TCONS_00069903 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069903
Unique NameTCONS_00069903
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1541

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069903 ID=TCONS_00069903|Name=TCONS_00069903|organism=Clytia hemisphaerica|type=transcript|length=1541bp
TACCGCTATATAGATAAGGTGCAATCAGCGACGGCTCATTTCCAAATCTA
CTATCACATTATGAGTATCATACCATCAACCATCATGAACCTTTTCTACG
GCGCTCTCTCCGACGAAGTTGGACGTCGCTGCATGATGACGGTAGTTCTC
ATCTGTTCTGTCATCGAATCGTCTATTCTTTTAGTCAACATCGTGTTTAA
GCTACCATTATGGACGATCTTTATTGGGAACGCATGTGCAGGTTTCGGAG
GTGGACTGAATGGAATGTTTATGTTGATCATTGCTTACACTGCCGACGTT
ACTGAGAAAATGGACAGGTCTGTCCGAATTGGTTACATAGAGGCTGCATT
ATTCCTTGGTATGACAATAAGTAATTACGCCAGTGGAGAATTGATTCACC
AATATGGTTTCACTATACCACAAGTTGTCACTGTTCTTTCGCATCTGTCC
GCCATCTTGTATGTCGCCTTTGTCCTCAAGaaatcacgtgatcaaaacaa
aCCGAGAAACGAGACGAACAAATTGCTTATCTTTTGGCAACAACCGATTA
ACATGTGGAACATTTTAGTTAAAGAACGTGCAAACAAGGACTTGTTATAT
CTagccatctttattttgatcAGTGGCCTAACTTTCACTGTTAGTGTTCA
TTCCGTGTTCACACTGTATTTGTTAAATCGTCCATTTTGTTGGCTGGCCA
GAGACGTTGGTTACATCATGGGAACCTATTTTCTTCTCCTTTCCTTGGGA
ACAGCTATTGGAATGAAGATTTTAACACCAACCATACCTGAATGGCTTTT
ATCTCTGCTCAGTTTCATGATGTCGGCTGGAAGCTTTCTTTATATCGCAT
TTGCAACCAATAAATTGGATTTATATGCAGCAATTGCGCTACGATTTTTC
GGTGGTTTACCGACAGCCATCTTTCGTGGAAATGTTTCGAAGAGTGTCCC
TCAAAACGAGCATGGAGCCATCTTTTCGGTCATCACATCCATAGAAATGC
TACTCATCATGTtgggaattttcattttcaatacaTCATACGCACATTTG
AATGATATTGGACATCCCGGATGGTTTTTCCTTATACCGGCCATAATGCT
TATTATACCGTTTACTTTATCTGTGGTTTATTGGAAGAAAACGTTCGATT
TACAAAggaaacatttttatgacgtcactaTTAGTGAAGAAGACgaggaa
gaagaaaaagaacaacttttgaaagaataaacTCTGTGGAGAAGTGTTGA
AAATGCTTTATCCTTATATGTTACTGTTTCTGTTAGAAATATCACCCCTT
CGCGGTGTCCTTAAATGAGCTTATATTTTGAAGGGCTGGCCCTTCATgcc
cctaaaattgaaattattagttggcttaaaaatagtttttattttattta
tggaaaattgttattttatcttttgtattttaaaattgtACATGAAAAAT
TCAGGGGGTAGTAAAAATCGTGGAGAAAATGTGCATCTTATAACAGCCAA
GAATATCACCTTCACCGGCAGTTGTTGAATCGGCATTCATG
Run BLAST on NCBI

transcript from alignment at scaffold_511:332093..337426+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069903 ID=TCONS_00069903|Name=TCONS_00069903|organism=Clytia hemisphaerica|type=transcript|length=5334bp|location=Sequence derived from alignment at scaffold_511:332093..337426+ (Clytia hemisphaerica)
TACCGCTATATAGATAAGGTatgatcactgacctttatataccctggacc
aagcttctcaatcccagccaagcaaaatcctTGATCGGAGTTTtgtgaaa
attggtaccctaatgtcggcactactcgatagcggtgtaattgcatcgag
agcgctaggtctacttttcctcaaattcttttgatgatgtagcggcgtta
gacgttaatttttaacattgcaatggcttctccttgggtaccaattctaa
aaaaactccaatcaaagatggcagatattgTTTGGTCCAGGGTTATATAA
AGGTCAGTGGGTATGATCTGTCTTCACACAATCAATTTGGCCTCACAGCA
AGGTATTCATCAATGGCCTTGTGTGACGAGGagtcaataaaaaatgaacA
TCACACTGATAAATGTTCTCGCTAGTAAAcaatcacaggaaaaaattttc
gttttcttagttggaaaaaagataaaatccaatggaaaatccaacctgaa
aatgtgggacattctccaaggttggaaattttgcattttccatggcttgg
aattttcgtaaatccaggttgaaaaaagcaaaattaacaaggttgcaatt
ttttaaaattcagttggaaaaaagccaaaatccaagcttaaacaaggttg
gaattctcgaaaatcgaggttgaaaaaaaacaaaatccaaatttaacaag
