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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069867 ID=TCONS_00069867|Name=TCONS_00069867|organism=Clytia hemisphaerica|type=transcript|length=1567bp
CGTTTTTGTAATGGATATCTTTCAATGAATCGATTTAGAAGACTCCCTAC
TGTGTATGATGTAAGAGACAggcttgtttttgttttagttcgGATTTCCC
GCGTCCTCTCTCCCTCTTCCCTCCGTcatcttttcattgtttttctcTCC
CGTATTAAAATACTCATTTGTAATAGTCTATTGTTCGAACAGAGTGGTAT
AAAACGAAAGTAGAAACAGTCAGCTACCTATTTTCTCTTCATTCTTCATT
TTTGATAGATTTTCATATATATCGGTATAGATTTGTCAAATTGGTATCAT
GGATAGtacaCATCTATGTACATTGCTGACATTAGGGGTTGTCTTCTTTT
CAACAACAAGCGCACAACCCTACCTACGACCCTCATATCCACTCAAATAT
CAACGTTCAATACCATACGAGCCAGGGTATGAAGCAAACCCTATACGATG
GGGAAAGAGAAACTCTCTTTACCAAGACACCGAAGATGCTGGTCTTTGGG
GGAAACGACAGGAAGAACTTGGTGAAGGGTTATGGGGCAAGCGAGACATT
GATGACGTCAGACTTTATAGTAAGCGAGTCCAACTGAAACCTCGACAGGA
TCCGGAAATAATGACAACGAATGATATTTCGGATTTGTTAGAACGCGATA
ATAAAGCTATGGTAGAAAGCTTAGTGAAGTTGCGTCTCGATGTAGACGAG
GCTTTAAGACATTTTAATATCGTAGAAATTCAAGAGGATAAAAGACAAGA
CCTCGAATCTGCTGGGTTATGGGGGTAAATGAATGCGAATATCTATTGGT
CATAAGAGGTACATCCTATGAAGAGGAAAAGACAGCGATGGATGACTGTT
GAGGCAACCTTTGGTTCGGACAGAATTTAGCTTGTCTAATATGCAATTAG
AAATTTCTTACATATTTTtgttaaataaaataattcttctTTTGTATACT
ATGAAATATCACAATGATAGAAAAATCATTGCATCATGAAAATCGCACAA
GACATAAGTCAATAATAATGGAGAGTATTTGTTTGTAGTCCCGCTCCTAA
ATTCACATTGCTAGAATCTTTAAATTTTGCATGAGCAGATGGTTCAAGAA
ATTTTACAGGGAAGCCAGTCTGGTGGTTACGATTCCTAGATAATTCTTTC
CTTAGgtagccttcttcttttcaaatagttttcaaatATCCATATCTGCC
TGACTTTCATCTTCTCTCTGTCTTCTCAAATTGTTGTTGCCATTGCTATG
GTACCTATACCGTACAGTGCACACAAATATTGAAGACATACATCCAATTA
TCAAAAACTACCTGAAGAGAAGGACAACGAGCAACTTATAAACAATAATC
ACTGTCAAGCAATCCACCAGCTTAGTGGCCATCAACATCTCAGCCTTTGA
TTTGGTAAACTGTCcaaatttcttgtttttatcaacaataattccttttg
aagaattttccttTTCACTTTTACTTTCTTCGTCACTTATATTGCTGGTA
ATTTCTTCCTGTGTCTTTTCTTCTTTAGATGCAGGGAAATTACACAAGTC
TTTGTAACACCAGTAAG Run BLAST on NCBI transcript from alignment at scaffold_511:55767..59406+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069867 ID=TCONS_00069867|Name=TCONS_00069867|organism=Clytia hemisphaerica|type=transcript|length=3640bp|location=Sequence derived from alignment at scaffold_511:55767..59406+ (Clytia hemisphaerica)
CGTTTTTGTAATGGATATCTTTCAATGAATCGATTTAGAAGACTCCCTAC
TGTGTATGATGTAAGAGACAggcttgtttttgttttagttcgGATTTCCC
GCGTCCTCTCTCCCTCTTCCCTCCGTcatcttttcattgtttttctcTCC
CGTATTAAAATACTCATTTGTAATAGTCTATTGTTCGAACAGAGTGGTAT
