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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069887 ID=TCONS_00069887|Name=TCONS_00069887|organism=Clytia hemisphaerica|type=transcript|length=2130bp
GGAAATAATCAATTTTATGGAACAGTCAACAAAAACCTTCTtctaaaaaa
ggttaaaataaaTACGATGGAGAGTCTttcatgttttgaaatttgatgaT
TTCATCAAATCTTGAAACTTTATAAACAGATGCATGAGAAAACTTGCATT
TTAATAACAGTCTTTACAATTTAAAGTTTACAGAACTTTTGCCAACAGTA
AAAAGAGCTACACAACAAGCAAGAAGATTTAGCGTAATGTGGTGGCAGAT
ATTGTTAACTGCGTTTATCGTGGCTTTTACAGCCTTTTATTTCTATGTCA
GACATAGGATGACATTTTGGCAGCGTCGAGGTATTCCTGTTGATCCTGGA
ACCTTTCCATTTGGAAGTCAACATGTGTGGGATTTCTTCAAGCAGAAAAT
CGCTTTCATCCAAATGACGGACCATGCTTACAAGAATTACCCAGATGCCC
CTGTTGTTGGGACGTATGAATTATTTGGTCGTCCAAGCATCGTGATTCGA
GACTTGGATATTGCTAAGAAAGTTTTGGTGaaagattttgaccaatttaT
GGAAAGAAAGCCGGCATCTTCTAACGCTTATAATCCTCACACAAAGAACA
ACCGATATCTACCAGTAATGCTAACTGAACTGCGTGGCCAGCAATGGAAG
AGTGTTCGAGCTTCACTGACACCTGTTTTTACCAGTGGGAAACTAAAAGC
CATGGTTCCGCTCATACACAAAATTGCCGATCACTGCGATATCTTTCTAG
AGAAAAATGTTGGTAAAGAAATCGAAGCCAAAGAATTATTGCGAAACTAT
GCATTAGATGTGATTGTAAGCACAGGTTTTGGTTATGAGAGCGATAGCGT
CAATGAGACTAACAGCATCTTCAAGACGAACGCAGACTTGATGGTTGGCA
AAACAATGAGTATCAAGATATTTTTGACTTTcctaatgtttttgtttttc
ccaAGTTTATTGAGGAAACTGGATTGGCCGCTTCTTGACAAGAAAGGAGA
GGGTTTTTTTGTTGCAGCTGTTAGGAAGGCGATCAAAGAACGCCAGGAGA
GTGGGGAGAGACGCAATGACTTTATTGATACTTGTCTCGATATCCTTCag
aaggaaaatgaagaaatcaaGACAAATGAAAAGTCAGAAGAAACGAAACG
ACAAAAAGACGAAATCGAGAGAATTGTCATCGCGAACTCCCTGATCATGT
TAATCGCTGGTGTTGATACTGTTTCAAGTACTTCCTCCATGATGATGTAT
TTCTTGGCTAAAAACCAGGATTGCCAAGAGAAACTTTACCAAGAGATCAA
AGAAAGTATCGAGTCAACATGCTCTGATCAATTCGATTACGCTGCTATCA
TGAATATGCCGTATATGGAGAAATTCTTCCAAGAGAGTCTTAGAATGTAT
CCTGTGACCCACTTGGAACGTGGTTCAGTTAACGATTACAAAATTCCAGG
CACTGAAATGGTCATCCCGAAAGATATCGTTGTCCGTTTTCCCGTCACTG
GtattgtaaaagatgagaaatattTCTCCAACCCGAATGTTTTTGACCCT
GAGAATTTCAGTGCCGAAAAGAAAGCTGACAGACACCCGTTCGCGTCCGG
TGGATTCGGACACGGTCCGAGAAATTGTATTGCGCAACGTTTTGCCACCA
TGGAAGTGAAAATTGTGGTGGCCCGCATGTTGAGTAAATATAAAGTCATC
CCGTGTTCGAAAACTGTGGATGAATTGATTCCAGACCCCAAATCGCGCTC
CCAATTTCCCAAAGGCGATGTTTGGTTTAGTGTCGAAAAACGTTGAGGTG
TTTTCAATCCAATCTTAGGTTACATCAAGGTTacataaattttgataata
CAAAAAAAGACTAAACCGTAGTTTTTTACAAGGCATACTGTgacaatatt
ttaaaattcaattacACTTTCGCCAGCAGATGTCAGAAGACAAGCATAAT
ATCAGCATATGACTTTAACAAATTATCTTGTTCTCAgggtttcttaaaaa
aaaaggatGGCTGTTTTGTTATTAACGTTAGATTTCATTCAAATTACATA
AGCNcaaacaaatcaaaaactcaCAAACTTGTTGGGTTACCAGAGAGGAA