gttggaattttcaaaaatctaggttgaaaaaagccaaaatacaACGtggt
tggaaatttcgaaaatccaggTGGAAGAAAGCCGAaatacaaggttggaa
tttttgtaaattcagttggaaaaaagccaaaatccaagctaaacaaggtt
gaaaaaagccaaaatccaaaaagtcatggcagagatgtggaaaataGATC
TTAAAcaagatttttgtttttgtgaacagtcactcgctagcctaggctcg
atggctcccggtcaatatctcgttattgttcgcacagatacgtggttgat
cttagatcactcacacagctcagcagggtactatttgaaactatgacaca
agtaccctaagtgcttcactgtgcgaacgcactgcgattgaccgaggccg
ctccgaagagaagcctcacctgacggaaacttacagcttgactgctcaca
ttgtagcctaatatctaggttagctatacatcaaaacagttttgagcgaa
aaatcgctagtggttttcccaaggacatgcgcagaaaatggttggaaaaa
cgtaatttccacatgaatttttaacgttttccaaactgtttggaaaaaca
caaatttccaacccaaaaagtctagttttccaatcgaaagagtttcaatt
tcacaaaaatgtaatttccacatggatttttaacgttttccaaactgttt
ggagaaacacaaatttccaacccaaaaagtctagttttccaatcgaaaga
gtttcaatttcacaaaaatgtaatttccacatggatttttaacgttttcc
aaactgtttggagaaacacaaatttccaacccaaaaagtctagttttcca
agaaagggtttcaatcttagaaaaatgtaatttccacatggattttgaac
gttttccaaactgtttgggagaaacacaaatttccgacccaaaaagtcta
gtttttcaacttgaggtatcaaatttactaaaatatgtattttcacatcg
atttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCC
CCCCCCGGATAAAAACGCACGTATTAATCTTGACCCTCTCATGTACTAGA
ACAAGTTTACTCGAATTACTcacaattttctttaaaaatgaaaaatccca
aaatttaGGTGAAAAATTACCCAAATTTAATTGTTCGAGTTTAAGTAGCT
CGATTATAAAAATCTAAATTGTCTCTTCTACAGGTGCAATCAGCGACGGC
TCATTTCCAAATCTACTATCACATTATGAGTATCATACCATCAACCATCA
TGAACCTTTTCTACGGCGCTCTCTCCGACGAAGTTGGACGTCGCTGCATG
ATGACGGTAGTTCTCATCTGTTCTGTCATCGAATCGTCTATTCTTTTAGT
CAACATCGTGTTTAAGCTACCATTATGGACGATCTTTATTGGGAACGCAT
GTGCAGGTTTCGGAGGTGGACTGAATGGAATGTTTATGTTGATCATTGCT
TACACTGCCGACGTTACTGAGAAAATGGACAGGTCTGTCCGAATTGGTAA
GCTTGTTAATCTAGTCTGTCTTCACACACCTGTTATTAGCTTATAAATAT
ATACCGGTATGGTCTAGTCTGGCATGCTAGGTCACTAAATTATGAGTGAG
AGGAAGGTTAAGTAAAGGAGATCTTGAGGACACTCTTGTAGTTAATGTAA
ACCAATATTATCACATAACAGTTAtggtattatcatataacacctataTT
ACTGTATAAGACGTACTATAAATAACTCCACTCTATAAATCACCAAGCAT
TCGAGGCCCAGATTCTGTGCCAATGTATTACTTTCTTCTACTTTCTGAGC
AAATTCATTCTGTTATGAATGGTGGTATCGAAAATAGATTGACACCCTTC
ATTTTGAGGCCGGCGGCATTAAGTTAGATTCATGTATTTTAACCAACTGC
TAAAAAGGATTTGCAAATGGAATGAAATGTATTGTTATTTCAGGTTACAT
AGAGGCTGCATTATTCCTTGGTATGACAATAAGTAATTACGCCAGTGGAG
AATTGATTCACCAATATGGTTTCACTATACCACAAGTTGTCACTGTTCTT
TCGCATCTGTCCGCCATCTTGTATGTCGCCTTTGTCCTCAAGaaatcacg
tgatcaaaacaaaCCGAGAAACGAGACGAACAAATTGCTTATCTTTTGGC
AACAACCGATTAACATGTGGAACATTTTAGTTAAAGAACGTGCAAACAAG
GACTTGTTATATCTagccatctttattttgatcAGTGGCCTAACTTTCAC
TGTTAGTGTTCATTCCGTGTTCACACTGTATTTGTTAAATCGTCCATTTT
GTTGGCTGGCCAGAGACGTTGGTTACATCATGGGAACCTATTTTCTTCTC
CTTTCCTTGGGAACAGCTATTGGAATGAAGATTTTAACACCAACCATACC
TGAATGGCTTTTATCTCTGCTCAGTTTCATGATGTCGGCTGGAAGCTTTC
TTTATATCGCATTTGCAACCAATAAATTGGATTTATATGCAGGTGAGATA
TTGTTTTgctttgtttcttcttcttccaatTATACTCAGTTAATCTGTGG
TTACTGCCTTTCATATTAAGGTGTCTTATGTATTCAGTATATGGTTCCAT
ACCTTCCAATTAAAGGGTTCTTTCAATCTCAAATGTTGAAGCATCCTcca
ttttaaaaacctttactaTTCCGTCAGCGCAATAAGATAGCCTTCGTTTC
GCTAATTTGATTTCGATCTAGGAGTCTTGAAAGGAGGCTTCAAGTTCCCA
