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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069843 ID=TCONS_00069843|Name=TCONS_00069843|organism=Clytia hemisphaerica|type=transcript|length=1402bp
AATCAACTTGGCGTTACGTACTCAAACGAGCATTCATCATTGAAGGACGA
GACATCGTGAAGATGGTACGTCGATCTTGTCAGCTCTGTCGTTACatctt
aaagaaaaaagtcgaAGTCGAAATGGGAAAGACATCTAACAGATCACTCA
CCATTGCACCTGCCTTCTACAACAGTCAAGTGGATTTGGCAGGACCATTT
CTGTCTTACACCAATCACAACAAACGCAAGACGATCAAAATCTGGCTAGT
CGTTTTCGTCTGCTCCACAACATCAACAACCTCAATCAAAGTAATGGACG
ATTACAGCAGCCCAGCTTTCTTCGAAGCATTCACACGCTTCGCCTGCGAC
ACTGGCTATCCGAAACCAGTATTCGTAGACCGTGGTTCGCAGATTCTCAA
AACCTACAACAACACAACGCTCAACTTCCACGACACAAAGTACAAGCTTC
ACTACCATGTTGATGTAGAATTCGAATTGTGTCCAGTCGATGGACATAAC
TACAATGGTAAAGTCGAACGACGAATTCGTGAAATCAAGCAATCACTGAC
GAAAAGTTATAACGATCAACGTTTATCTGTTCTCCAGTGGGAGACAGTTG
CATCAGAGATATCGAATTGTATCAACGACCTTCCAATCTCACTCGGTAAT
TATGTTTCTGATTTTGAATCAATGGACTTGATAACCCCGAATAGACTGAA
ACTTGGGCGCAATAACGAACGAAGTCCTGTAGGTTCATTTGAATTGTCCA
ATGACTCTTCAAGAATCATCCAAACCAACTCGTTAATCTATCAATCTTGG
TTTGATAGTTGGCTTATCAACCATGTGCCTAAACTCATCAATCAACCAAA
GTGGTTTAAGTCTGATACTGATAATCGTATAGGAGATGTTGTTTTGTTCT
TGAAAAATAGTCCATTGAAATTAACATACCAGTATGGTATGGTTGAAGAT
ACTGTTATGAGCAAGGATAACAAAATTCGTCAAGTTAAAGTATGTTATCG
AAATCACTCTGAGAACTGTAACAGGACTACCGTCCGACATGTTCGGGAGC
TAATTGTTATTCATTACGTTAATGAGAAGTTAATTATTGAACAATTGAAC
GATATGGCAGATCAATGCTAATTCAATTCATTCATAGAAAACACACACAC
CTTTCACTTAGGGTGACTTTTTGCATCTCAGTTGGGGCAGTGTTAGGAGC
ACGCGTCCCTAATGACTGCAAAAAGTCATCTCATTTTAATTACATACGTC
ATTTTATTTAAACgcacaaaacaattaaaaatatttattcatttcTTTGT
ATCATTTATATCATTTATACCTTAGGGATTTTTCTAGCATTTCAAAATTA
CATTCAGATTTTTTCGTAtcagttcaatttttcatgatcAATTAAGTGTC
TG Run BLAST on NCBI protein sequence of TCONS_00069843-protein >TCONS_00069843-protein ID=TCONS_00069843-protein|Name=TCONS_00069843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=372bp
STWRYVLKRAFIIEGRDIVKMVRRSCQLCRYILKKKVEVEMGKTSNRSLT
IAPAFYNSQVDLAGPFLSYTNHNKRKTIKIWLVVFVCSTTSTTSIKVMDD
YSSPAFFEAFTRFACDTGYPKPVFVDRGSQILKTYNNTTLNFHDTKYKLH
YHVDVEFELCPVDGHNYNGKVERRIREIKQSLTKSYNDQRLSVLQWETVA
SEISNCINDLPISLGNYVSDFESMDLITPNRLKLGRNNERSPVGSFELSN
DSSRIIQTNSLIYQSWFDSWLINHVPKLINQPKWFKSDTDNRIGDVVLFL
KNSPLKLTYQYGMVEDTVMSKDNKIRQVKVCYRNHSENCNRTTVRHVREL
IVIHYVNEKLIIEQLNDMADQC Run BLAST on NCBI transcript from alignment at scaffold_51:3556..4957 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069843 ID=TCONS_00069843|Name=TCONS_00069843|organism=Clytia hemisphaerica|type=transcript|length=1402bp|location=Sequence derived from alignment at scaffold_51:3556..4957 (Clytia hemisphaerica)
CAGACACTTAATTgatcatgaaaaattgaactgaTACGAAAAAATCTGAA
TGTAATTTTGAAATGCTAGAAAAATCCCTAAGGTATAAATGATATAAATG
ATACAAAgaaatgaataaatatttttaattgttttgtgcGTTTAAATAAA
ATGACGTATGTAATTAAAATGAGATGACTTTTTGCAGTCATTAGGGACGC
GTGCTCCTAACACTGCCCCAACTGAGATGCAAAAAGTCACCCTAAGTGAA
AGGTGTGTGTGTTTTCTATGAATGAATTGAATTAGCATTGATCTGCCATA
TCGTTCAATTGTTCAATAATTAACTTCTCATTAACGTAATGAATAACAAT
TAGCTCCCGAACATGTCGGACGGTAGTCCTGTTACAGTTCTCAGAGTGAT
TTCGATAACATACTTTAACTTGACGAATTTTGTTATCCTTGCTCATAACA