ACTTTTGATTAATGTTTTTAGAATGTGCTT Run BLAST on NCBI protein sequence of TCONS_00069887-protein >TCONS_00069887-protein ID=TCONS_00069887-protein|Name=TCONS_00069887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp
MWWQILLTAFIVAFTAFYFYVRHRMTFWQRRGIPVDPGTFPFGSQHVWDF
FKQKIAFIQMTDHAYKNYPDAPVVGTYELFGRPSIVIRDLDIAKKVLVKD
FDQFMERKPASSNAYNPHTKNNRYLPVMLTELRGQQWKSVRASLTPVFTS
GKLKAMVPLIHKIADHCDIFLEKNVGKEIEAKELLRNYALDVIVSTGFGY
ESDSVNETNSIFKTNADLMVGKTMSIKIFLTFLMFLFFPSLLRKLDWPLL
DKKGEGFFVAAVRKAIKERQESGERRNDFIDTCLDILQKENEEIKTNEKS
EETKRQKDEIERIVIANSLIMLIAGVDTVSSTSSMMMYFLAKNQDCQEKL
YQEIKESIESTCSDQFDYAAIMNMPYMEKFFQESLRMYPVTHLERGSVND
YKIPGTEMVIPKDIVVRFPVTGIVKDEKYFSNPNVFDPENFSAEKKADRH
PFASGGFGHGPRNCIAQRFATMEVKIVVARMLSKYKVIPCSKTVDELIPD
PKSRSQFPKGDVWFSVEKR Run BLAST on NCBI transcript from alignment at scaffold_511:209771..219404+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069887 ID=TCONS_00069887|Name=TCONS_00069887|organism=Clytia hemisphaerica|type=transcript|length=9634bp|location=Sequence derived from alignment at scaffold_511:209771..219404+ (Clytia hemisphaerica)
GGAAATAATCAATTTTATGGAACAGTCAACAAAAACCTTCTtctaaaaaa
ggttaaaataaaTACGATGGAGAGTCTttcatgttttgaaatttgatgaT
TTCATCAAATCTTGAAACTTTATAAACAGATGCATGAGAAAACTTGCATT
TTAATAACAGTCTTTACAATTTAAAGTTTACAGAACTTTTGCCAACAGTA
AAAAGAGCTACACAACAAGCAAGAAGATTTAGCGTAATGTGGTGGCAGAT
ATTGTTAACTGCGTTTATCGTGGCTTTTACAGCCTTTTATTTCTATGTCA
GACATAGGATGACATTTTGGCAGCGTCGAGGTGTTCCTGTCGATCCTGGA
ACCTTTCCATTTGGAAGTCAACATTTGTGGGATTTCTTCAAGCAGAAAAT
CGCTTTCATCCAAATGACGGATCATGCTTACAAGAATTACCCAGATGCCC
CTGTTGTTGGGACGTATGAATTATTTGGTCGTCCAAGCATCGTGATTCGA
GACTTGGATATTGCTAAGAAAGTTTTGGTGAAAGATTTCGACCAATTCAT
GGAAAGAAAGCCGGCCTCTTCTAACGCTTACAATCCTCACACAAAGAACA
ACCGATATTTACCAGTAATGCTAACTGAACTGCGTGGCCAGCAATGGAAG
AGTGTTCGAGCTTCACTGACACCTGTTTTTACCAGTGGGAAACTAAAAGC
CATGGTTCCGCTCATACACGAAATTGCCGATCACTGCGATgtctttttgg
agaaaaatgtGGGGAAAGAAATTGAAGCCAAAGAATTATTGAGAAACTAT
GCATTAGATGTGATTGTAAGCACAGGTTTTGGTTATGAGAGCGATAGCGT
CAATGACACTGACAGCATCTTCAAGACGAACGCAGACTTGATGGTTGGCA
AAACAATGAgtatcaaattatttttgactttcctaatgtttttgtttttc
ccaAGTTTATTGAGGAAACTGGATTGGCCGCTTCTTGACAAGAAAGGAGA
GGGTTTTTTTGTTGCAGCTGTTAGGAAGGCGATCAAAGAACGCCAGGAGA
GTGGGGAGAGACGCAATGACTTTATTGATACTTGTCTCGATATCCTTCag
aaggaaaatgaagaaatcaaGACAAATGAAAAGTCAGAAGAAACGAAACG
ACAAAAAGACGAAATCGAGAGAATCGTCATCGCGAATTCCCTGATCATGT
TAATCGCTGGTTTTGATACTGTTTCAAGTACTTCCTCCATGATGATGTAT
TTCTTGGCTAAAAACCAGGATTGCCAAGAGAAACTTTACCAAGAGATCAA
AGAAAGTATCGAGTCGACAGGCTCTGATCAATTCAACTACGCTGCTATCA
TGAATATGCCGTATATGGAGAAATTCTTCCAAGAGAGTCTTAGAATGTAT
