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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069921 ID=TCONS_00069921|Name=TCONS_00069921|organism=Clytia hemisphaerica|type=transcript|length=2982bpRun BLAST on NCBI protein sequence of TCONS_00069921-protein >TCONS_00069921-protein ID=TCONS_00069921-protein|Name=TCONS_00069921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=553bp MAAAAGGPRFANGMQPQIILLKEGTDTSQGIPQLIGNINACEVVAEAIRTRun BLAST on NCBI transcript from alignment at scaffold_511:440208..452997+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069921 ID=TCONS_00069921|Name=TCONS_00069921|organism=Clytia hemisphaerica|type=transcript|length=12790bp|location=Sequence derived from alignment at scaffold_511:440208..452997+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_511:440208..452997+ >TCONS_00069921 ID=TCONS_00069921|Name=TCONS_00069921|organism=Clytia hemisphaerica|type=CDS|length=16620bp|location=Sequence derived from alignment at scaffold_511:440208..452997+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069921 vs. Swiss-Prot (Human)
Match: TCPH (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2) HSP 1 Score: 809.675 bits (2090), Expect = 0.000e+0 Identity = 399/524 (76.15%), Postives = 464/524 (88.55%), Query Frame = 2
Query: 314 MQPQIILLKEGTDTSQGIPQLIGNINACEVVAEAIRTTLGPRGMDKLIVDANGKSIISNDGATIVGLLNIVHPAARALTDIAKSQDAEVGDGTTSVILLAVEFLRQIKPLVEEGVHPQILIRGFRKATQLALAEISKIEERIKKDDPEEMKNLLQRCAETALNSKLVARHKEFFSKMVCEAVMYLDELLPLNMIGVKKVQGGALEESQLIQGVAFKKTFSYAGFEMQPKKYTTPKIXXXXXXXXXXXXXXXXXIRVDNVEEYQKIVDAEWNILYEKLDKIVKSGAKVVLSKLPIGDVATQYFADRDVFCAGRVVEEDLKRTMKACGGSIQTSIHSLTEDVLGTCEDFEEVQIGGERYNLFRGCPNAKTVTLILRGGAEQFIEETERSLHDAIMIVRRALKNDAVVAGGGAIEMELSKFLREFSRNIAGKEQLIISAFAKALEVIPRQLCDNAGFDSTAVLNKLRQKHATGGKWFGVDIMSEDIADNFEAFVWEPAIVRKNAITAASEAACLILSIDETVQNPKS 1885
M +ILLKEGTD+SQGIPQL+ NI+AC+V+AEA+RTTLGPRGMDKLIVD GK+ ISNDGATI+ LL++VHPAA+ L DIAKSQDAEVGDGTTSV LLA EFL+Q+KP VEEG+HPQI+IR FR ATQLA+ +I +I +KK D E + LL++CA TAL+SKL+++ K FF+KMV +AVM LD+LL L MIG+KKVQGGALE+SQL+ GVAFKKTFSYAGFEMQPKKY PKIALLNVELELKAEK+NAEIRV VE+YQ IVDAEWNILY+KL+KI SGAKVVLSKLPIGDVATQYFADRD+FCAGRV EEDLKRTM ACGGSIQTS+++L+ DVLG C+ FEE QIGGERYN F GCP AKT T ILRGGAEQF+EETERSLHDAIMIVRRA+KND+VVAGGGAIEMELSK+LR++SR I GK+QL+I A+AKALE+IPRQLCDNAGFD+T +LNKLR +HA GG W+GVDI +EDIADNFEAFVWEPA+VR NA+TAASEAACLI+S+DET++NP+S
Sbjct: 2 MPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRS 525 The following BLAST results are available for this feature:
BLAST of TCONS_00069921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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