TCONS_00069855 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069855
Unique NameTCONS_00069855
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069855 ID=TCONS_00069855|Name=TCONS_00069855|organism=Clytia hemisphaerica|type=transcript|length=303bp
CTGCTTCAAGGGCATGTGTAAGTAAAGATACATCGCATCGGACTTCCAAT
CACCCATGATTGCAATAGAGTCAAGAGGGACACCAGCCTCTAATGCAAAA
GTGGCCCCACCACGTCTGAATGAGTGTGACCCATATTGACGGTGTGAGTG
CCCAGAACGAGACAGGTGAGCCTGAAGGATGCGCATGAAATCTCGGTAGA
CAAAAATCCTATTCGACCCAAGATGAGAATCTCTCCAACATAAGGCTTGA
TCAGATGGGAGTGCCCCAGGGGTGAGGGAGAAGGCACGAGAAACAGCCAA
AAC
Run BLAST on NCBI

protein sequence of TCONS_00069855-protein

>TCONS_00069855-protein ID=TCONS_00069855-protein|Name=TCONS_00069855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
VLAVSRAFSLTPGALPSDQALCWRDSHLGSNRIFVYRDFMRILQAHLSRS
GHSHRQYGSHSFRRGGATFALEAGVPLDSIAIMGDWKSDAMYLYLHMPLK
Q
Run BLAST on NCBI

transcript from alignment at scaffold_51:198943..199245

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069855 ID=TCONS_00069855|Name=TCONS_00069855|organism=Clytia hemisphaerica|type=transcript|length=303bp|location=Sequence derived from alignment at scaffold_51:198943..199245 (Clytia hemisphaerica)
GTTTTGGCTGTTTCTCGTGCCTTCTCCCTCACCCCTGGGGCACTCCCATC
TGATCAAGCCTTATGTTGGAGAGATTCTCATCTTGGGTCGAATAGGATTT
TTGTCTACCGAGATTTCATGCGCATCCTTCAGGCTCACCTGTCTCGTTCT
GGGCACTCACACCGTCAATATGGGTCACACTCATTCAGACGTGGTGGGGC
CACTTTTGCATTAGAGGCTGGTGTCCCTCTTGACTCTATTGCAATCATGG
GTGATTGGAAGTCCGATGCGATGTATCTTTACTTACACATGCCCTTGAAG
CAG

Coding sequence (CDS) from alignment at scaffold_51:198943..199245

>TCONS_00069855 ID=TCONS_00069855|Name=TCONS_00069855|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_51:198943..199245 (Clytia hemisphaerica)
GTTTTGGCTGTTTCTCGTGCCTTCTCCCTCACCCCTGGGGCACTCCCATC
TGATCAAGCCTTATGTTGGAGAGATTCTCATCTTGGGTCGAATAGGATTT
TTGTCTACCGAGATTTCATGCGCATCCTTCAGGCTCACCTGTCTCGTTCT
GGGCACTCACACCGTCAATATGGGTCACACTCATTCAGACGTGGTGGGGC
CACTTTTGCATTAGAGGCTGGTGTCCCTCTTGACTCTATTGCAATCATGG
GTGATTGGAAGTCCGATGCGATGTATCTTTACTTACACATGCCCTTGAAG
CAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043504XLOC_043504Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069855-exon-scaffold_51-1491911889:198943..199245TCONS_00069855-exon-scaffold_51-1491911889:198943..199245Clytia hemisphaericaexon
TCONS_00069855-exon-scaffold_51-1510915933:198943..199245TCONS_00069855-exon-scaffold_51-1510915933:198943..199245Clytia hemisphaericaexon
TCONS_00069855-exon-scaffold_51-1575043694:198943..199245TCONS_00069855-exon-scaffold_51-1575043694:198943..199245Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069855-proteinTCONS_00069855-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_51supercontigscaffold_51:198943..199245 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.754099	1.78035	0.853829	0	12.2033	8.83963	5.33232	9.07646	8.57877	8.54507	6.69395	9.70526	6.66334	11.6505	1.28461	2.29763	0.566099	4.64187	0	2.51652	2.18732	0	0.864635	1.17912	15.3832	16.2582	0.517009	0.551766	0.418495	0.426381
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat
IPR011010DNA_brk_join_enz
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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