AAAACGAAAGTAGAAACAGTCAGCTACCTATTTTCTCTTCATTCTTCATT
TTTGATAGATTTTCATATATATCGGTATAGATTTGTCAAATTGGTATCAT
GGATAGGTGAGTTATACTTCATTTTTCGTGCTTCTACATTAAGCACACTA
AGGGTACTACGAAACCCCATTGTTTCAATGGTCTGGTTGGTTTACCATTT
AGTACCATTTACAAGTGTGAGTTTTCTAAGAGCTACAATATCTATAGGCT
AGGAAAcacatctttattttgatgagCTCATGGGGTGATGGGGCAAGTGA
AAGAAATTGACGGTTTTCCTGATAGAGCANTCCTTTTTCATTCTTGATTT
GGAGCTTTTTATTTTATGCAATAAGCTTTCACTCTTTTGAATTATTTTGC
AGATCATTTTATTTGCCACCGTTGAGGACCATTTTTAAACACTCAGTTAC
TTATTGTatcaaaaatgcaatttttcccaaTATTATTTGAACTAATTTTC
GAGTAAAAATCTTTGAATTTCGAATGAACCggtttattttcttcttttgt
ttcctGGCGCAGGTTGTAGTATTTCCAGCTTGTTCCTTTGAAACTTCGTG
ACCATTTTTTTTGTCTATTCTCAAAAGTCTGAGAATGTgtatcgagtgcc
cccccccgggaaatattaccatattagtgtctagcagactgtatcaataT
GCATGTTTACTATTGGCGAATTTCCCAGAAACCttcaagtgtaattgaaa
ttaattttttttaaaagaaatcttctacatgattcccaaatgtataacag
tagttactaaactattaattatggtaatgttacttcaatggaatcgaaat
aataggcaGACCTTTATGTTGTTatgattctttttaaaaagcgttgatga
cattttttatttgtgttttcaacgacgcaaatgaaaatatcaactttgaa
cttaatccaagatcttggattgtcgtcatTGTTACTTTTCTCAGCGTTGG
GCTCTATAGAATCTCGATTAGTCGGCacaggtcgatatatgatttcgacc
tgtgcttttcacggtacatcCCAACTGgatgaaaaaattctaccggatct
gtgagaagggggtgtaataaTCAAAGCCACTTAGGAAAAGCCCTTCTTGT
TCAGATCTTAAACGGGTGTAGTTATGGCAAAGGAAAGATTTTCCGGCGTA
ATTATTTCTTGCGTGGCCGGATTTAACATGAGAATACTACCCAAGGGGAG
CTAATCCGGCCTTAAAAGACAAGAATCGAAAAATATATAGGATGACGACA
GCATATAAGACTTGAGATATGGTCGtagaatatttttgataaaaataaaa
acatattttggtCAAATGTGGTTTATTATTAGAGCGCTTGTTTTTTGAGG
GTACGGACCTCATGTTGGGATGAAAGGAGCGAATAATTTCCCCATTTGGT
AGGGAAAAGATAGAATTCTAAACAGAGATGAAGAAATAATAGGAGCTTGA
TAAGAAGGGTATATCGTTTACAATTGTGTCCGTTTTTGTAATGGATATCT
TTCAATGAATCGATTTAGAAGACTCCCTACTGTGTATGATGTAAGAGACA
gacttgtttttgttttagttcgGATTTCCCGCGTCCTCTCTCCCCCTTCC
CTCCGTcatcttttcattgtttttctcTCCCGTATTGAAATACTCATTTG
TAATAGTCTATTGTTCGAACAGAGTGGTATAAAACGAAAGTAGAAACAGT
CAGCTACCTATTTTCTCTTCATTCTTCATTTTTGATAGATTTTCATATAT
ATCGGTATAGATTTGTCAAATTGGTATCATGGATAGGTGAGTTATACTTC
ATTTTTCGTGCTTCTACATTAAGCACACTAAGGGTACTACGAAACCCCAT
TGTTTCAATGGTCTGGTTGGTTTACCATTTAGTACCATTTACAAGTGTGA
GTTTTCTAAGAGCTACAATATCTATAGGCTAGGAAAcacatctttatttt
gatgagCTCATGGGGTGATGGGGCAAGTGAAAGAAATTGACGGTTTTCCT
GATAGAGCATATCATCACTGGCTGGGGGACCAAAAAAGTGACGGGATTTC
AAATTCTAGCATCTCCAACCAAAAAAGCCGTaacatctttcaaaaaaaaa
aaactcaccagacttttattttttttcagtacaCATCTATGTACATTGCT
GACATTAGGGGTTGTCTTCTTTTCAACAACAAGCGCACAACCCTACCTAC
