TCONS_00069939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069939
Unique NameTCONS_00069939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069939 ID=TCONS_00069939|Name=TCONS_00069939|organism=Clytia hemisphaerica|type=transcript|length=2300bp
GTCCTTTCGAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCATGGT
AGTGGGATAAATTCTCTAAACATTGTCCAATGGCATGCTTCGTGATGAGG
TAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGATTTC
TTTAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTAAACATT
GTCCAATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCGCCGAGA
GTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCATG
ATAATGAGATAAATTCTCTAAACATTGTCCAATGGCATGCTTCGTGGAGA
GGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGATT
TCTTTAAATATACGTAATGCGTCATGGTAATGAGAAAGGTTATTTAAAGT
GTTTGCATAATTATATTTAGTTTTAAAATACAAGTCTTTTCTCTCATAAC
CATCTGTATGTGAAAGTTTTTccatcatttttttcaagtaGTTGGAAAGT
CTTCTCATATGTCCTTGTGTTTCAAAAAGATGAATCAAATCATTCTGTAC
ATCAATCAATTTCataagaaagatattttcaacatctttttcaCAGATGA
AAAGAAAATGCTGGTACCAGTATTTGCCatccatttttttttcttgactt
CTGCAATTTCTCATGTCTTCAATAAAGGTATTTGCTAGCTCTTGATAGAC
TGGTTCTTTGACATTTGGAACGTAAGTTTTGAGAAAGGTTTGAGTTAGTT
CGTGACAATTTATTTGGTTTTCTAGAAAGCATGTACCTGTGTTCGTGGTT
TCAATGATTGAGTACTTGGCCAATAAAGATAATATCTTATTTAGAACAAA
TACATCATCAACAAATTTGATCAGTAATCCTTTCCTGATGACTTTTCCAT
CCAAGTAGGAGATTTTGTTTAGAAGATCATTAACTTTTTGACCACCTTCC
TGTAATAATCTATTATAGGTCAAAGACAAAGTAGTATAAACTGAAGGGTT
TCCGATTTCTTGGGTTCCCTCTGAAAGAAgttctttttgtcttttatcGA
ATATGGTTAGGTACATTTCAACAGTTAGTCCATTCTTATTAATAAATGAA
AACGCCTGCTGTAGAGCAAGGGGTAGATAGCTGAGAGATTTTAGAAGTTT
TTGGTTTGCTTCTTTATCTTTGCGTGCGTCTACATCGTGGATATTTCTCT
CTAAGAACTGTTCAGCCTCTTTGCTAGAAAATTGTTTTATCTTGATAACA
TCGAATCGTTGATCCCATTCACCGCATTGTGAGGTGATGAGAAAATATGG
TGCTTCCTTTTTGGTGTCAGGAATCAAATCGACCAAAGCAGCCTGATTGA
TGACATTGTCTAGGACAAACAATACTTTACGGGGTTTATTCACATCCTGT
CTTACTGAGAAGTAATCGTAAACAAGATTTGAGATCTCTTTCAATGGTTT
GGCTGACCCATTTTGATTATAGATCTGATTAATGCCACATCGGTTGGCGA
TCTCGGTGAATGATTTTTCGATGTTGACCAAGCTGTTACAGTTAATCCAA
CAAACGATATCCTCGTAATAAACATTACGATAGGATTGCCAATACTCGCG
AGCAGTTTCTGACTTTCCACTGCCCCCAATCCCACTGATGACAACAGAGA
ATTTGAAGTCATCGTGGTGTTGACGGTAAACTGCTTGGTGAATATTGCTG
ATCAGGTTTGCTCTTCTGAAGTGGTTGGCAACTGGCGGTAGACAGGCATA
ATTGAAAGAAGTCTTGGTCATCAGTTTTTTCACTTTAGAACCAGCAATCC
ATATATTACATATGTCATCAAATTCAGCCTTGGATAGCCCTAGCTGTAAT
AAGGGTGGTTCTGCATCACTTAGTATGGCATTGAATTCCGGTAGACTGAC
TTTGGTACCACCATGTTGGATCCTATTCCTGATTTTTATCAAATCTTTCA
TATTTTCTCCGAAGAACTCTCTAGTTACAAAAAAGAGGAGTGTACTGTCA
AACTGGTCAAGGTAGACCATTCCAGAAGTTGGAAGGAGTAATTTGTATTG
CTCATCTTTGATGACATTTTTTCTCCTCAGTTTATCGATTGTAGCTTTAT
GTGATAGAAAGAATTGAAATACTTTTGCTGGATCTCGTGTGTTCAGTTTT
TTGTGTATTCTCTCTCGCAGCTGGTTGTCTAATTTGCCAAGGAGAACCTG
GCAACGAAACCCTCTTTCTTGGTCCTCGTCAGTATGTGACTGTGTACTCA
Run BLAST on NCBI

transcript from alignment at scaffold_511:593631..597190+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069939 ID=TCONS_00069939|Name=TCONS_00069939|organism=Clytia hemisphaerica|type=transcript|length=3560bp|location=Sequence derived from alignment at scaffold_511:593631..597190+ (Clytia hemisphaerica)
GTCCTTTCGAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCATGGT
AGTGGGATAAATTCTCTAAACATTGTCCAATGGCATGCTTCGTGATGAGG
TAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGATTTC
TTTAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTAAACATT
GTCCGATCTCATGCTTCGTGGAGAGGTAACGGTTGTGACGTTCACCGAGA
GTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCCTCATG
GTAGTGAGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGATGA
GGTAACTGTTGTGACGTTCACCAAGAGTGTCCTTTTGAACGCTTTCGGTT
TCTTTAAATATACGTAATGCGTCATGGTAGTGAGATAAATTCATTAAACA
GTTTCCAATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACCGA
GAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCA
TGGTAGTGAGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGGA
GAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGA
TTTCTTTAAATATACGTAATGCGTcttgattttgagataaattctCTAAA
CATTGTCCAATGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACC
GAGAGTGTCCTTTCGAACGGTTTCGATTTCTTCAAATATACGTAATGCGT
CATGGTAATGAGATAAATTCTTTAAACATTGTCCGATCTCATGCTTCGTG
ATGAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTTAACGGTTTC
GATTTCTTTAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTA
AACATTGTCCAATGGCATGCTTCGTGGAGAGGTAATGGTTGTGACGTTCA
CCGAGAGTGTCCTTTCGAACGGTTTCGATTTCTTTAAATATACGTAATGC
TTCATGATAATGAGATAAATTCATGAAACAGTGTCCAATGGCATGCTTCG
TGGAGAGGTAACGGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTT
TCGATTTCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCTC
TAAACATTGTCCGATCTCATGCTTCGTGGAGAGGTAATGGTTGTGACGTT
CACCGAGAGTGTCCTTTTGAACGGTTTCGATTTCTTTAAATATACGTAAT
GCTTCATGATAATGAGATAAATTCTTTAAACAGTGTCCAATGGCATGCTT
CGTGATGAGGTAACTGTTGTGACGTTCGCCGAGAGTGTCCTTTTCAACGG
TTTCGATTTCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTC
TCTAAACATTGTCCAATGGCATGCTTCGTGGAGAGGTAATGGTTGTGACG
TTCACCGAGAGTGTCCTTTTGAACGGTTTCGATTTCTTTAAATATACGTA
ATGCTTCATGATAATGAGATAAATTCATTAAACAGTGTCCAATGGCATGC
TTCGTGATGAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTCAAC
GGTTTCGATTTCTTTAAATATACGTAATGCGTCATGGTAATGAGAAAGGT
TATTTAAAGTGTTTGCATAATTATATTTAGTTTTAAAATACAAGTCTTTT
CTCTCATAACCATCTGTATGTGAAAGTTTTTccatcatttttttcaagta
GTTGGAAAGTCTTCTCATATGTCCTTGTGTTTCAAAAAGATGAATCAAAT
CATTCTGTACATCAATCAATTTCataagaaagatattttcaacatctttt
tcaCAGATGAAAAGAAAATGCTGGTACCAGTATTTGCCatccattttttt
ttcttgacttCTGCAATTTCTCATGTCTTCAATAAAGGTATTTGCTAGCT
CTTGATAGACTGGTTCTTTGACATTTGGAACGTAAGTTTTGAGAAAGGTT
TGAGTTAGTTCGTGACAATTTATTTGGTTTTCTAGAAAGCATGTACCTGT
GTTCGTGGTTTCAATGATTGAGTACTTGGCCAATAAAGATAATATCTTAT
TTAGAACAAATACATCATCAACAAATTTGATCAGTAATCCTTTCCTGATG
ACTTTTCCATCCAAGTAGGAGATTTTGTTTAGAAGATCATTAACTTTTTG
ACCACCTTCCTGTAATAATCTATTATAGGTCAAAGACAAAGTAGTATAAA
CTGAAGGGTTTCCGATTTCTTGGGTTCCCTCTGAAAGAAgttctttttgt
cttttatcGAATATGGTTAGGTACATTTCAACAGTTAGTCCATTCTTATT
AATAAATGAAAACGCCTGCTGTAGAGCAAGGGGTAGATAGCTGAGAGATT
TTAGAAGTTTTTGGTTTGCTTCTTTATCTTTGCGTGCGTCTACATCGTGG
ATATTTCTCTCTAAGAACTGTTCAGCCTCTTTGCTAGAAAATTGTTTTAT
CTTGATAACATCGAATCGTTGATCCCATTCACCGCATTGTGAGGTGATGA
GAAAATATGGTGCTTCCTTTTTGGTGTCAGGAATCAAATCGACCAAAGCA
GCCTGATTGATGACATTGTCTAGGACAAACAATACTTTACGGGGTTTATT
CACATCCTGTCTTACTGAGAAGTAATCGTAAACAAGATTTGAGATCTCTT
TCAATGGTTTGGCTGACCCATTTTGATTATAGATCTGATTAATGCCACAT
CGGTTGGCGATCTCGGTGAATGATTTTTCGATGTTGACCAAGCTGTTACA
