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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069933 ID=TCONS_00069933|Name=TCONS_00069933|organism=Clytia hemisphaerica|type=transcript|length=1126bp
AGACATCATACAACCCTGCATCAAGGTCTAAAGAAAGGCCCAGATAAGCC
AGACAAGTCTCCTCAACCAAAGCTTAAATCTTCCGCACCAAAGGTGCAGC
AGAACTCTCCAAAGATTGACGAGGCAAAATCTGAAGATCCTTCAATCCCA
CCAGCCAACTTACCTGATAGGAAGAAGATCGAAACCACCATAAATCATAA
ATAGACTTGTAAAGGGAAGAAGTCATGTCTATCTGCAGGTTGTCCCTGTT
CGGGTGAAGAATGTTCGGGGTATGTGGGTTGATACATACGCCATGCTAGA
TACTGGCAGTCAATGTACTCTTATTACCAAATCACTTTGCAAGGAACTAA
ATCTTCAAGGAAGAAAGACCAAAATCAACTTTGGTACAATCAAAGATAGT
ACTATTTTACCGACAAAGCTGGTTGATCTCACCATCGCAGCTGTTGACGG
CAGTTACCAGACTAAAGTTAAAAATGTGTACTCCCTCAATGATTCGGATT
TCAATGTACCAGGACAAGAAGTTCCAGTAACAACTGATTCTAGCTGGGAT
TACATCAGAGATCTCGGTCTTAAAGATATCGACATCAGCCAAGTACAACT
ACTGATTGGTGCTGATGTTCCAGATGTTCTCATCAGCAATGATTTCAGGA
AGTCAAAGAAAGGCTACCCATATGCTTCAAAGACTCGACTCGGTTGGACT
CTGCTTGGAGTGTATGATGGTACTTCAGACCCAATTGAAAGTCGACTTGT
TGCACTGACCAGAATTTTGGGGATCAGAAGTGAACTCTCTGAGGTTGAAT
ACAGCAGTTTCTGGGAGACTGAATCATTTGGTACTGAGGTCAAAGAAAGC
AAATCACGCTCTATCGACGATCAACGTAACCAAGAAATTCTTGACAAAGA
AACTGAATTCAAAGATGGTCACTACATCGTACCAATGCTTTGGAAGAAGG
ACGTCAACCTACCTGAAAGCAAAATCTTGGCTGAGAAACGCCTCAACCAA
ATTTGCAGGAAGTTCCAATCCAATCCTGACTTCTTTGAAATGTATGCTAA
GAATATATCATCCTACCTTGAGAAAGGATACATCAGAAAACTCTCAGACG
AAGAAGCATTATGCCGCACAGCCACT Run BLAST on NCBI protein sequence of TCONS_00069933-protein >TCONS_00069933-protein ID=TCONS_00069933-protein|Name=TCONS_00069933-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
MWVDTYAMLDTGSQCTLITKSLCKELNLQGRKTKINFGTIKDSTILPTKL
VDLTIAAVDGSYQTKVKNVYSLNDSDFNVPGQEVPVTTDSSWDYIRDLGL
KDIDISQVQLLIGADVPDVLISNDFRKSKKGYPYASKTRLGWTLLGVYDG
TSDPIESRLVALTRILGIRSELSEVEYSSFWETESFGTEVKESKSRSIDD
QRNQEILDKETEFKDGHYIVPMLWKKDVNLPESKILAEKRLNQICRKFQS
NPDFFEMYAKNISSYLEKGYIRKLSDEEALCRTAT Run BLAST on NCBI transcript from alignment at scaffold_511:542816..544063+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069933 ID=TCONS_00069933|Name=TCONS_00069933|organism=Clytia hemisphaerica|type=transcript|length=1248bp|location=Sequence derived from alignment at scaffold_511:542816..544063+ (Clytia hemisphaerica)