GACCCTCATATCCACTCAAATATCAACGTTCAATACCATACGAGCCAGGG
TATGAAGCAAACCCTATACGATGGGGAAAGAGAAACTCTCTTTACCAAGA
CACCGAAGATGCTGGTCTTTGGGGGAAACGACAGGAAGAACTTGGTGAAG
GGTTATGGGGCAAGCGAGACATTGATGACGTCAGACTTTATAGTAAGCGA
GTCCAACTGAAACCTCGACAGGATCCGGAAATAATGACAACGAATGATAT
TTCGGATTTGTTAGAACGCGATAATAAAGCTATGGTAGAAAGCTTAGTGA
AGTTGCGTCTCGATGTAGACGAGGCTTTAAGACATTTTAATATCGTAGAA
ATTCAAGAGGATAAAAGACAAGACCTCGAATCTGCTGGGTTATGGGGGTA
AATGAATGCGAATATCTATTGGTCATAAGAGGTACATCCTATGAAGAGGA
AAAGACAGCGATGGATGACTGTTGAGGCAACCTTTGGTTCGGACAGAATT
TAGCTTGTCTAATATGCAATTAGAAATTTCTTACATATTTTtgttaaata
aaataattcttctTTTGTATACTATGAAATATCACAATGATAGAAAAATC
ATTGCATCATGAAAATCGCACAAGACATAAGTCAATAATAATGGAGAGTA
TTTGTTTGTAGTCCCGCTCCTAAATTCACATTGCTAGAATCTTTAAATTT
TGCATGAGCAGATGGTTCAAGAAATTTTACAGGGAAGCCAGTCTGGTGGT
TACGATTCCTAGATAATTCTTTCCTTAGgtagccttcttcttttcaaata
gttttcaaatATCCATATCTGCCTGACTTTCATCTTCTCTCTGTCTTCTC
AAATTGTTGTTGCCATTGCTATGGTACCTATACCGTACAGTGCACACAAA
TATTGAAGACATACATCCAATTATCAAAAACTACCTGAAGAGAAGGACAA
CGAGCAACTTATAAACAATAATCACTGTCAAGCAATCCACCAGCTTAGTG
GCCATCAACATCTCAGCCTTTGATTTGGTAAACTGTCcaaatttcttgtt
tttatcaacaataattccttttgaagaattttccttTTCACTTTTACTTT
CTTCGTCACTTATATTGCTGGTAATTTCTTCCTGTGTCTTTTCTTCTTTA
GATGCAGGGAAATTACACAAGTCTTTGTAACACCAGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069867-exon-scaffold_511-1491911889:55767..56072 | TCONS_00069867-exon-scaffold_511-1491911889:55767..56072 | Clytia hemisphaerica | exon |
| TCONS_00069867-exon-scaffold_511-1510915933:55767..56072 | TCONS_00069867-exon-scaffold_511-1510915933:55767..56072 | Clytia hemisphaerica | exon |
| TCONS_00069867-exon-scaffold_511-1575043694:55767..56072 | TCONS_00069867-exon-scaffold_511-1575043694:55767..56072 | Clytia hemisphaerica | exon |
| TCONS_00069867-exon-scaffold_511-1491911889:58146..59406 | TCONS_00069867-exon-scaffold_511-1491911889:58146..59406 | Clytia hemisphaerica | exon |
| TCONS_00069867-exon-scaffold_511-1510915933:58146..59406 | TCONS_00069867-exon-scaffold_511-1510915933:58146..59406 | Clytia hemisphaerica | exon |
| TCONS_00069867-exon-scaffold_511-1575043694:58146..59406 | TCONS_00069867-exon-scaffold_511-1575043694:58146..59406 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:55767..59406 + |
Blast
The following BLAST results are available for this feature:
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