GTTAATCCAACAAACGATATCCTCGTAATAAACATTACGATAGGATTGCC
AATACTCGCGAGCAGTTTCTGACTTTCCACTGCCCCCAATCCCACTGATG
ACAACAGAGAATTTGAAGTCATCGTGGTGTTGACGGTAAACTGCTTGGTG
AATATTGCTGATCAGGTTTGCTCTTCTGAAGTGGTTGGCAACTGGCGGTA
GACAGGCATAATTGAAAGAAGTCTTGGTCATCAGTTTTTTCACTTTAGAA
CCAGCAATCCATATATTACATATGTCATCAAATTCAGCCTTGGATAGCCC
TAGCTGTAATAAGGGTGGTTCTGCATCACTTAGTATGGCATTGAATTCCG
GTAGACTGACTTTGGTACCACCATGTTGGATCCTATTCCTGATTTTTATC
AAATCTTTCATATTTTCTCCGAAGAACTCTCTAGTTACAAAAAAGAGGAG
TGTACTGTCAAACTGGTCAAGGTAGACCATTCCAGAAGTTGGAAGGAGTA
ATTTGTATTGCTCATCTTTGATGACATTTTTTCTCCTCAGTTTATCGATT
GTAGCTTTATGTGATAGAAAGAATTGAAATACTTTTGCTGGATCTCGTGT
GTTCAGTTTTTTGTGTATTCTCTCTCGCAGCTGGTTGTCTAATTTGCCAA
GGAGAACCTGGCAACGAAACCCTCTTTCTTGGTCCTCGTCAGTATGTGAC
TGTGTACTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043539XLOC_043539Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069939-exon-scaffold_511-1491911889:593631..593827TCONS_00069939-exon-scaffold_511-1491911889:593631..593827Clytia hemisphaericaexon
TCONS_00069939-exon-scaffold_511-1510915933:593631..593827TCONS_00069939-exon-scaffold_511-1510915933:593631..593827Clytia hemisphaericaexon
TCONS_00069939-exon-scaffold_511-1575043694:593631..593827TCONS_00069939-exon-scaffold_511-1575043694:593631..593827Clytia hemisphaericaexon
TCONS_00069939-exon-scaffold_511-1491911889:594584..594611TCONS_00069939-exon-scaffold_511-1491911889:594584..594611Clytia hemisphaericaexon
TCONS_00069939-exon-scaffold_511-1510915933:594584..594611TCONS_00069939-exon-scaffold_511-1510915933:594584..594611Clytia hemisphaericaexon
TCONS_00069939-exon-scaffold_511-1575043694:594584..594611TCONS_00069939-exon-scaffold_511-1575043694:594584..594611Clytia hemisphaericaexon
TCONS_00069939-exon-scaffold_511-1491911889:594990..595115TCONS_00069939-exon-scaffold_511-1491911889:594990..595115Clytia hemisphaericaexon
TCONS_00069939-exon-scaffold_511-1510915933:594990..595115TCONS_00069939-exon-scaffold_511-1510915933:594990..595115Clytia hemisphaericaexon
TCONS_00069939-exon-scaffold_511-1575043694:594990..595115TCONS_00069939-exon-scaffold_511-1575043694:594990..595115Clytia hemisphaericaexon
TCONS_00069939-exon-scaffold_511-1491911889:595242..597190TCONS_00069939-exon-scaffold_511-1491911889:595242..597190Clytia hemisphaericaexon
TCONS_00069939-exon-scaffold_511-1510915933:595242..597190TCONS_00069939-exon-scaffold_511-1510915933:595242..597190Clytia hemisphaericaexon
TCONS_00069939-exon-scaffold_511-1575043694:595242..597190TCONS_00069939-exon-scaffold_511-1575043694:595242..597190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:593631..597190 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.000787297	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.18776	0.108966	0	0.0100608	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002182NB-ARC
IPR011990TPR-like_helical_dom
IPR011991WHTH_DNA-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0043531ADP binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0043531 ADP binding
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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