CCTTTGACCCACTTGGAACGTGCTTCGGTTAACGATTACAAAATTCCAGG
AACTGAAATGGTCATCCCGAAAGATATCGTTGTCCGTTTTCCCGTCACTG
GtattgtaaaagatgagaaatattTCTCCAACCCGAAGGTTTttgaccct
gaaaatttcagcgCCGAAAAGAAAGCCGGCAGACACCCGTTCGCGTCCGG
TGGTTTCGGACACGGTCCGAGAAATTGTATTGCGCAACGCTTTGCCACCA
TGGAAGTGAAAATTGTGGTGGCCCGCATGTTGAGTAAATATAAAATCATC
CCGTGTTCGAAAACTGTGGATGAATTGATTCCAGACCCCAAATCGCGCTC
CCAACTGCCCAAAGGCGATGTTTGGTTTAGTGTCGAAAAACGTTGAGGTG
TTTTCAATCCAATCTTAAGTTACATCAAGTTTacataaattttgataata
CAAAAAAAAGACTAAACCGTAGCTTTTACAAGGCACAGTAtgacaatatt
ttaaaaatcaattacaCTTTCGCTAGCAGATGTCAGAAGAACATAATATC
AGCATATGACTTAAACAAATTATTATCTTCTTCTCAGGGTTTCTTCTTGT
TTTGTTATTAACGCTAGGTTTCATTTATATTATATAAGCTCGAATATCTT
GTTTGAATTTTGCAAATTAGTTTTATAGCATTTTTAAAGGCTTGTATATT
AAATCTAAATTCAtaaatttactttaattttttttacctttaaTTAATTC
TATTAATCGAATCCATTCAAATAGACCTTGAATTTAAAATCACGAACTTG
TTGGGTTACCAGAGAGGGAACTTTGGAATAATGTTTTTAGAATGTGCTTA
AGTGCatttaattcatttttattcTAATCAATGGGTTATTTTTAAGTACC
TTTTAACCCCTTCCATGCTAAACTCGTATATATTCGTCAATGGATTTAAA
GGAGGGGAAGCTCTCCCGTAGCCAacgttttcattttgaaatcatttgaA
CTCGTATTTAAACTCGTACAAAGAATATAAAAATGGCCttgttttcttta
aagaaaagcTTTTCTAAGACTTTAGCCCTCTACCGAATCAGATTGAAGTT
TTGTCGTCTGCACCCTTTCTTTATTCCGTCAATTCAGTCAGATCAGCGCA
GTCGCTTTAATACCCCTGACCTTTTGctcatatatatttttttctgggAA
CTTGGGCCAAAAGATTGATTTTCGTTATTCTGATATTCGTAACTCTGTTT
GATATCTATTCGTGGCTTTCCAGGTGGAGGGGTATACCGAGAAGAATCTA
TCTAGGCTATCTAATCTATTTTTTTAATTCCCCTCCCCTTTCAATCTTTC
AAGGTTATAcgtactttgaaaatttttcctttctttcaaTGTATATCCGG
ACATAAAGTTCTATCTTTTCGAAGCAGTTTCTTCATCTCGAACTAGCACA
CCGTTAGGATGTACAGATGATGAAAGAAGACGTGGGTCGCTTAAAATGCA
AGAAATGAAATATAATCGTCAGATCCTATAACGATGAATACCTATTTTTA
CATTCCGTACAAATAACggagaataataaaaaaaaagcgaaGCGCTGCca
ttttttatctgtaaatACAAATCCGTCCAGTTGAGAGAAAATTACAACAT
TTTCGTATTGCCAGTTACAGGGCTTCGGCaggaaaaacttttcaaaaatg
ggAAGAAAAGACGAGAAACATTGTAAAAAGAATGAAACGTAATGCAGAAA
TGATTGTTCACGGGTTTTTTTGGCAtcttctcgagattttatcattagtt
ttttctgattttctgcgtattaacaatgcccaaaacatggccgagttcga
tttttgatggattttcattggattttttccttataattggttgttttttc
attcaaaaacattattaatagcccaccatcaagcataattcaattttcaa
taacgaataataattttcgaaaaacgaTTGGATTTTAAATCACTGTTCAA
GACTCAATCGTCATCATGGTACGAAACCAGCTTGAGAATCCCTCAAAGCT
CTTAATCACGGACTCTCAAAACCAAAACATTCAGTTTCTCgacaaatgaa
aaaaccaaATGGTACCTTATGTTCCACTCCTCAAGAAAATGCAACTGTCT
TTTACGAACATTTCAACAATCTCTACAATAGAGAAGAAAACTTTAATGTA
TCCGTTCTCGACCCCATCCCTCATCACGACATCGTTCAAGGATGCGACCA
TGATCCAACTGAGGATGAAATCAGAAAAGCTATACAAAAATTAAAGAACA
CTTCTCCACGAGACTCTGGTATACAACCACAAATATGGAAATGTTTGATT
