TCONS_00069927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069927
Unique NameTCONS_00069927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069927 ID=TCONS_00069927|Name=TCONS_00069927|organism=Clytia hemisphaerica|type=transcript|length=1546bp
NNGGAGCATGTGGCGGATATGGAGGCTACGGAAGTCAAGGTTACGGAATG
GGTGGAGGCTATGGTCAACAAGGTTATGGAATGGGTGGTTACGACCAACA
AGGTTACGGTATGGGCGGCTACGGCCAACACGGTTACGGAATGGGCGGCT
ACGGCCAACAAGGTTACGGAATGGGTGGTTACGGCCAACAAGGTTACGGA
ATGGGCGGCTACGGCCAACAAGGTTACGGAATGGGTGGTTACGGCCAACA
AGGTTACGGAATGGGCGGCTATGGTCAACAAGGCTACGGAATGGGAGGAT
ACGGTGGTTATGGTATGGATGGTGGCTACGGTATGGGAGGTTATGGTCAA
GGGTACGGTCATGCTGGATATGGAATGGGAGCAGGATATGGTGGAGCTTA
CGGTGGTTATGGTGTGGGTGGTGGCTATGGAGGCTACGGAAACATGGGTG
CACCAGCCCTAGGAGCACCAGCTCAATCAACTGGTCCAAAATATCCAGGA
CCTAACCCACCTGCATTGACGTTACCACAAAAAGCCAAAGCACGTCAATT
GATCATTACTGAAGATGATGAGGATGACACCAGCTCGCGAAGAAAAGACA
TCCCAAAAGACGGTCATCATTTACATCGTCTGTTAGTCTTGCCAGGAGAA
TGTGAAGGTGATCATTGTACTACCAACTTCCCAGTACACGGAGGACGTGG
TGGTGGTTGTCAAGGTGCTGGATGTGGTGGATACGGTCACCAAGGCTTCG
GTGGAAACTGGGATGCAGCTGATTGTGGTCATTCAGATTGTGGAGGTTTG
GGATTTGGTAACGGATACGGTGTTGGTTGTGGAGGCGGTGATTGTGGTGG
TTTCCATGATATTCATCATCGTCCAATCGGATGTCCCGAATACAACTCAC
CAGACTCGCCATGTTTAACTTACCCATACGGTAACAATGTTGGTTTCGGA
TTTCCAGGAAAATTCCACAGCCACCATCCAGTTTTGTTGCACCCAACACA
TCAAGAAACAGCCCATCATAACATCCATTTATCTGGTCGAAGCCATGGTG
GGCGTCACGGACGTCGCCATAGCGGAGATTTGATCGTATTACCACATTAC
GGGCATACTTGTTGTGGAGGTGCTGGATGGAATCCATACTGGGGACATTG
AACGTCTTAACGACGTGAAAAACTGTATCATAAAGAACACTaatttttta
gtatttgaatTTTATATAAACACCAcgcaaacaaaattgaaaacccCAGT
TGAATTTATATTCATTTCAATGcctttttttgaaatcaaattcaTCATAA
AAACGACTTCGTGCTTTAAAGAAATAAGCTGAAAAATCATGTTTTCGCTA
TGCGTTGCTTTGGAAAATGTGGCAAATCTATTTTATATAAACCTTAGCAT
CATTTCATGTAATTAGAAGCTAGATTTATGTAGCCCAACTTATATTGTAA
ACTCGTTCATCTTcgtttttgaaagaaagttttgaaaataaattgatacT
GATCTTAATCCAGGAAAAATATACTCTGCTGGGGGTACTCTCCCTG
Run BLAST on NCBI

transcript from alignment at scaffold_511:454274..456173+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069927 ID=TCONS_00069927|Name=TCONS_00069927|organism=Clytia hemisphaerica|type=transcript|length=1900bp|location=Sequence derived from alignment at scaffold_511:454274..456173+ (Clytia hemisphaerica)
NNGGAGCATGTGGCGGATATGGAGGCTACGGAAGTCAAGGTTACGGAATG
GGTGGAGGCTATGGTCAACAAGGTTATGGAATGGGTGGTTACGACCAACA
AGGTTACGGTATGGGCGGCTACGGCCAACACGGTTACGGAATGGGCGGCT
ACGGCCAACAAGGTTACGGAATGGGTGGTTACGGCCAACAAGGTTACGGA
ATGGGCGGCTACGGCCAACAAGGTTATGGTATGGGCGGCTATGGTCAACA
AGGTTACGGTTACGGAATGGGCGACTACGGCCAACACGGTTACGGAATGG
GCGGCTACGGCCAACAAGGTTACGGAATGGGTGGTTACGGCCAACAAGGT
TACGGAATGGGCGGCTACGGCCAACAAGGTTATGGTATGGGCGGCTATGG
TCAACAAGGTTACGGTTACGGAATGGGCGACTACGGCCAACACGGTTACG
GAATGGGCGGCTACGGCCAACAAGGTTACGGAATGGGTGGTTACGGCCAA
CAAGGTTACGGAATGGGCGGCTACGGCCAACAAGGTTACGGAATGGGCGG
CTATGGTCAACAAGGTTACGGAATGGGCGCTTACGGACATACTGGATATG
GAGGTATGGGTGGCTATGGAGGCTATGGTCAACAAGGCTACGGAATGGGA
GGATACGGTGGTTATGGTATGGATGGTGGCTACGGTATGGGAGGTTATGG
TCAAGGGTACGGTCATGCTGGATATGGAATGGGAGCAGGATATGGTGGAG