AGACATCATACAACCCTGCATCAAGGTCTAAAGAAAGGCCCAGATAAGCC
AGACAAGTCTCCTCAACCAAAGCTTAAATCTTCCGCACCAAAGGTGCAGC
AGAACTCTCCAAAGATTGACGAGGCAAAATCTGAAGATCCTTCAATCCCA
CCAGCCAACTTACCTGATAGGAAGAAGATCGAAACCACCATAAATCATAA
ATAGACTTGTAAAGGGAAGAAGTCATGTCTATCTGCAGGTTGTCCCTGTT
CGGGTGAAGAATGTTCGGGGTATGTGGGTTGATACATACGCCATGCTAGA
TACTGGCAGTCAATGTACTCTTATTACCAAATCACTTTGCAAGGAACTAA
ATCTTCAAGGAAGAAAGACCAAAATCAACTTTGGTACAATCAAAGATAGT
ACTATTTTACCGACAAAGCTGGTTGATCTCACCATCGCAGCTGTTGACGG
CAGTTACCAGACTAAAGTTAAAAATGTGTACTCCCTCAATGATTCGGATT
TCAATGTACCAGGACAAGAAGTTCCAGTAACAACTGATTCTAGCTGGGAT
TACATCAGAGATCTCGGTCTTAAAGATATCGACATCAGCCAAGTACAACT
ACTGATTGGTGCTGATGTTCCAGATGTTCTCATCAGCAATGATTTCAGGA
AGTCAAAGAAAGGCTACCCATATGCTTCAAAGACTCGACTCGGTTGGACT
CTGCTTGGAGTGTATGATGGTACTTCAGACCCAATTGAAAGTCGACTTGT
TGCACTGACCAGAATTTTGGGGATCAGAAGTGAACTCTCTGAGGTTGAAT
ACAGCAGTTTCTGGGAGACTGAATCATTTGGTACTGAGGTCAAAGAAAGC
AAATCACGTTCTATCGACGATCAACGTAACCAAGAAATTCTTGACAAAGA
AACTGAATTCAAAGATGGTCACTACATGGTACCAATGCTTCGNAATCATT
TGGTACTGAGGTCAAAGAAAGCAAATCACGCTCTATCGACGATCAACGTA
ACCAAGAAATTCTTGACAAAGAAACTGAATTCAAAGATGGTCACTACATC
GTACCAATGCTTTGGAAGAAGGACGTCAACCTACCTGAAAGCAAAATCTT
GGCTGAGAAACGCCTCAACCAAATTTGCAGGAAGTTCCAATCCAATCCTG
ACTTCTTTGAAATGTATGCTAAGAATATATCATCCTACCTTGAGAAAGGA
TACATCAGAAAACTCTCAGACGAAGAAGCATTATGCCGCACAGCCACT Coding sequence (CDS) from alignment at scaffold_511:542816..544063+ >TCONS_00069933 ID=TCONS_00069933|Name=TCONS_00069933|organism=Clytia hemisphaerica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_511:542816..544063+ (Clytia hemisphaerica)
ATGTGGGTTGATACATACGCCATGCTAGATACTGGCAGTCAATGTACTCT
TATTACCAAATCACTTTGCAAGGAACTAAATCTTCAAGGAAGAAAGACCA
AAATCAACTTTGGTACAATCAAAGATAGTACTATTTTACCGACAAAGCTG
GTTGATCTCACCATCGCAGCTGTTGACGGCAGTTACCAGACTAAAGTTAA
AAATGTGTACTCCCTCAATGATTCGGATTTCAATGTACCAGGACAAGAAG
TTCCAGTAACAACTGATTCTAGCTGGGATTACATCAGAGATCTCGGTCTT
AAAGATATCGACATCAGCCAAGTACAACTACTGATTGGTGCTGATGTTCC
AGATGTTCTCATCAGCAATGATTTCAGGAAGTCAAAGAAAGGCTACCCAT
ATGCTTCAAAGACTCGACTCGGTTGGACTCTGCTTGGAGTGTATGATGGT
ACTTCAGACCCAATTGAAAGTCGACTTGTTGCACTGACCAGAATTTTGGG
GATCAGAAGTGAACTCTCTGAGGTTGAATACAGCAGTTTCTGGGAGACTG
AATCATTTGGTACTGAGGTCAAAGAAAGCAAATCACGCTCTATCGACGAT
CAACGTAACCAAGAAATTCTTGACAAAGAAACTGAATTCAAAGATGGTCA