GATCATCTAGGAACCAGTCAAGCTCTTACCAACATCATACTTTCAATTTG
GCAAACTGAAAATATACCTAATGACTGGAATGTAGGACGTTTGACGATTC
TACCAAAGAAAGGCGATCTTGGTTTACCAAAGAATTATCGTGGGATCATG
TTACTTGAGACTGCTTACAAGATAATTGCAATCATTTTACATTTTCGCCT
ATTACCAATCGAAGAAAATCTTGACCACGAACCGCAATGTGGGTTTAGAC
CTGATCGAGGCTGCATTGATGCCATTTTTACAGTTAAAACAGCCCTTCAC
AAACGACGAGAACACGGAAAAGAATCCTGGGTATTTTTTCTTGACCTAGT
CAAGGCTTTCGATCGCACCCAGGCAGTTACCATGGCTTATCTTAGAGAAA
TTTGGAGTTCCACCTAAATTAACCAGTCTTCTTAAATCCTTACATGAAAA
CTTCACCTTTAAATTCACCGTAGACGAAGTCACGCATATAATGTCATGTA
CCATTGGCGTGAAGCAAGGGGATATTCTCGGCCCCATACTGTTTACGTTT
TTTCTTGCAGCTGTAATGATCACCTGGAGAGCAACCATCAGCTTACCATT
GTGCATTTTTAGATCAAAACAGCATcgttttgcagaaagatgcgtattcg
caacgctcaaaacatggcccagttcgatttttgagaatttttttttccgg
ttgaaaatgccggaaatcgccgtgtttacagattttcattggattttttc
cttatatttctatgttttttacatagtcgaacgtgcgcaacgcactgggc
tcaacttcagtgccttcaaactattcataggcccaattgtagagccccag
atattcacccaaggaacaagtgggcaaaatttcagccaaatcgaacaatt
tttgaagtctacaggctgccccaaagttttagcctcgttttggcgaaaaa
cttgtccccaggccccaaaaatcaaaattttcaaaaattgaaaaaaattc
tacaaaaattcagccaaggaacaagtgtgcaaaatttcagccaaatcgaa
caatttttgaagtctacaggctgccccaaagttttagcctcgttttggcg
aaaaacttgtccccaggccccaaaaatcaaaattttcaaaaaatgaaaaa
aataccccagatattcacctaaggaacaagtgtgccaaatttagTGACTT
AGGATCATCGATGAGCATCTTGAAAACAGCAACTTTAGCAAAGCCACATG
CCAAAGGATCAAGCAGGGAAGATTCCATCGTTctgataaaagtaaaaata
catAATACAACAATAAGATGCCACTTCCCACACTGAGATTCTGATtattt
ttctggaatctttctaCTAGTTTTCTGGGAAAAAATTGTGTTTACTTAGG
GGCACCATCCAAACTCAAACAGCTCCTTCCATCCCTTCCATAACGTTGCA
TGGCAATTAAACTTAATTTCAAGATAATTAACTCTACGCTTCATTGTTTC
ATCAGTCATCTTAATTTTTCCTATGGCTCATATTGTGTATCGTTGTGGTT
CTAAATTCAACCTTCCCCTAACCCCCTTCGATTAACGTTATCGTGGCATT
AAAACTTTAATTACGTTTATTCAACCCTCTGTCAGCTTTGTTGCTGTAAA
TATTCAAACACTGTTTTCTCCGCCATCTTTATTTTCCGTagttcattttt
aaaaaaagaagctTATTTCTGAACTTTTTCACAGAAATCTCTCTGTAATA
TATATCACTGCAAAACAAACCGGCCGTCTGCAAAAACTCAAGAGTCGTGC
AGCCCGTCAAGATAAGAGAACCAGAGACTTAAACATTggtcgtttgtttt
ggttttcaaaaaagcTGAAGCGAACAAAAAGCAGAAATGACAAAGTAACA
TTTGGAACGGAAAGAACTTCTCTATAATTATTATTTCTAGTGAAAATTTC
TTGGAAACGAGTAAACCTCCATCATAACTGCCATCACCCCCACCCCTCTG
AGCGCCCAATATCAACGTTTTTGTTTGTGGAAAATATGAGTTTGGATGGA
TCCCCTTAGTGATTACAGTGAGATCGgctaacttgcatcagtggaggcta
acatgcatagccctcatcTGAATGACctgtcatttgatggctatgcatgt
ttccctccactgatgcaatgCAAGTTACCCGAGGCGAGGCCGACTTCACG
GTTTTAGTCAAgctctgaaaattaaaaaaaaaaagggtaTCCCAAAATGA
TTATTGGTCAACCTAGTCAGTCGAGTTCCAAGGCTTAAACCATTACTTGG
TTATGCTTTGGTTGACCCTGGTCTAGTATCATTTTGGGTTGGGATTAGGA