GTATCTTCAACCATACCATACTGGTATGTTAATTTCAATGGACTATTTTT
CAAGAACAAAACAACATCTCCTATACGATTATCAGTATCAGACTTAAACC
ACTTTGGTTGATTGATGAGTTTAGGCACATGGTTGATAAGCCAACTATCA
AACCAAGATTGATAGATTAACGAGTTGGTTTGGATGATTCTTGAAGAGTC
ATTGGACAATTCAAATGAACCTACAGGACTTCGTTCGTTATTGCGCCCAA
GTTTCAGTCTATTCGGGGTTATCAAGTCCATTGATTCAAAATCAGAAACA
TAATTACCGAGTGAGATTGGAAGGTCGTTGATACAATTCGATATCTCTGA
TGCAACTGTCTCCCACTGGAGAACAGATAAACGTTGATCGTTATAACTTT
TCGTCAGTGATTGCTTGATTTCACGAATTCGTCGTTCGACTTTACCATTG
TAGTTATGTCCATCGACTGGACACAATTCGAATTCTACATCAACATGGTA
GTGAAGCTTGTACTTTGTGTCGTGGAAGTTGAGCGTTGTGTTGTTGTAGG
TTTTGAGAATCTGCGAACCACGGTCTACGAATACTGGTTTCGGATAGCCA
GTGTCGCAGGCGAAGCGTGTGAATGCTTCGAAGAAAGCTGGGCTGCTGTA
ATCGTCCATTACTTTGATTGAGGTTGTTGATGTTGTGGAGCAGACGAAAA
CGACTAGCCAGATTTTGATCGTCTTGCGTTTGTTGTGATTGGTGTAAGAC
AGAAATGGTCCTGCCAAATCCACTTGACTGTTGTAGAAGGCAGGTGCAAT
GGTGAGTGATCTGTTAGATGTCTTTCCCATTTCGACTtcgacttttttct
ttaagatGTAACGACAGAGCTGACAAGATCGACGTACCATCTTCACGATG
TCTCGTCCTTCAATGATGAATGCTCGTTTGAGTACGTAACGCCAAGTTGA
TT Coding sequence (CDS) from alignment at scaffold_51:3556..4957 >TCONS_00069843 ID=TCONS_00069843|Name=TCONS_00069843|organism=Clytia hemisphaerica|type=CDS|length=1119bp|location=Sequence derived from alignment at scaffold_51:3556..4957 (Clytia hemisphaerica)
TTAGCATTGATCTGCCATATCGTTCAATTGTTCAATAATTAACTTCTCAT
TAACGTAATGAATAACAATTAGCTCCCGAACATGTCGGACGGTAGTCCTG
TTACAGTTCTCAGAGTGATTTCGATAACATACTTTAACTTGACGAATTTT
GTTATCCTTGCTCATAACAGTATCTTCAACCATACCATACTGGTATGTTA
ATTTCAATGGACTATTTTTCAAGAACAAAACAACATCTCCTATACGATTA
TCAGTATCAGACTTAAACCACTTTGGTTGATTGATGAGTTTAGGCACATG
GTTGATAAGCCAACTATCAAACCAAGATTGATAGATTAACGAGTTGGTTT
GGATGATTCTTGAAGAGTCATTGGACAATTCAAATGAACCTACAGGACTT
CGTTCGTTATTGCGCCCAAGTTTCAGTCTATTCGGGGTTATCAAGTCCAT
TGATTCAAAATCAGAAACATAATTACCGAGTGAGATTGGAAGGTCGTTGA
TACAATTCGATATCTCTGATGCAACTGTCTCCCACTGGAGAACAGATAAA
CGTTGATCGTTATAACTTTTCGTCAGTGATTGCTTGATTTCACGAATTCG
TCGTTCGACTTTACCATTGTAGTTATGTCCATCGACTGGACACAATTCGA
ATTCTACATCAACATGGTAGTGAAGCTTGTACTTTGTGTCGTGGAAGTTG
AGCGTTGTGTTGTTGTAGGTTTTGAGAATCTGCGAACCACGGTCTACGAA
TACTGGTTTCGGATAGCCAGTGTCGCAGGCGAAGCGTGTGAATGCTTCGA
AGAAAGCTGGGCTGCTGTAATCGTCCATTACTTTGATTGAGGTTGTTGAT
GTTGTGGAGCAGACGAAAACGACTAGCCAGATTTTGATCGTCTTGCGTTT
GTTGTGATTGGTGTAAGACAGAAATGGTCCTGCCAAATCCACTTGACTGT
TGTAGAAGGCAGGTGCAATGGTGAGTGATCTGTTAGATGTCTTTCCCATT
TCGACTtcgacttttttctttaagatGTAACGACAGAGCTGACAAGATCG
ACGTACCATCTTCACGATGTCTCGTCCTTCAATGATGAATGCTCGTTTGA
GTACGTAACGCCAAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069843-exon-scaffold_51-1491911889:3556..4957 | TCONS_00069843-exon-scaffold_51-1491911889:3556..4957 | Clytia hemisphaerica | exon |
| TCONS_00069843-exon-scaffold_51-1510915933:3556..4957 | TCONS_00069843-exon-scaffold_51-1510915933:3556..4957 | Clytia hemisphaerica | exon |
| TCONS_00069843-exon-scaffold_51-1575043694:3556..4957 | TCONS_00069843-exon-scaffold_51-1575043694:3556..4957 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_51 | supercontig | scaffold_51:3556..4957 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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