AGAAGAGCACTTGTCCGACCAGGATCAAATACTCTGTTAACAATTTTCCC
TTCCTTTTGACAGCAATTGCGCTACGATTTTTCGGTGGTTTACCGACAGC
CATCTTTCGTGGAAATGTTTCGAAGAGTGTCCCTCAAAACGAGCATGGTC
AGTATAATAAGATGAGCTCCATCCTGAAATTGCTTTTCCAACTATTTCCT
GGCTATTGTTTacaatgaaaataattaaacaataattggctttaaattct
ACAACATAATTTCTCCGCAGTGGGTTTAAACGGCGATAAGAATACCTAAT
CGCTGCATAATGAATTTATGGTAGATCTTTACTTAATATTAAAATTCTAT
ATTCTTTCCCGATTTTCCAGGAGCCATCTTTTCGGTCATCACATCCATAG
AAATGCTACTCATCATGTtgggaattttcattttcaatacaTCATACGCA
CATTTGAATGATATTGGACATCCCGGATGGTTTTTCCTTATACCGGCCAT
AATGCTTATTATACCGTTTACTTTATCTGTGTAAGTTActtgtgttttta
taaaaccAGCACCCTTTGGATGAGGCttagttgtttttattttttcctga
tttttagaCTTTCATATTCTTTTAAAATGCTCTTTATATGCTTAAGTACT
TTATAGGGCTTATAATCAAGATTGATGAAATCTGTTCTTAGGTCTGGGTT
AAAATTGAGCCTTAATCAATCCTCTTAATCAATCTAAAATCAGACGTGAA
CTTGATCTGTTTTGTAGGGTTTATTGGAAGAAAACGTTCGATTTACAAAg
gaaacatttttatgacgtcactaTTAGTGAAGAAGACgaggaagaagaaa
aagaacaacttttgaaagaataaacTCTGTGGAGAAGTGTTGAAAATGCT
TTATCCTTATATGTTACTGTTTCTGTTAGAAATATCACCCCTTCGCGGTG
TCCTTAAATGAGCTTATATTTTGAAGGGCTGGCCCTTCATgcccctaaaa
ttgaaattattagttggcttaaaaatagtttttattttatttatggaaaa
ttgttattttatcttttgtattttaaaattgtACATGAAAAATTCAGGGG
GTAGTAAAAATCGTGGAGAAAATGTGCATCTTATAACAGCCAAGAATATC
ACCTTCACCGGCAGTTGTTGAATCGGCATTCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043531XLOC_043531Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069903-exon-scaffold_511-1491911889:332093..332110TCONS_00069903-exon-scaffold_511-1491911889:332093..332110Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1510915933:332093..332110TCONS_00069903-exon-scaffold_511-1510915933:332093..332110Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1575043694:332093..332110TCONS_00069903-exon-scaffold_511-1575043694:332093..332110Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1491911889:334676..334988TCONS_00069903-exon-scaffold_511-1491911889:334676..334988Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1510915933:334676..334988TCONS_00069903-exon-scaffold_511-1510915933:334676..334988Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1575043694:334676..334988TCONS_00069903-exon-scaffold_511-1575043694:334676..334988Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1491911889:335436..335984TCONS_00069903-exon-scaffold_511-1491911889:335436..335984Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1510915933:335436..335984TCONS_00069903-exon-scaffold_511-1510915933:335436..335984Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1575043694:335436..335984TCONS_00069903-exon-scaffold_511-1575043694:335436..335984Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1491911889:336306..336389TCONS_00069903-exon-scaffold_511-1491911889:336306..336389Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1510915933:336306..336389TCONS_00069903-exon-scaffold_511-1510915933:336306..336389Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1575043694:336306..336389TCONS_00069903-exon-scaffold_511-1575043694:336306..336389Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1491911889:336613..336772TCONS_00069903-exon-scaffold_511-1491911889:336613..336772Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1510915933:336613..336772TCONS_00069903-exon-scaffold_511-1510915933:336613..336772Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1575043694:336613..336772TCONS_00069903-exon-scaffold_511-1575043694:336613..336772Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1491911889:337010..337426TCONS_00069903-exon-scaffold_511-1491911889:337010..337426Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1510915933:337010..337426TCONS_00069903-exon-scaffold_511-1510915933:337010..337426Clytia hemisphaericaexon
TCONS_00069903-exon-scaffold_511-1575043694:337010..337426TCONS_00069903-exon-scaffold_511-1575043694:337010..337426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:332093..337426 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.228239	0.0947091	0	0	0	0	0.662911	0.31507	1.16387	1.09957	0.656705	2.28322	1.37096	1.68629	0	0.208087	0.994169	2.38123	1.86578	1.35979	6.23478	6.41776	3.14492	2.43078	2.46026	3.48935	0.992616	0.62977	0	0
Blast
[Close]
BLAST of TCONS_00069903 vs. Swiss-Prot (Human)
Match: PCFT (Proton-coupled folate transporter OS=Homo sapiens GN=SLC46A1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.606e-17
Identity = 93/392 (23.72%), Postives = 178/392 (45.41%), Query Frame = 1 
Query:   10 IDKVQSATAHFQIYYHIMSIIPSTIMNLFYGALSDEVGRRCMMTVVLICSVIESSILLVNIVFKLPLWTXXXXXXXXXXXXXXXXXXXXXXAYTADVTEKMDRSVRIGYIEAALFLGMTISNYASGELIHQYGFTIPQVVTVLSHLSAILYVAFVLKKSRDQNKPRNETNKLLIFWQQP--INMWNILVKERANKDL-LY-LAIFILISGLTFTVSVHSVFTLYLLNRPFCWLARDVGYIMGTYFLLLSLGTAIGMKILTPTIPEWLLSL-LSFMMSAGSFLYIAFATNKLDLYAAIALRFFGGLPTAIFRGNVSKSVPQNEHGAIFSVITSIEMLLIMLGIFIFNTSY-AHLNDIGHPGWFFLIPAIMLIIPFTLSVVYWKKTFDLQRKHF 1167
            + +V++ T+H+ +Y ++   +     +   GA SD VGRR ++ +  +  ++++ + +  +  +L +    +G       G   G+     A  ADV+    R+ R+  +EA++ +   +++   G  +   G+  P  + +   ++  LY AF   ++  + K    + +L  F      + ++     E++ K L LY LAIF++I   T       + TLY L+ P CW ++ +GY      L           +       W+  + L+F +     +  AFAT    ++    L F   + T + R  +SK V + E GA+FS +  +  L ++    IFN+ Y A LN +   G+ FL+ A +L+IP  L  +  K    L+ + F
Sbjct:   75 MQEVETLTSHWTLYMNVGGFLVGLFSSTLLGAWSDSVGRRPLLVLASLGLLLQALVSVFVVQLQLHVGYFVLGRILCALLGDFGGLLAASFASVADVSSSRSRTFRMALLEASIGVAGMLASLLGGHWLRAQGYANPFWLALALLIAMTLYAAFCFGETLKEPK----STRLFTFRHHRSIVQLYVAPAPEKSRKHLALYSLAIFVVI---TVHFGAQDILTLYELSTPLCWDSKLIGYGSAAQHLPYLTSLLALKLLQYCLADAWVAEIGLAFNILG--MVVFAFATITPLMFTGYGLLFLSLVITPVIRAKLSKLVRETEQGALFSAVACVNSLAMLTASGIFNSLYPATLNFM--KGFPFLLGAGLLLIPAVLIGMLEKADPHLEFQQF 455
The following BLAST results are available for this feature:
BLAST of TCONS_00069903 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCFT3.606e-1723.72Proton-coupled folate transporter OS=Homo sapiens ... [more]
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