TGCATTTTTTTGTGTTTATATTATAGTTCAACATCATTTCTCATTTAATT
TGCAAGAATCCTAAGCACATATTACCTAGTTAATCAAATCTCTTATACAT
CAAAAAGGGCAAACAGCTGAAATAACTGCAGTCAAAAGATAACAGGTGAG
TTTATTTaggcaaacaaaacaaaagtacAGTAGCGAGTAGGGATACCCCA
GAGCCAGAAAAGAATATAAAGTAAATCGATTTTTACTTACCACGTCAATA
GAAGACTTCAAACCCAATATGATTATAGAATATATTTTGATGTATCCATG
TACACAAGTTGTAAAAGGTAAAAAcaatgtaaaaaattatagAAGTTTNT
GTATCCATGTACACAATTTGTAGAAGGTAAAAAcaatgtaaaaaattata
gAAGTTAGTTGATCTGCAAGCCTGTAAAGAGACACTCTTTCTACAGCTCT
GAAAAATCTTGACTGTACTACCGCCGcttcaaaaaaatactttttggaat
gGCGGGAAAACGAATACCGTGATCTGATTGGTCCACGGGATTTTACCGAA
CCGAATTTCGGGTGCGTAAATCTATTTGTCCTTTTGGAAATCTGTTTAAA
ATATACAGGGGGTAACACTTtgtaaaaaatcacaaaaactaCGAGGCCTA
GAAATTTTTGGTTTGTGTTTTTGAAAAGAGGGATAAATTTTGGTTAAGAA
AGTCACCCTGCACTAAATTCATTGTCCTTTGGCTTTATTAACTATgtatt
caaattaaaaaaaaacacagataaataaaaaattctgtcagaaaattttg
atttttaaccccccgTCTTAAATTGAGAATTTGTGCTGAGTGGGAATCCG
ATAGAGGGACTATCCGGCAATACTCTCCGCCCGGAGTGATTAATTCTCGT
TGCGTTTTCTGCATGCAAGCGGAAAAACTGCTTTAAGGAAACACAAAGCA
CAAAAAAtgttactttttaaaaaattgaacaaaataagaacttaTTTGTC
TCAAATTAAGGTTTATGATCGGTATTTCATATCAAAAAAGGGATCCAGAG
ATTGCTAGAAGGTATGTAATACTCCATTAACGACGAACAAGGACAGATAC
TGATTTTCCGTGAAAACGCAACGCAACTTAACAGACCATCCTTTTTGCCG
TTGAGCATGCTTCCCCTAATAAAAAAAGGGAGATGGGTTAAGGTATGTTA
AGAAATGATAATATCGAGTTTCAAAACAGTTAATTAAAGCTCTGGATTGT
ATCATTGTTTAATGACAGTTTTTCAAGGAAGCTTTTATCAGCTCTCTCTC
TGTTTCATTAAAAGTGCTTCCTTCATCAACAGTAAAGCATGTATTATGTC
ACTCATCTTGATATTTTTATCATTAACGATTTTCTGCGGTTTTTGCTAAC
AAGCTCTCTGAAGGAAATCATCAATTTTATGGAACAGTCAACAAAAACCT
TCTTCTAAAAAAGGAGAGTGTttcatgttttgaaatttgatgaTTTCATC
AAACCTTGAAACTTTTATATAAACAGGATGCACGAGAAAACTTGCATTTC
AATAACAGTTTTTACAatctaaattttaagtttacAGAGCTTTCGCCAAC
AGTAAAAAGAGCTACAGAACAAGCAAGAAGATTTAGCGTAATGTGGTGGC
AGATATTGTTAGCTGCGTTTATCGTGGCTTTTACAGCCTTTTATTTCTTT
GTCAGACATAGAATGACATTTTGGCAGCGTCGAGGTATTCCTGTTGATCC
TGGAACCTTTCCATTTGGAAGTCAACATGTGTGGGATTTCTTCAAGCAGA
AAATCGCTTTCATCCAAATGACGGACCATGCTTACAAGAATTACCCAGAT
GCCCCTGTTGTTGGGACGTATGAATTATTTGGTCGTCCAAGCATCGTGAT
TCGAGACTTGGATATTGCTAAGAAAGTTTTGGTGaaagattttgaccaat
ttaTGGAAAGAAAGCCGGCATCTTCTAACGCTTATAATCCTCACACAAAG
AACAACCGATATCTACCAGTAATGCTAACTGAACTGCGTGGCCAGCAATG
GAAGAGTGTTCGAGCTTCACTGACACCTGTTTTTACCAGTGGGAAACTAA
AAGCCATGGTTCCGCTCATACACAAAATTGCCGATCACTGCGATATCTTT
CTAGAGAAAAATGTTGGTAAAGAAATCGAAGCCAAAGAATTATTGCGAAA
CTATGCATTAGATGTGATTGTAAGCACAGGTTTTGGTTATGAGAGCGATA
GCGTCAATGAGACTAACAGCATCTTCAAGACGAACGCAGACTTGATGGTT
GGCAAAACAATGAGTATCAAGATATTTTTGACTTTcctaatgtttttgtt
tttcccaAGTTTATTGAGGAAACTGGATTGGCCGCTTCTTGACAAGAAAG