CTACATCGTACCAATGCTTTGGAAGAAGGACGTCAACCTACCTGAAAGCA
AAATCTTGGCTGAGAAACGCCTCAACCAAATTTGCAGGAAGTTCCAATCC
AATCCTGACTTCTTTGAAATGTATGCTAAGAATATATCATCCTACCTTGA
GAAAGGATACATCAGAAAACTCTCAGACGAAGAAGCATTATGCCGCACAG
CCACTATGTGGGTTGATACATACGCCATGCTAGATACTGGCAGTCAATGT
ACTCTTATTACCAAATCACTTTGCAAGGAACTAAATCTTCAAGGAAGAAA
GACCAAAATCAACTTTGGTACAATCAAAGATAGTACTATTTTACCGACAA
AGCTGGTTGATCTCACCATCGCAGCTGTTGACGGCAGTTACCAGACTAAA
GTTAAAAATGTGTACTCCCTCAATGATTCGGATTTCAATGTACCAGGACA
AGAAGTTCCAGTAACAACTGATTCTAGCTGGGATTACATCAGAGATCTCG
GTCTTAAAGATATCGACATCAGCCAAGTACAACTACTGATTGGTGCTGAT
GTTCCAGATGTTCTCATCAGCAATGATTTCAGGAAGTCAAAGAAAGGCTA
CCCATATGCTTCAAAGACTCGACTCGGTTGGACTCTGCTTGGAGTGTATG
ATGGTACTTCAGACCCAATTGAAAGTCGACTTGTTGCACTGACCAGAATT
TTGGGGATCAGAAGTGAACTCTCTGAGGTTGAATACAGCAGTTTCTGGGA
GACTGAATCATTTGGTACTGAGGTCAAAGAAAGCAAATCACGCTCTATCG
ACGATCAACGTAACCAAGAAATTCTTGACAAAGAAACTGAATTCAAAGAT
GGTCACTACATCGTACCAATGCTTTGGAAGAAGGACGTCAACCTACCTGA
AAGCAAAATCTTGGCTGAGAAACGCCTCAACCAAATTTGCAGGAAGTTCC
AATCCAATCCTGACTTCTTTGAAATGTATGCTAAGAATATATCATCCTAC
CTTGAGAAAGGATACATCAGAAAACTCTCAGACGAAGAAGCATTATGCCG
CACAGCCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069933-exon-scaffold_511-1491911889:542816..543653 | TCONS_00069933-exon-scaffold_511-1491911889:542816..543653 | Clytia hemisphaerica | exon |
| TCONS_00069933-exon-scaffold_511-1510915933:542816..543653 | TCONS_00069933-exon-scaffold_511-1510915933:542816..543653 | Clytia hemisphaerica | exon |
| TCONS_00069933-exon-scaffold_511-1575043694:542816..543653 | TCONS_00069933-exon-scaffold_511-1575043694:542816..543653 | Clytia hemisphaerica | exon |
| TCONS_00069933-exon-scaffold_511-1491911889:543776..544063 | TCONS_00069933-exon-scaffold_511-1491911889:543776..544063 | Clytia hemisphaerica | exon |
| TCONS_00069933-exon-scaffold_511-1510915933:543776..544063 | TCONS_00069933-exon-scaffold_511-1510915933:543776..544063 | Clytia hemisphaerica | exon |
| TCONS_00069933-exon-scaffold_511-1575043694:543776..544063 | TCONS_00069933-exon-scaffold_511-1575043694:543776..544063 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:542816..544063 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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