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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069880 ID=TCONS_00069880|Name=TCONS_00069880|organism=Clytia hemisphaerica|type=transcript|length=986bp
ATTTTCTCCAAAACTAGTCCCTTGTGAAATAATTTCAATCAACTCTTAAA
ATAACAAAGCCAGAGTCCCAAAGCGATGCATTAGTGGCGATACAAGTGAT
TACCAAGGAATTCCCAATGGAAGATCTTTAGCTCtttaaaatgagataaa
atgatGCACTTGGCACAAACGCATTAAAGAAATTTGAGTTGTTTAAAATC
GTTCCAGAAAACACAGCAAAGATGAAACTTGCAATTTCACTTGTTGGACT
ATTCGTCCTCGGTTGTGTTGCTACACCTTTAGCAATTCTTGAGGAAAATG
ATCCAATACTGATTAAGGGTGAACATATCCTTCCTGATAGACTTGAAAAC
GATTTATCAGAAATTTACGAAGATATCATTGATAAAAGTTTTGTCAGACC
TGCATCTACTCGCCGAGcaatgaaatcaaaaagaagGATTTCCACTAACA
AACCATCGACCGGTGTTCcaagaaaaatgtcagaaaaacaGACTACTGGA
GGCGTTTCTGAAACTACCACGCCATCACGCCCCACTGAATCCACTCTACC
AACAACTAGCGCTTCCATTCAAGAAGAGTCGACCCCTTCTGTAGAATCCA
CTGAAGCTATCATTGAACAAACAACTACACCGTTTATCCAAAGTGAAAGT
ACTGAGAAACCCAAACCAAGTATTGTAAGGGTACTCAAAGGATTGATCAA
GAAATTGCAAAACTTACACAATCGGAATGTTGCATTATGGGAAATTGTTG
ACACTATTCAGAATCGAATGGATCacgttttcaaaaatgaatCGAACGAA
TGAACAGCCATTTTGGATTTTACCAATGCTTATGttatatttaatttatt
ttgacatttaGAACAGTTCAGATTTCATGTAGATATTTATTCGAAATAAT
ATAACTTTCCATTGAAACGTTGTCTTCAGAAATCTTGAAACCTAAAACGA
Gaaacaatgttttgaaaaagattatttcaagtagaa Run BLAST on NCBI transcript from alignment at scaffold_511:165036..167688+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069880 ID=TCONS_00069880|Name=TCONS_00069880|organism=Clytia hemisphaerica|type=transcript|length=2653bp|location=Sequence derived from alignment at scaffold_511:165036..167688+ (Clytia hemisphaerica)
ATTTTCTCCAAAACTAGTCCCTTGTGAAATAATTTCAATCAACTCTTAAA
ATAACAAAGCCAGAGTCCCAAAGCGATGCATTAGTGGCGATACAAGTGAT
TACCAAGGAATTCCCAATGGAAGATCTTTAGCTCtttaaaatgagataaa
atgatGCACTTGGCACAAACGCATTAAAGAAATTTGAGTTGTTTAAAATC
GTTCCAGAAAACACAGCAAAGATGAAACTTGCAATTTCACTTGTTGGACT
ATTCGTCCTCGGTAGGATTTTTCAACAATCTTCTTTACCTTTTTCATCAG
CATTACTtcagcaaattttttatttaaagaaaGAAACTTCCTGTTCGTAT
CATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTATTTCAACA
CAATCACGCTACTTTGTTTTCATTCCTGATCTTTTTTAGTGTAACCCGGT
CCTTACAAATTCGAAATGGCTTATTCGCCACATCATGTATATTTTCATAC
ATCCCTTTAAAGCTTTAGCGTGGTGTACCGAAAACAATGACAATCTGATT
GTACGTTACTTTCAGCCAAATGTTGATTTTCTCCAAAACTAGTCCCTTGT
GAAATAATTTCAATCAACTCTTAAAATAACAAAGCCAGAGTCCCAAAGCG
ATGCATTAGTGGCGATACAAGTGATTACCAAGGAATTCCCAATGGAAGAT
CTTTAGCTCtttaaaatgagataaaatgatGCACTTGGCACAAACGCATT
AAAGAAATTTGAGTTGTTTAAAATCGTTCCAGAAAACACAGCAAAGATGA
AACTTGCAATTTCACTTGTTGGACTATTCGTCCTCGGTAGGATTTTTCAA
CAATCTTCTTTACCTTTTTCATCAGCATTACTtcagcaaattttttattt
aaagaaaGAAACTTCCTGTTCGTATCATTTTCTTCCAATGTAGTCTCTTT
AATTCAAACATCTATAAACTGAATGTCTCCTTGATTCGAAAAAGTTTTAT
AGTCCCTTCAGTCAATGTCTTGTTACCCCAcaactgaaatttccttaact
caaacaaatttacGTCCCCCGTGGACGTTCGAGCTATGGAGACTCCCCCT
GTTACGAATTTTTCTAAGCATCTTTAATGAGTTATACACACTTTGGTGAA
AGTTACtgttcgatttatatatcttcattttctttactGTACAGGTTGTG
TTGCTACACCTTTAGCAATTCTTGAGGAAAATGATCCAATACTGATTAAG
