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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069847 ID=TCONS_00069847|Name=TCONS_00069847|organism=Clytia hemisphaerica|type=transcript|length=730bp
GTGATGCGTCACTATAAGCATACATCGTTGACTTTTTCACATCACCAATG
TTAGGTAAGTGGATCTGAGCAGTTGAATTTTGAAGCTTGCGAAGATACTT
GTTCGCTAACCGTATGTCATCTGTTGTACCATCTTTAACACGATTACTTA
AATCACACGACGCAAAAGCTAAATCAGGACGTGTTTGTTTTGACACCCAT
TGTTTCTGTCCAATTAAAGCTTTCAGTTGTAACTTTTCCTCTTGAGTAAG
ATTACGTTTTGATGTATCTCCCAATTCAATAGGTTGAAGTGTCTTAATGT
AGTCATTTTGTTGCATTGCTACAAACTCTCCTGTCTGGTTGATGTCCAAT
CCTAGGTACTGGAAAGTTGAAAACGATTCTTTGCTTAAATCAAATGATTT
CTGTACATGTGATACAATTTTCTCATGGAACAGGCGTGTTCCAGCATAGA
AGAAATCGTCGACATGACAACATAAAACACCTTGAAGCTTTCCTTTGTTT
CTCAAAAAGGATAACGCTTGGTCATATTTGCTTCTTGTGGCACCAGCTTT
AACCAGTTCCTCAGCAGCTTTAAGATACCACGAGCGAGGGGCATCATTTA
AACCGTAAACAGTACGTTTCAATTTCGATTTCGTCAAATGGCATGGACTT
ACTCGTAGAACACTTCCTCCGTGACGCACAACAACAACTTTTCCGTCAAT
TCCGATAATGGTACCTGGACCATGCCAGTC Run BLAST on NCBI protein sequence of TCONS_00069847-protein >TCONS_00069847-protein ID=TCONS_00069847-protein|Name=TCONS_00069847-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
DWHGPGTIIGIDGKVVVVRHGGSVLRVSPCHLTKSKLKRTVYGLNDAPRS
WYLKAAEELVKAGATRSKYDQALSFLRNKGKLQGVLCCHVDDFFYAGTRL
FHEKIVSHVQKSFDLSKESFSTFQYLGLDINQTGEFVAMQQNDYIKTLQP
IELGDTSKRNLTQEEKLQLKALIGQKQWVSKQTRPDLAFASCDLSNRVKD
GTTDDIRLANKYLRKLQNSTAQIHLPNIGDVKKSTMYAYSDAS Run BLAST on NCBI transcript from alignment at scaffold_51:52116..52845 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069847 ID=TCONS_00069847|Name=TCONS_00069847|organism=Clytia hemisphaerica|type=transcript|length=730bp|location=Sequence derived from alignment at scaffold_51:52116..52845 (Clytia hemisphaerica)
GACTGGCATGGTCCAGGTACCATTATCGGAATTGACGGAAAAGTTGTTGT
TGTGCGTCACGGAGGAAGTGTTCTACGAGTAAGTCCATGCCATTTGACGA
AATCGAAATTGAAACGTACTGTTTACGGTTTAAATGATGCCCCTCGCTCG
TGGTATCTTAAAGCTGCTGAGGAACTGGTTAAAGCTGGTGCCACAAGAAG
CAAATATGACCAAGCGTTATCCTTTTTGAGAAACAAAGGAAAGCTTCAAG
GTGTTTTATGTTGTCATGTCGACGATTTCTTCTATGCTGGAACACGCCTG
TTCCATGAGAAAATTGTATCACATGTACAGAAATCATTTGATTTAAGCAA
AGAATCGTTTTCAACTTTCCAGTACCTAGGATTGGACATCAACCAGACAG
GAGAGTTTGTAGCAATGCAACAAAATGACTACATTAAGACACTTCAACCT
ATTGAATTGGGAGATACATCAAAACGTAATCTTACTCAAGAGGAAAAGTT
ACAACTGAAAGCTTTAATTGGACAGAAACAATGGGTGTCAAAACAAACAC
GTCCTGATTTAGCTTTTGCGTCGTGTGATTTAAGTAATCGTGTTAAAGAT
GGTACAACAGATGACATACGGTTAGCGAACAAGTATCTTCGCAAGCTTCA
AAATTCAACTGCTCAGATCCACTTACCTAACATTGGTGATGTGAAAAAGT
CAACGATGTATGCTTATAGTGACGCATCAC Coding sequence (CDS) from alignment at scaffold_51:52116..52845 >TCONS_00069847 ID=TCONS_00069847|Name=TCONS_00069847|organism=Clytia hemisphaerica|type=CDS|length=729bp|location=Sequence derived from alignment at scaffold_51:52116..52845 (Clytia hemisphaerica)
GACTGGCATGGTCCAGGTACCATTATCGGAATTGACGGAAAAGTTGTTGT
TGTGCGTCACGGAGGAAGTGTTCTACGAGTAAGTCCATGCCATTTGACGA
AATCGAAATTGAAACGTACTGTTTACGGTTTAAATGATGCCCCTCGCTCG
TGGTATCTTAAAGCTGCTGAGGAACTGGTTAAAGCTGGTGCCACAAGAAG
CAAATATGACCAAGCGTTATCCTTTTTGAGAAACAAAGGAAAGCTTCAAG
GTGTTTTATGTTGTCATGTCGACGATTTCTTCTATGCTGGAACACGCCTG
TTCCATGAGAAAATTGTATCACATGTACAGAAATCATTTGATTTAAGCAA
AGAATCGTTTTCAACTTTCCAGTACCTAGGATTGGACATCAACCAGACAG
GAGAGTTTGTAGCAATGCAACAAAATGACTACATTAAGACACTTCAACCT
ATTGAATTGGGAGATACATCAAAACGTAATCTTACTCAAGAGGAAAAGTT
ACAACTGAAAGCTTTAATTGGACAGAAACAATGGGTGTCAAAACAAACAC
GTCCTGATTTAGCTTTTGCGTCGTGTGATTTAAGTAATCGTGTTAAAGAT
GGTACAACAGATGACATACGGTTAGCGAACAAGTATCTTCGCAAGCTTCA
AAATTCAACTGCTCAGATCCACTTACCTAACATTGGTGATGTGAAAAAGT
CAACGATGTATGCTTATAGTGACGCATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069847-exon-scaffold_51-1491911889:52116..52845 | TCONS_00069847-exon-scaffold_51-1491911889:52116..52845 | Clytia hemisphaerica | exon |
| TCONS_00069847-exon-scaffold_51-1510915933:52116..52845 | TCONS_00069847-exon-scaffold_51-1510915933:52116..52845 | Clytia hemisphaerica | exon |
| TCONS_00069847-exon-scaffold_51-1575043694:52116..52845 | TCONS_00069847-exon-scaffold_51-1575043694:52116..52845 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_51 | supercontig | scaffold_51:52116..52845 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013103 | RVT_2 |
Blast
The following BLAST results are available for this feature:
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