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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069842 ID=TCONS_00069842|Name=TCONS_00069842|organism=Clytia hemisphaerica|type=transcript|length=1810bp
CTGCATGCAACTGAGAGCTGATTGTTTGAATGGATATTaaagtgaattaa
aatgaagatttcaaACCTTTGTAAGGATGTTATTAAATTGATTGTGAACA
AGGGCGACGTTTTACGCTCAAAATAGTTTGTAGATTTGGACCAATATGTT
TGTGAGCTAAATCAACAAGTTAATAATTATCAAGATGAGGCAAATCACAA
ACAAAAGGATTTGGCATTATTGCCAAACATTCTATTTTTTGACCCTTTTG
AGCAACTCAAAGACTCTGAATTTTTTTACTTCATATTGCAAAGAAGATAC
TGGGAAAAATGTACCATTAGACCCATCACTAGGAACAGAATGGGAATATG
GTGAATCATCAGGCAAAGAACCTAGATTGACTTGGGACATATTTTGGTAT
TGTGCTCTAGTTGGTAAGGTAACCAAGTGTTGTAGTGGGCATTCAATTAC
ATCGTATCACCCTGGAATTTTGCAACAAATTTCAAACTACCCATTCTTAC
TTTCTCACAAGCGTGGAATGACTAAGTCAACATTTGACCTGATAATCCGT
TTAGTTGAACAAGGCAACAATTTTAGCAGCATTGAAAGTATATTTCTTAG
CAGTATCGTCGATATCGTCCATCGAAAACTAGCTCTAATCAACAACACCA
ACATGCAGACATCTATTGAATTCATTGAACAACTGAAGCTGTTTACTCCA
TCACATGATTTTATCActtcttgttttgttttcaattttgataactACAA
AGATGTTTATCTTTCTGAAATGGATAAACTCACCTTCATTTGGCTTTCAG
GAGACCACACGTTTCGTGTGGCTGCGAATATAGGTAAGTAgcaaaagtta
caaagaaagggGTAGCATTTTCACattgggggatgccaagaaggggggta
CGGAAAAGTGGTTTGTCGGTTTCAGCCTTATTTTTGTCGGTTATCGGTGA
ACGGAAAACATTACGGTGTCGGTGATTGAGCTTTTTTGATCGGTTAATCG
GTGAGTGGATCGATATTCAAGCGGTTTTCGGTGACAAGTTAAGTATAATG
GTTTTGGAGAAATAAATTATCCCAAGAATCAAAAAGTAAATTAACTACTA
catgtaatttttctttgctcgcttcgcttgcATAAAATACTGTATCAGTG
ACCAATTGAGTCTTTCAGATTTCAAGAGTGCATAAATGACCTTTGTTACA
GGAAAACTTGGAATAATTCTGCTAGATTTAGTAGCAGTATTGGGGAACTG
CCAGCGGCGGCTGATTTTTCTATGGAGGGGGACAAGGGGCACCAAAAGGC
GCCTCTGACATAGGGTCCACCCCCCAGagatttgggggtacctaaaaaaa
aaaattctaaacttTAAGGGGTACCTGGAAGTATTCCCAAATTTAGGGGG
TATCTGATATATTTGGGGGTACCTGTAATCTCGTAAGTGGGGGCGGGGGC
TGTTCTTTCTGTATGAAGTATTTTCCTTGACTcaaccaattttccaattt
tcaatcAAACTTTTCATTGAGAAGACTTTATAACTTATGTCTTTCCCTTT
TCATCCAGTTTTCTTCTCTTACATTGACAAATGAGCAGAAAATCCTTTAT
ATTGCATTTAACAATAAAAAAGGGGGTAACTCAAAGTTGGGGGGCTAAgt
ttagaattctaaaaattttgggggtaccAAAATGATTGGGGGTACCTGAA
CCCTGGAGGACCCTATGTCTGATTGctaattttggcgcccctttgCTGTT
ATAAACCCTAAAATTAgcagttttcagccaaaaagaggaaaaatatccaa
aaatttcgCT Run BLAST on NCBI transcript from alignment at scaffold_51:129880..131689- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069842 ID=TCONS_00069842|Name=TCONS_00069842|organism=Clytia hemisphaerica|type=transcript|length=1810bp|location=Sequence derived from alignment at scaffold_51:129880..131689- (Clytia hemisphaerica)
CTGCATGCAACTGAGAGCTGATTGTTTGAATGGATATTAAAGTGAATTAA
