TCONS_00069827 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069827
Unique NameTCONS_00069827
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length529

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069827 ID=TCONS_00069827|Name=TCONS_00069827|organism=Clytia hemisphaerica|type=transcript|length=529bp
ATATTTCTTGCCTTCCTCAATCAGTAGCTCCCACCATAACTTTAAATCTG
AAAGTTTTCCAGCACCTGTAATATCATCAGCAAGAGAAAcgtttttcact
ttctttattttgtcCCTCAGAAAATTGATAATGGGAGTGATACCCAGGGC
ATAAAATGACATTGCAAGATTGTCGCCTTGAGTCGTCCCCTCAACTGACA
GAATATCTCTACTTCCAAGCACGATCATGCGAACTGATACTCGATACATA
TTTGTTAATATACATGAGAATTGGGGACACATTATCCTGATATTATGCAA
TGCTGCTTTCCTATTTAGTGAATTAAACGCATTACTGGCATCAACAAGAA
TTATAGCTTCAGTCTCATCTGAATCGAAGATCTCTTTCATTGCGTGTATA
GCTGCTTCAGCACCTGATTGAAGACCTGTTGCAACTTGAAGTGGACCAGC
GCTGGTTTGgatatcatttttcaaaacccATCCGATACATTTCCCAACTA
CTCTTCTAAGTATCTCTCCTACTCCTATG
Run BLAST on NCBI

protein sequence of TCONS_00069827-protein

>TCONS_00069827-protein ID=TCONS_00069827-protein|Name=TCONS_00069827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
IGVGEILRRVVGKCIGWVLKNDIQTSAGPLQVATGLQSGAEAAIHAMKEI
FDSDETEAIILVDASNAFNSLNRKAALHNIRIMCPQFSCILTNMYRVSVR
MIVLGSRDILSVEGTTQGDNLAMSFYALGITPIINFLRDKIKKVKNVSLA
DDITGAGKLSDLKLWWELLIEEGKKY
Run BLAST on NCBI

transcript from alignment at scaffold_509:29732..30260

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069827 ID=TCONS_00069827|Name=TCONS_00069827|organism=Clytia hemisphaerica|type=transcript|length=529bp|location=Sequence derived from alignment at scaffold_509:29732..30260 (Clytia hemisphaerica)
CATAGGAGTAGGAGAGATACTTAGAAGAGTAGTTGGGAAATGTATCGGAT
gggttttgaaaaatgatatcCAAACCAGCGCTGGTCCACTTCAAGTTGCA
ACAGGTCTTCAATCAGGTGCTGAAGCAGCTATACACGCAATGAAAGAGAT
CTTCGATTCAGATGAGACTGAAGCTATAATTCTTGTTGATGCCAGTAATG
CGTTTAATTCACTAAATAGGAAAGCAGCATTGCATAATATCAGGATAATG
TGTCCCCAATTCTCATGTATATTAACAAATATGTATCGAGTATCAGTTCG
CATGATCGTGCTTGGAAGTAGAGATATTCTGTCAGTTGAGGGGACGACTC
AAGGCGACAATCTTGCAATGTCATTTTATGCCCTGGGTATCACTCCCATT
ATCAATTTTCTGAGGgacaaaataaagaaagtgaaaaacgTTTCTCTTGC
TGATGATATTACAGGTGCTGGAAAACTTTCAGATTTAAAGTTATGGTGGG
AGCTACTGATTGAGGAAGGCAAGAAATAT

Coding sequence (CDS) from alignment at scaffold_509:29732..30260

>TCONS_00069827 ID=TCONS_00069827|Name=TCONS_00069827|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at scaffold_509:29732..30260 (Clytia hemisphaerica)
ATAGGAGTAGGAGAGATACTTAGAAGAGTAGTTGGGAAATGTATCGGATg
ggttttgaaaaatgatatcCAAACCAGCGCTGGTCCACTTCAAGTTGCAA
CAGGTCTTCAATCAGGTGCTGAAGCAGCTATACACGCAATGAAAGAGATC
TTCGATTCAGATGAGACTGAAGCTATAATTCTTGTTGATGCCAGTAATGC
GTTTAATTCACTAAATAGGAAAGCAGCATTGCATAATATCAGGATAATGT
GTCCCCAATTCTCATGTATATTAACAAATATGTATCGAGTATCAGTTCGC
ATGATCGTGCTTGGAAGTAGAGATATTCTGTCAGTTGAGGGGACGACTCA
AGGCGACAATCTTGCAATGTCATTTTATGCCCTGGGTATCACTCCCATTA
TCAATTTTCTGAGGgacaaaataaagaaagtgaaaaacgTTTCTCTTGCT
GATGATATTACAGGTGCTGGAAAACTTTCAGATTTAAAGTTATGGTGGGA
GCTACTGATTGAGGAAGGCAAGAAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043481XLOC_043481Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069827-exon-scaffold_509-1491911889:29732..30260TCONS_00069827-exon-scaffold_509-1491911889:29732..30260Clytia hemisphaericaexon
TCONS_00069827-exon-scaffold_509-1510915933:29732..30260TCONS_00069827-exon-scaffold_509-1510915933:29732..30260Clytia hemisphaericaexon
TCONS_00069827-exon-scaffold_509-1575043694:29732..30260TCONS_00069827-exon-scaffold_509-1575043694:29732..30260Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069827-proteinTCONS_00069827-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_509supercontigscaffold_509:29732..30260 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.65815	2.3588	3.13612	1.98775	0.524598	0.429031	0.377182	1.00438	0.423309	0.647056	0	0.58271	0.335645	0	0.188863	0.434976	0.385702	0.455669	0.492473	0.991168	0.346644	0.441405	0.254238	0.302889	0	0.258924	0.728345	1.08173	0.796246	0.302973
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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