TCONS_00069856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069856
Unique NameTCONS_00069856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069856 ID=TCONS_00069856|Name=TCONS_00069856|organism=Clytia hemisphaerica|type=transcript|length=390bp
ATCCTAATAGTGCCGTTGATGGTGTAAAAACTTTTCGCAAGTTTCTTTTT
GAACAGTGCATTACACTTTCCGAAGAGACCCCTGTAGTAGGGGCAAAGGG
ATTCGTTGATATAAATTTTATGGCCAACCTTCTTCTCACGGAGAGAGTTC
TTTTGACCATCAGTTAAGTCTTTGAGTTTTTTTCTACTTCTCAAAGCGTT
CAAGACGGTTCTGCGGTTTACAGATTTCATAATTAAAACGTTATTGTCTT
TTAGTTTGTGTATAGCATGGAAGTCAGACTTCTTGTATACGTTACCACCA
TCAGTGGTGGCATTCAGGACAGCAATAGCAGCATCTtctacattttcatt
ttcgacTGCTTCAAACCCATGTAACTCGATACACTCTCTG
Run BLAST on NCBI

protein sequence of TCONS_00069856-protein

>TCONS_00069856-protein ID=TCONS_00069856-protein|Name=TCONS_00069856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
RECIELHGFEAVENENVEDAAIAVLNATTDGGNVYKKSDFHAIHKLKDNN
VLIMKSVNRRTVLNALRSRKKLKDLTDGQKNSLREKKVGHKIYINESLCP
YYRGLFGKCNALFKKKLAKSFYTINGTIR
Run BLAST on NCBI

transcript from alignment at scaffold_51:212198..212587

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069856 ID=TCONS_00069856|Name=TCONS_00069856|organism=Clytia hemisphaerica|type=transcript|length=390bp|location=Sequence derived from alignment at scaffold_51:212198..212587 (Clytia hemisphaerica)
CAGAGAGTGTATCGAGTTACATGGGTTTGAAGCAgtcgaaaatgaaaatg
tagaAGATGCTGCTATTGCTGTCCTGAATGCCACCACTGATGGTGGTAAC
GTATACAAGAAGTCTGACTTCCATGCTATACACAAACTAAAAGACAATAA
CGTTTTAATTATGAAATCTGTAAACCGCAGAACCGTCTTGAACGCTTTGA
GAAGTAGAAAAAAACTCAAAGACTTAACTGATGGTCAAAAGAACTCTCTC
CGTGAGAAGAAGGTTGGCCATAAAATTTATATCAACGAATCCCTTTGCCC
CTACTACAGGGGTCTCTTCGGAAAGTGTAATGCACTGTTCAAAAAGAAAC
TTGCGAAAAGTTTTTACACCATCAACGGCACTATTAGGAT

Coding sequence (CDS) from alignment at scaffold_51:212198..212587

>TCONS_00069856 ID=TCONS_00069856|Name=TCONS_00069856|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_51:212198..212587 (Clytia hemisphaerica)
AGAGAGTGTATCGAGTTACATGGGTTTGAAGCAgtcgaaaatgaaaatgt
agaAGATGCTGCTATTGCTGTCCTGAATGCCACCACTGATGGTGGTAACG
TATACAAGAAGTCTGACTTCCATGCTATACACAAACTAAAAGACAATAAC
GTTTTAATTATGAAATCTGTAAACCGCAGAACCGTCTTGAACGCTTTGAG
AAGTAGAAAAAAACTCAAAGACTTAACTGATGGTCAAAAGAACTCTCTCC
GTGAGAAGAAGGTTGGCCATAAAATTTATATCAACGAATCCCTTTGCCCC
TACTACAGGGGTCTCTTCGGAAAGTGTAATGCACTGTTCAAAAAGAAACT
TGCGAAAAGTTTTTACACCATCAACGGCACTATTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043505XLOC_043505Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069856-proteinTCONS_00069856-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069856-exon-scaffold_51-1491911889:212198..212587TCONS_00069856-exon-scaffold_51-1491911889:212198..212587Clytia hemisphaericaexon
TCONS_00069856-exon-scaffold_51-1510915933:212198..212587TCONS_00069856-exon-scaffold_51-1510915933:212198..212587Clytia hemisphaericaexon
TCONS_00069856-exon-scaffold_51-1575043694:212198..212587TCONS_00069856-exon-scaffold_51-1575043694:212198..212587Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_51supercontigscaffold_51:212198..212587 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.158234	0.477301	0.383253	0.30565	4.26134	4.57067	3.16753	1.7455	0.638451	0.493021	0	0.285343	0	0.347659	0.310372	0	0	0.301635	0.119922	0.436073	0.438515	0.689279	0	0.309647	0.210447	0.335516	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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