC
CTATTCCTGATTTTTATCAAATCTTTCATATTTTCTCCGAAGAACTCTCT
AGTTACAAAAAAGAGGAGTGTACTGTCAAACTGGTCAAGGTAGACCATTC
CAGAAGTTGGAAGGAGTAATTTGTATTGCTCATCTTTGATGACATTTTTT
CTCCTCAGTTTATCGATTGTAGCTTTATGTGATAGAAAGAATTGAAATAC
TTTTGCTGGATCTCGTGTGTTCAGTTTTTTGTGTATTCTCTCTCGCAGCT
GGTTGTCTAATTTGCCAAGGAGAACCTGGCAACGAAACCCTCTTTCTTGG
TCCTCGTCAGTATGTGACTGTGTACTCA

Run BLAST on NCBI

transcript from alignment at scaffold_511:593631..597190+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069942 ID=TCONS_00069942|Name=TCONS_00069942|organism=Clytia hemisphaerica|type=transcript|length=3560bp|location=Sequence derived from alignment at scaffold_511:593631..597190+ (Clytia hemisphaerica)
GTCCTTTCGAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCATGGT
AGTGGGATAAATTCTCTAAACATTGTCCAATGGCATGCTTCGTGATGAGG
TAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGATTTC
TTTAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTAAACATT
GTCCGATCTCATGCTTCGTGGAGAGGTAACGGTTGTGACGTTCACCGAGA
GTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCCTCATG
GTAGTGAGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGATGA
GGTAACTGTTGTGACGTTCACCAAGAGTGTCCTTTTGAACGCTTTCGGTT
TCTTTAAATATACGTAATGCGTCATGGTAGTGAGATAAATTCATTAAACA
GTTTCCAATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACCGA
GAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCA
TGGTAGTGAGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGGA
GAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGA
TTTCTTTAAATATACGTAATGCGTcttgattttgagataaattctCTAAA
CATTGTCCAATGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACC
GAGAGTGTCCTTTCGAACGGTTTCGATTTCTTCAAATATACGTAATGCGT
CATGGTAATGAGATAAATTCTTTAAACATTGTCCGATCTCATGCTTCGTG
ATGAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTTAACGGTTTC
GATTTCTTTAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTA
AACATTGTCCAATGGCATGCTTCGTGGAGAGGTAATGGTTGTGACGTTCA
CCGAGAGTGTCCTTTCGAACGGTTTCGATTTCTTTAAATATACGTAATGC
TTCATGATAATGAGATAAATTCATGAAACAGTGTCCAATGGCATGCTTCG
TGGAGAGGTAACGGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTT
TCGATTTCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCTC
TAAACATTGTCCGATCTCATGCTTCGTGGAGAGGTAATGGTTGTGACGTT
CACCGAGAGTGTCCTTTTGAACGGTTTCGATTTCTTTAAATATACGTAAT
GCTTCATGATAATGAGATAAATTCTTTAAACAGTGTCCAATGGCATGCTT
CGTGATGAGGTAACTGTTGTGACGTTCGCCGAGAGTGTCCTTTTCAACGG
TTTCGATTTCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTC
TCTAAACATTGTCCAATGGCATGCTTCGTGGAGAGGTAATGGTTGTGACG
TTCACCGAGAGTGTCCTTTTGAACGGTTTCGATTTCTTTAAATATACGTA
ATGCTTCATGATAATGAGATAAATTCATTAAACAGTGTCCAATGGCATGC
TTCGTGATGAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTCAAC
GGTTTCGATTTCTTTAAATATACGTAATGCGTCATGGTAATGAGAAAGGT
TATTTAAAGTGTTTGCATAATTATATTTAGTTTTAAAATACAAGTCTTTT
CTCTCATAACCATCTGTATGTGAAAGTTTTTccatcatttttttcaagta
GTTGGAAAGTCTTCTCATATGTCCTTGTGTTTCAAAAAGATGAATCAAAT
CATTCTGTACATCAATCAATTTCataagaaagatattttcaacatctttt
tcaCAGATGAAAAGAAAATGCTGGTACCAGTATTTGCCatccattttttt
ttcttgacttCTGCAATTTCTCATGTCTTCAATAAAGGTATTTGCTAGCT
CTTGATAGACTGGTTCTTTGACATTTGGAACGTAAGTTTTGAGAAAGGTT
TGAGTTAGTTCGTGACAATTTATTTGGTTTTCTAGAAAGCATGTACCTGT
GTTCGTGGTTTCAATGATTGAGTACTTGGCCAATAAAGATAATATCTTAT
TTAGAACAAATACATCATCAACAAATTTGATCAGTAATCCTTTCCTGATG