GAGAGGGTTTTTTTGTTGCAGCTGTTAGGAAGGCGATCAAAGAACGCCAG
GAGAGTGGGGAGAGACGCAATGACTTTATTGATACTTGTCTCGATATCCT
TCagaaggaaaatgaagaaatcaaGACAAATGAAAAGTCAGAAGAAACGA
AACGACAAAAAGACGAAATCGAGAGAATTGTCATCGCGAACTCCCTGATC
ATGTTAATCGCTGGTGTTGATACTGTTTCAAGTACTTCCTCCATGATGAT
GTATTTCTTGGCTAAAAACCAGGATTGCCAAGAGAAACTTTACCAAGAGA
TCAAAGAAAGTATCGAGTCAACATGCTCTGATCAATTCGATTACGCTGCT
ATCATGAATATGCCGTATATGGAGAAATTCTTCCAAGAGAGTCTTAGAAT
GTATCCTGTGACCCACTTGGAACGTGGTTCAGTTAACGATTACAAAATTC
CAGGCACTGAAATGGTCATCCCGAAAGATATCGTTGTCCGTTTTCCCGTC
ACTGGtattgtaaaagatgagaaatattTCTCCAACCCGAATGTTTTTGA
CCCTGAGAATTTCAGTGCCGAAAAGAAAGCTGACAGACACCCGTTCGCGT
CCGGTGGATTCGGACACGGTCCGAGAAATTGTATTGCGCAACGTTTTGCC
ACCATGGAAGTGAAAATTGTGGTGGCCCGCATGTTGAGTAAATATAAAGT
CATCCCGTGTTCGAAAACTGTGGATGAATTGATTCCAGACCCCAAATCGC
GCTCCCAATTTCCCAAAGGCGATGTTTGGTTTAGTGTCGAAAAACGTTGA
GGTGTTTTCAATCCAATCTTAGGTTACATCAAGGTTacataaattttgat
aataCAAAAAAAGACTAAACCGTAGTTTTTTACAAGGCATACTGTgacaa
tattttaaaattcaattacACTTTCGCCAGCAGATGTCAGAAGACAAGCA
TAATATCAGCATATGACTTTAACAAATTATCTTGTTCTCAgggtttctta
aaaaaaaaggatGGCTGTTTTGTTATTAACGTTAGATTTCATTCAAATTA
CATAAGCNcaaacaaatcaaaaactcaCAAACTTGTTGGGTTACCAGAGA
GGAAACTTTTGATTAATGTTTTTAGAATGTGCTT Coding sequence (CDS) from alignment at scaffold_511:209771..219404+ >TCONS_00069887 ID=TCONS_00069887|Name=TCONS_00069887|organism=Clytia hemisphaerica|type=CDS|length=3120bp|location=Sequence derived from alignment at scaffold_511:209771..219404+ (Clytia hemisphaerica)
ATGTGGTGGCAGATATTGTTAACTGCGTTTATCGTGGCTTTTACAGCCTT
TTATTTCTATGTCAGACATAGGATGACATTTTGGCAGCGTCGAGGTATTC
CTGTTGATCCTGGAACCTTTCCATTTGGAAGTCAACATGTGTGGGATTTC
TTCAAGCAGAAAATCGCTTTCATCCAAATGACGGACCATGCTTACAAGAA
TTACCCAGATGCCCCTGTTGTTGGGACGTATGAATTATTTGGTCGTCCAA
GCATCGTGATTCGAGACTTGGATATTGCTAAGAAAGTTTTGGTGaaagat
tttgaccaatttaTGGAAAGAAAGCCGGCATCTTCTAACGCTTATAATCC
TCACACAAAGAACAACCGATATCTACCAGTAATGCTAACTGAACTGCGTG
GCCAGCAATGGAAGAGTGTTCGAGCTTCACTGACACCTGTTTTTACCAGT
GGGAAACTAAAAGCCATGGTTCCGCTCATACACAAAATTGCCGATCACTG
CGATATCTTTCTAGAGAAAAATGTTGGTAAAGAAATCGAAGCCAAAGAAT
TATTGCGAAACTATGCATTAGATGTGATTGTAAGCACAGGTTTTGGTTAT
GAGAGCGATAGCGTCAATGAGACTAACAGCATCTTCAAGACGAACGCAGA
CTTGATGGTTGGCAAAACAATGAGTATCAAGATATTTTTGACTTTcctaa
tgtttttgtttttcccaAGTTTATTGAGGAAACTGGATTGGCCGCTTCTT
GACAAGAAAGGAGAGGGTTTTTTTGTTGCAGCTGTTAGGAAGGCGATCAA
AGAACGCCAGGAGAGTGGGGAGAGACGCAATGACTTTATTGATACTTGTC
TCGATATCCTTCagaaggaaaatgaagaaatcaaGACAAATGAAAAGTCA
GAAGAAACGAAACGACAAAAAGACGAAATCGAGAGAATTGTCATCGCGAA