AATGAAGATTTCAAACCTTTGTAAGGATGTTATTAAATTGATTGTGAACA
AGGGCGACGTTTTACGCTCAAAATAGTTTGTAGATTTGGACCAATATGTT
TGTGAGCTAAATCAACAAGTTAATAATTATCAAGATGAGGCAAATCACAA
ACAAAAGGATTTGGCATTATTGCCAAACATTCTATTTTTTGACCCTTTTG
AGCAACTCAAAGACTCTGAATTTTTTTACTTCATATTGCAAAGAAGATAC
TGGGAAAAATGTACCATTAGACCCATCACTAGGAACAGAATGGGAATATG
GTGAATCATCAGGCAAAGAACCTAGATTGACTTGGGACATATTTTGGTAT
TGTGCTCTAGTTGGTAAGGTAACCAAGTGTTGTAGTGGGCATTCAATTAC
ATCGTATCACCCTGGAATTTTGCAACAAATTTCAAACTACCCATTCTTAC
TTTCTCACAAGCGTGGAATGACTAAGTCAACATTTGACCTGATAATCCGT
TTAGTTGAACAAGGCAACAATTTTAGCAGCATTGAAAGTATATTTCTTAG
CAGTATCGTCGATATCGTCCATCGAAAACTAGCTCTAATCAACAACACCA
ACATGCAGACATCTATTGAATTCATTGAACAACTGAAGCTGTTTACTCCA
TCACATGATTTTATCACTTCTTGTTTTGTTTTCAATTTTGATAACTACAA
AGATGTTTATCTTTCTGAAATGGATAAACTCACCTTCATTTGGCTTTCAG
GAGACCACACGTTTCGTGTGGCTGCGAATATAGGTAAGTAGCAAAAGTTA
CAAAGAAAGGGGTAGCATTTTCACATTGGGGGATGCCAAGAAGGGGGGTA
CGGAAAAGTGGTTTGTCGGTTTCAGCCTTATTTTTGTCGGTTATCGGTGA
ACGGAAAACATTACGGTGTCGGTGATTGAGCTTTTTTGATCGGTTAATCG
GTGAGTGGATCGATATTCAAGCGGTTTTCGGTGACAAGTTAAGTATAATG
GTTTTGGAGAAATAAATTATCCCAAGAATCAAAAAGTAAATTAACTACTA
CATGTAATTTTTCTTTGCTCGCTTCGCTTGCATAAAATACTGTATCAGTG
ACCAATTGAGTCTTTCAGATTTCAAGAGTGCATAAATGACCTTTGTTACA
GGAAAACTTGGAATAATTCTGCTAGATTTAGTAGCAGTATTGGGGAACTG
CCAGCGGCGGCTGATTTTTCTATGGAGGGGGACAAGGGGCACCAAAAGGC
GCCTCTGACATAGGGTCCACCCCCCAGAGATTTGGGGGTACCTAAAAAAA
AAAATTCTAAACTTTAAGGGGTACCTGGAAGTATTCCCAAATTTAGGGGG
TATCTGATATATTTGGGGGTACCTGTAATCTCGTAAGTGGGGGCGGGGGC
TGTTCTTTCTGTATGAAGTATTTTCCTTGACTCAACCAATTTTCCAATTT
TCAATCAAACTTTTCATTGAGAAGACTTTATAACTTATGTCTTTCCCTTT
TCATCCAGTTTTCTTCTCTTACATTGACAAATGAGCAGAAAATCCTTTAT
ATTGCATTTAACAATAAAAAAGGGGGTAACTCAAAGTTGGGGGGCTAAGT
TTAGAATTCTAAAAATTTTGGGGGTACCAAAATGATTGGGGGTACCTGAA
CCCTGGAGGACCCTATGTCTGATTGCTAATTTTGGCGCCCCTTTGCTGTT
ATAAACCCTAAAATTAGCAGTTTTCAGCCAAAAAGAGGAAAAATATCCAA
AAATTTCGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069842-exon-scaffold_51-1575043694:129880..131689 | TCONS_00069842-exon-scaffold_51-1575043694:129880..131689 | Clytia hemisphaerica | exon |
| TCONS_00069842-exon-scaffold_51-1510915933:129880..131689 | TCONS_00069842-exon-scaffold_51-1510915933:129880..131689 | Clytia hemisphaerica | exon |
| TCONS_00069842-exon-scaffold_51-1491911889:129880..131689 | TCONS_00069842-exon-scaffold_51-1491911889:129880..131689 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_51 | supercontig | scaffold_51:129880..131689 - |
Blast
The following BLAST results are available for this feature:
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