ACTTTTCCATCCAAGTAGGAGATTTTGTTTAGAAGATCATTAACTTTTTG
ACCACCTTCCTGTAATAATCTATTATAGGTCAAAGACAAAGTAGTATAAA
CTGAAGGGTTTCCGATTTCTTGGGTTCCCTCTGAAAGAAgttctttttgt
cttttatcGAATATGGTTAGGTACATTTCAACAGTTAGTCCATTCTTATT
AATAAATGAAAACGCCTGCTGTAGAGCAAGGGGTAGATAGCTGAGAGATT
TTAGAAGTTTTTGGTTTGCTTCTTTATCTTTGCGTGCGTCTACATCGTGG
ATATTTCTCTCTAAGAACTGTTCAGCCTCTTTGCTAGAAAATTGTTTTAT
CTTGATAACATCGAATCGTTGATCCCATTCACCGCATTGTGAGGTGATGA
GAAAATATGGTGCTTCCTTTTTGGTGTCAGGAATCAAATCGACCAAAGCA
GCCTGATTGATGACATTGTCTAGGACAAACAATACTTTACGGGGTTTATT
CACATCCTGTCTTACTGAGAAGTAATCGTAAACAAGATTTGAGATCTCTT
TCAATGGTTTGGCTGACCCATTTTGATTATAGATCTGATTAATGCCACAT
CGGTTGGCGATCTCGGTGAATGATTTTTCGATGTTGACCAAGCTGTTACA
GTTAATCCAACAAACGATATCCTCGTAATAAACATTACGATAGGATTGCC
AATACTCGCGAGCAGTTTCTGACTTTCCACTGCCCCCAATCCCACTGATG
ACAACAGAGAATTTGAAGTCATCGTGGTGTTGACGGTAAACTGCTTGGTG
AATATTGCTGATCAGGTTTGCTCTTCTGAAGTGGTTGGCAACTGGCGGTA
GACAGGCATAATTGAAAGAAGTCTTGGTCATCAGTTTTTTCACTTTAGAA
CCAGCAATCCATATATTACATATGTCATCAAATTCAGCCTTGGATAGCCC
TAGCTGTAATAAGGGTGGTTCTGCATCACTTAGTATGGCATTGAATTCCG
GTAGACTGACTTTGGTACCACCATGTTGGATCCTATTCCTGATTTTTATC
AAATCTTTCATATTTTCTCCGAAGAACTCTCTAGTTACAAAAAAGAGGAG
TGTACTGTCAAACTGGTCAAGGTAGACCATTCCAGAAGTTGGAAGGAGTA
ATTTGTATTGCTCATCTTTGATGACATTTTTTCTCCTCAGTTTATCGATT
GTAGCTTTATGTGATAGAAAGAATTGAAATACTTTTGCTGGATCTCGTGT
GTTCAGTTTTTTGTGTATTCTCTCTCGCAGCTGGTTGTCTAATTTGCCAA
GGAGAACCTGGCAACGAAACCCTCTTTCTTGGTCCTCGTCAGTATGTGAC
TGTGTACTCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043539	XLOC_043539	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00069942-exon-scaffold_511-1491911889:593631..594331	TCONS_00069942-exon-scaffold_511-1491911889:593631..594331	Clytia hemisphaerica	exon
TCONS_00069942-exon-scaffold_511-1510915933:593631..594331	TCONS_00069942-exon-scaffold_511-1510915933:593631..594331	Clytia hemisphaerica	exon
TCONS_00069942-exon-scaffold_511-1575043694:593631..594331	TCONS_00069942-exon-scaffold_511-1575043694:593631..594331	Clytia hemisphaerica	exon
TCONS_00069942-exon-scaffold_511-1491911889:594584..594611	TCONS_00069942-exon-scaffold_511-1491911889:594584..594611	Clytia hemisphaerica	exon
TCONS_00069942-exon-scaffold_511-1510915933:594584..594611	TCONS_00069942-exon-scaffold_511-1510915933:594584..594611	Clytia hemisphaerica	exon
TCONS_00069942-exon-scaffold_511-1575043694:594584..594611	TCONS_00069942-exon-scaffold_511-1575043694:594584..594611	Clytia hemisphaerica	exon
TCONS_00069942-exon-scaffold_511-1491911889:595242..597190	TCONS_00069942-exon-scaffold_511-1491911889:595242..597190	Clytia hemisphaerica	exon
TCONS_00069942-exon-scaffold_511-1510915933:595242..597190	TCONS_00069942-exon-scaffold_511-1510915933:595242..597190	Clytia hemisphaerica	exon
TCONS_00069942-exon-scaffold_511-1575043694:595242..597190	TCONS_00069942-exon-scaffold_511-1575043694:595242..597190	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_511	supercontig	scaffold_511:593631..597190 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.41033	0	0	5.65551e-08	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00069942 vs. Swiss-Prot (Human)

BLAST of TCONS_00069942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00069942 (transcript) - C. hemisphaerica