CTCCCTGATCATGTTAATCGCTGGTGTTGATACTGTTTCAAGTACTTCCT
CCATGATGATGTATTTCTTGGCTAAAAACCAGGATTGCCAAGAGAAACTT
TACCAAGAGATCAAAGAAAGTATCGAGTCAACATGCTCTGATCAATTCGA
TTACGCTGCTATCATGAATATGCCGTATATGGAGAAATTCTTCCAAGAGA
GTCTTAGAATGTATCCTGTGACCCACTTGGAACGTGGTTCAGTTAACGAT
TACAAAATTCCAGGCACTGAAATGGTCATCCCGAAAGATATCGTTGTCCG
TTTTCCCGTCACTGGtattgtaaaagatgagaaatattTCTCCAACCCGA
ATGTTTTTGACCCTGAGAATTTCAGTGCCGAAAAGAAAGCTGACAGACAC
CCGTTCGCGTCCGGTGGATTCGGACACGGTCCGAGAAATTGTATTGCGCA
ACGTTTTGCCACCATGGAAGTGAAAATTGTGGTGGCCCGCATGTTGAGTA
AATATAAAGTCATCCCGTGTTCGAAAACTGTGGATGAATTGATTCCAGAC
CCCAAATCGCGCTCCCAATTTCCCAAAGGCGATGTTTGGTTTAGTGTCGA
AAAACGTTGAATGTGGTGGCAGATATTGTTAACTGCGTTTATCGTGGCTT
TTACAGCCTTTTATTTCTATGTCAGACATAGGATGACATTTTGGCAGCGT
CGAGGTATTCCTGTTGATCCTGGAACCTTTCCATTTGGAAGTCAACATGT
GTGGGATTTCTTCAAGCAGAAAATCGCTTTCATCCAAATGACGGACCATG
CTTACAAGAATTACCCAGATGCCCCTGTTGTTGGGACGTATGAATTATTT
GGTCGTCCAAGCATCGTGATTCGAGACTTGGATATTGCTAAGAAAGTTTT
GGTGaaagattttgaccaatttaTGGAAAGAAAGCCGGCATCTTCTAACG
CTTATAATCCTCACACAAAGAACAACCGATATCTACCAGTAATGCTAACT
GAACTGCGTGGCCAGCAATGGAAGAGTGTTCGAGCTTCACTGACACCTGT
TTTTACCAGTGGGAAACTAAAAGCCATGGTTCCGCTCATACACAAAATTG
CCGATCACTGCGATATCTTTCTAGAGAAAAATGTTGGTAAAGAAATCGAA
GCCAAAGAATTATTGCGAAACTATGCATTAGATGTGATTGTAAGCACAGG
TTTTGGTTATGAGAGCGATAGCGTCAATGAGACTAACAGCATCTTCAAGA
CGAACGCAGACTTGATGGTTGGCAAAACAATGAGTATCAAGATATTTTTG
ACTTTcctaatgtttttgtttttcccaAGTTTATTGAGGAAACTGGATTG
GCCGCTTCTTGACAAGAAAGGAGAGGGTTTTTTTGTTGCAGCTGTTAGGA
AGGCGATCAAAGAACGCCAGGAGAGTGGGGAGAGACGCAATGACTTTATT
GATACTTGTCTCGATATCCTTCagaaggaaaatgaagaaatcaaGACAAA
TGAAAAGTCAGAAGAAACGAAACGACAAAAAGACGAAATCGAGAGAATTG
TCATCGCGAACTCCCTGATCATGTTAATCGCTGGTGTTGATACTGTTTCA
AGTACTTCCTCCATGATGATGTATTTCTTGGCTAAAAACCAGGATTGCCA
AGAGAAACTTTACCAAGAGATCAAAGAAAGTATCGAGTCAACATGCTCTG
ATCAATTCGATTACGCTGCTATCATGAATATGCCGTATATGGAGAAATTC
TTCCAAGAGAGTCTTAGAATGTATCCTGTGACCCACTTGGAACGTGGTTC
AGTTAACGATTACAAAATTCCAGGCACTGAAATGGTCATCCCGAAAGATA
TCGTTGTCCGTTTTCCCGTCACTGGtattgtaaaagatgagaaatattTC
TCCAACCCGAATGTTTTTGACCCTGAGAATTTCAGTGCCGAAAAGAAAGC
TGACAGACACCCGTTCGCGTCCGGTGGATTCGGACACGGTCCGAGAAATT
GTATTGCGCAACGTTTTGCCACCATGGAAGTGAAAATTGTGGTGGCCCGC
ATGTTGAGTAAATATAAAGTCATCCCGTGTTCGAAAACTGTGGATGAATT
GATTCCAGACCCCAAATCGCGCTCCCAATTTCCCAAAGGCGATGTTTGGT
TTAGTGTCGAAAAACGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069887-exon-scaffold_511-1491911889:209771..210083 | TCONS_00069887-exon-scaffold_511-1491911889:209771..210083 | Clytia hemisphaerica | exon |