GGTGAACNTCCTTgactcgaaaaagttttataGTCCCTTCAGTCAATGTC
TTGTTACCCCAcaactgaaatttccttaactcaaacaaatttacGTCCCC
CGTGGACGTTCGAGCTATGGAGACTCCCCCTGTTACGAATTTTTCTAAGC
ATCTTTAATGAGTTATACACACTTTGGTGAAAGTTACtgttcgatttata
tatcttcattttctttactGTACAGGTTGTGTTGCTACACCTTTAGCAAT
TCTTGAGGAAAATGATCCAATACTGATTAAGGGTGAACATATCCTTCCTG
ATAGACTTGAAAACGATTTATCAGAAATTTACGAAGATATCATTGATAAA
AGTTTTGTCAGACCTGCATCTACTCGCCGAGcaatgaaatcaaaaagaag
GATTTCCACTAACAAACCATCGACCGGTGTTCcaagaaaaatgtcagaaa
aacaGACTACTGGAGGCGTTTCTGAAACTACCACGCCATCACGCCCCACT
GAATCCACTCTACCAACAACTAGCGCTTCCATTCAAGAAGAGTCGACCCC
TTCTGTAGAATCCACTGAAGCTATCATTGAACAAACAACTACACCGTTTA
TCCAAAGTGAAAGTACTGAGAAACCCAAACCAAGTATTGTAAGGGTACTC
AAAGGTAAGATTTTTTGCTGCTTTTGTCTCGCAATTCCTTTAGAAGCATT
GCATTTTGGATTCTGGCAAAGTTATCTTAAACATAAATTTTCGAGAACAC
CTGAATTAGGACTTGAATTCGTTCTTATCGAAAACATCTTTCAGTCTGAT
GGTAATAAGAGGTTAGTAAGGATGTTTTTGAACCTTTAAAATTCAATATC
TGGAGTTGTCATTTCGCGATCCAGTTTAGCCGGTATTTCACCAGATTATA
GTCTGGATTGTTTTTCAGTGAAACAGGGACGATATATTCACATCTCTAAT
ATTTCAGGATTGATCAAGAAATTGCAAAACTTACACAATCGGAATGTTGC
ATTATGGGAAATTGTTGACACTATTCAGAATCGAATGGATCacgttttca
aaaatgaatCGAACGAATGAACAGCCATTTTGGATTTTACCAATGCTTAT
GttatatttaatttattttgacatttaGAACAGTTCAGATTTCATGTAGA
TATTTATTCGAAATAATATAACTTTCCATTGAAACGTTGTCTTCAGAAAT
CTTGAAACCTAAAACGAGaaacaatgttttgaaaaagattatttcaagta
gaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069880-exon-scaffold_511-1491911889:165036..165296 | TCONS_00069880-exon-scaffold_511-1491911889:165036..165296 | Clytia hemisphaerica | exon |
| TCONS_00069880-exon-scaffold_511-1510915933:165036..165296 | TCONS_00069880-exon-scaffold_511-1510915933:165036..165296 | Clytia hemisphaerica | exon |
| TCONS_00069880-exon-scaffold_511-1575043694:165036..165296 | TCONS_00069880-exon-scaffold_511-1575043694:165036..165296 | Clytia hemisphaerica | exon |
| TCONS_00069880-exon-scaffold_511-1491911889:166661..167089 | TCONS_00069880-exon-scaffold_511-1491911889:166661..167089 | Clytia hemisphaerica | exon |
| TCONS_00069880-exon-scaffold_511-1510915933:166661..167089 | TCONS_00069880-exon-scaffold_511-1510915933:166661..167089 | Clytia hemisphaerica | exon |
| TCONS_00069880-exon-scaffold_511-1575043694:166661..167089 | TCONS_00069880-exon-scaffold_511-1575043694:166661..167089 | Clytia hemisphaerica | exon |
| TCONS_00069880-exon-scaffold_511-1491911889:167393..167688 | TCONS_00069880-exon-scaffold_511-1491911889:167393..167688 | Clytia hemisphaerica | exon |
| TCONS_00069880-exon-scaffold_511-1510915933:167393..167688 | TCONS_00069880-exon-scaffold_511-1510915933:167393..167688 | Clytia hemisphaerica | exon |
| TCONS_00069880-exon-scaffold_511-1575043694:167393..167688 | TCONS_00069880-exon-scaffold_511-1575043694:167393..167688 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:165036..167688 + |
Blast
The following BLAST results are available for this feature:
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