CTTACGGTGGTTATGGTGTGGGTGGTGGCTATGGAGGCTACGGAAACATG
GGTGCACCAGCCCTAGGAGCACCAGCTCAATCAACTGGTCCAAAATATCC
AGGACCTAACCCACCTGCATTGACGTTACCACAAAAAGCCAAAGCACGTC
AATTGATCATTACTGAAGATGATGAGGATGACACCAGCTCGCGAAGAAAA
GACATCCCAAAAGACGGTCATCATTTACATCGTCTGTTAGTCTTGCCAGG
AGAATGTGAAGGTGATCATTGTACTACCAACTTCCCAGTACACGGAGGAC
GTGGTGGTGGTTGTCAAGGTGCTGGATGTGGTGGATACGGTCACCAAGGC
TTCGGTGGAAACTGGGATGCAGCTGATTGTGGTCATTCAGATTGTGGAGG
TTTGGGATTTGGTAACGGATACGGTGTTGGTTGTGGAGGCGGTGATTGTG
GTGGTTTCCATGATATTCATCATCGTCCAATCGGATGTCCCGAATACAAC
TCACCAGACTCGCCATGTTTAACTTACCCATACGGTAACAATGTTGGTTT
CGGATTTCCAGGAAAATTCCACAGCCACCATCCAGTTTTGTTGCACCCAA
CACATCAAGAAACAGCCCATCATAACATCCATTTATCTGGTCGAAGCCAT
GGTGGGCGTCACGGACGTCGCCATAGCGGAGATTTGATCGTATTACCACA
TTACGGGCATACTTGTTGTGGAGGTGCTGGATGGAATCCATACTGGGGAC
ATTGAACGTCTTAACGACGTGAAAAACTGTATCATAAAGAACACTaattt
tttagtatttgaatTTTATATAAACACCAcgcaaacaaaattgaaaaccc
CAGTTGAATTTATATTCATTTCAATGcctttttttgaaatcaaattcaTC
ATAAAAACGACTTCGTGCTTTAAAGAAATAAGCTGAAAAATCATGTTTTC
GCTATGCGTTGCTTTGGAAAATGTGGCAAATCTATTTTATATAAACCTTA
GCATCATTTCATGTAATTAGAAGCTAGATTTATGTAGCCCAACTTATATT
GTAAACTCGTTCATCTTcgtttttgaaagaaagttttgaaaataaattga
tacTGATCTTAATCCAGGAAAAATATACTCTGCTGGGGGTACTCTCCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043537XLOC_043537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069927-exon-scaffold_511-1491911889:454274..454495TCONS_00069927-exon-scaffold_511-1491911889:454274..454495Clytia hemisphaericaexon
TCONS_00069927-exon-scaffold_511-1510915933:454274..454495TCONS_00069927-exon-scaffold_511-1510915933:454274..454495Clytia hemisphaericaexon
TCONS_00069927-exon-scaffold_511-1575043694:454274..454495TCONS_00069927-exon-scaffold_511-1575043694:454274..454495Clytia hemisphaericaexon
TCONS_00069927-exon-scaffold_511-1491911889:454592..454636TCONS_00069927-exon-scaffold_511-1491911889:454592..454636Clytia hemisphaericaexon
TCONS_00069927-exon-scaffold_511-1510915933:454592..454636TCONS_00069927-exon-scaffold_511-1510915933:454592..454636Clytia hemisphaericaexon
TCONS_00069927-exon-scaffold_511-1575043694:454592..454636TCONS_00069927-exon-scaffold_511-1575043694:454592..454636Clytia hemisphaericaexon
TCONS_00069927-exon-scaffold_511-1491911889:454895..456173TCONS_00069927-exon-scaffold_511-1491911889:454895..456173Clytia hemisphaericaexon
TCONS_00069927-exon-scaffold_511-1510915933:454895..456173TCONS_00069927-exon-scaffold_511-1510915933:454895..456173Clytia hemisphaericaexon
TCONS_00069927-exon-scaffold_511-1575043694:454895..456173TCONS_00069927-exon-scaffold_511-1575043694:454895..456173Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:454274..456173 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.153155	0	0	0	0	0.549877	0	0.170606	0	0.441005	1.56476	0.163164	0.397578	1.47297	1.04362	0.560044	0	0	0	0.283985	0	0	1.22181	1.24864	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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