| TCONS_00069887-exon-scaffold_511-1510915933:209771..210083 | TCONS_00069887-exon-scaffold_511-1510915933:209771..210083 | Clytia hemisphaerica | exon |
| TCONS_00069887-exon-scaffold_511-1575043694:209771..210083 | TCONS_00069887-exon-scaffold_511-1575043694:209771..210083 | Clytia hemisphaerica | exon |
| TCONS_00069887-exon-scaffold_511-1491911889:217588..219404 | TCONS_00069887-exon-scaffold_511-1491911889:217588..219404 | Clytia hemisphaerica | exon |
| TCONS_00069887-exon-scaffold_511-1510915933:217588..219404 | TCONS_00069887-exon-scaffold_511-1510915933:217588..219404 | Clytia hemisphaerica | exon |
| TCONS_00069887-exon-scaffold_511-1575043694:217588..219404 | TCONS_00069887-exon-scaffold_511-1575043694:217588..219404 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:209771..219404 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00069887 vs. Swiss-Prot (Human)
Match: CP3A4 (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4) HSP 1 Score: 203.371 bits (516), Expect = 8.905e-57 Identity = 146/479 (30.48%), Postives = 235/479 (49.06%), Query Frame = 3
Query: 294 YVRHRMTFWQRRGIPVDPGTFPFGSQHVWDFFKQKIAFIQMTDHAYKNYPDAPVVGTYELFGRPSIVIRDLDIAKKVLVKD-FDQFMERKPASSNAYNPHTKNNRYLPVMLTELRGQQWKSVRASLTPVFTSGKLKAMVPLIHKIADHC--DIFLEKNVGKEIEAKELLRNYALDVIVSTGFGYESDSVNETNSIFKTNADLMVGKTMSIKIFLTFLMFLFFPSLLRKLDWPLLDKKGEGFFVAAVRKAIKERQESGER-RNDFIDTCLDILQKENEEIKTNEKSEETKRQKDEIERIVIANSLIMLIAGVDTVXXXXXXXXYFLAKNQDCQEKLYQEIKESIESTCSDQFDYAAIMNMPYMEKFFQESLRMYPVT-HLERGSVNDYKIPGTEMVIPKDIVVRFPVTGIVKDEKYFSNPNVFDPENFSAEKKADRHPFASGGFGHGPRNCIAQRFATMEVKIVVARMLSKYKVIPCSKT 1715
Y H +++ GIP P PF + + F +K Y V G Y+ +P + I D D+ K VLVK+ + F R+P + + ++ ++WK +R+ L+P FTSGKLK MVP+I + D ++ E GK + K++ Y++DVI ST FG DS+N F N ++ FL+ +F F +L L+ + ++ F +V++ + R E ++ R DF+ +D ++ S+ET+ K + ++A S+I + AG +T SS S +MY LA + D Q+KL +EI + + +D ++ M Y++ E+LR++P+ LER D +I G M IPK +VV P + +D KY++ P F PE FS + K + P+ FG GPRNCI RFA M +K+ + R+L + PC +T
Sbjct: 25 YGTHSHGLFKKLGIP-GPTPLPF----LGNILSYHKGFCMFDMECHKKY--GKVWGFYD-GQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGF---------MKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMID-----------SQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYD--TVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEING--MFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKET 471
The following BLAST results are available for this feature:
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