Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069825 ID=TCONS_00069825|Name=TCONS_00069825|organism=Clytia hemisphaerica|type=transcript|length=1875bpRun BLAST on NCBI protein sequence of TCONS_00069825-protein >TCONS_00069825-protein ID=TCONS_00069825-protein|Name=TCONS_00069825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=528bp MKEMDVQFERQVSCTHSDPNKIAVIEFHQCKTCPEVLYSFNKSSLNVTFQRun BLAST on NCBI transcript from alignment at scaffold_509:14278..16152 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069825 ID=TCONS_00069825|Name=TCONS_00069825|organism=Clytia hemisphaerica|type=transcript|length=1875bp|location=Sequence derived from alignment at scaffold_509:14278..16152 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_509:14278..16152 >TCONS_00069825 ID=TCONS_00069825|Name=TCONS_00069825|organism=Clytia hemisphaerica|type=CDS|length=1587bp|location=Sequence derived from alignment at scaffold_509:14278..16152 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069825 vs. Swiss-Prot (Human)
Match: ZN345 (Zinc finger protein 345 OS=Homo sapiens GN=ZNF345 PE=2 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 7.990e-73 Identity = 138/332 (41.57%), Postives = 187/332 (56.33%), Query Frame = -3 Query: 242 FISNSKLTCHIRVHTGEKPFRCEVCGKDFRGKSSLTKHFLTHTGEKNHVCDVCGKSFSVTSNLKRHYITHTGEKSLSCKICGESFKYPYNLKQHSRVHTGET-HECDKCETSFIDRKSLNKHRKIHRPSKEPPSYECTVCGKKYRAPSLLARHMGIHTGERPHECQVCGKTYGFPSELEKHKRTHTGEKPFICEVCGKGFNDKRNRDRHQRNVHKGSDKPPLHCDTCGEAFTDLASLADHSKNHEGDDVSKCAVCGKTFTEASELVNHYQLH--------KKLXXXXXXXXXXXXENVSDAPPEVHECAVCGKTFSESRDLVKHYQLHRANK 1210 F S + L H R+HTGEKPF C+ CGK F S+LT H HTGEK + C CGK+FS S L RH I H+GEK CK CG+SF + L +H R+HTGE +EC C +F +L +HR+IH + E P YEC CG + + S L RH IHTGE+P+ C CGK + F S L +H+R HTGEKP++C+ CGK FN + +HQR +H G + P C C +AF + L H + H G+ +C CGKTF+ S+L H+++H K+ S + + +EC CGK+FS L +H ++H K Sbjct: 99 FGSGANLAYHQRIHTGEKPFECKECGKAFGSGSNLTHHQRIHTGEKPYECKECGKAFSFGSGLIRHQIIHSGEKPYECKECGKSFSFESALIRHHRIHTGEKPYECIDCGKAFGSGSNLTQHRRIH--TGEKP-YECKACGMAFSSGSALTRHQRIHTGEKPYICNECGKAFSFGSALTRHQRIHTGEKPYVCKECGKAFNSGSDLTQHQR-IHTG--EKPYECKECEKAFRSGSKLIQHQRMHTGEKPYECKECGKTFSSGSDLTQHHRIHTGEKPYECKECGKAFGSGSKLIQHQLIHTGERPYECKECGKSFSSGSALNRHQRIHTGEK 424 HSP 2 Score: 228.794 bits (582), Expect = 1.155e-66 Identity = 123/272 (45.22%), Postives = 169/272 (62.13%), Query Frame = -3 Query: 398 FISNSKLTCHIRVHTGEKPFRCEVCGKDFRGKSSLTKHFLTHTGEKNHVCDVCGKSFSVTSNLKRHYITHTGEKSLSCKICGESFKYPYNLKQHSRVHTGET-HECDKCETSFIDRKSLNKHRKIHRPSKEPPSYECTVCGKKYRAPSLLARHMGIHTGERPHECQVCGKTYGFPSELEKHKRTHTGEKPFICEVCGKGFNDKRNRDRHQRNVHKGSDKPPLHCDTCGEAFTDLASLADHSKNHEGDDVSKCAVCGKTFTEASELVNHYQLH 1210 F S S LT H R+HTGEKP+ C+ CG F S+LT+H HTGEK ++C+ CGK+FS S L RH HTGEK CK CG++F +L QH R+HTGE +EC +CE +F L +H+++H + E P YEC CGK + + S L +H IHTGE+P+EC+ CGK +G S+L +H+ HTGE+P+ C+ CGK F+ +RHQR +H G + P C CG+AF +SL H + H G+ + +C CGK + SE H + H Sbjct: 211 FGSGSNLTQHRRIHTGEKPYECKACGMAFSSGSALTRHQRIHTGEKPYICNECGKAFSFGSALTRHQRIHTGEKPYVCKECGKAFNSGSDLTQHQRIHTGEKPYECKECEKAFRSGSKLIQHQRMH--TGEKP-YECKECGKTFSSGSDLTQHHRIHTGEKPYECKECGKAFGSGSKLIQHQLIHTGERPYECKECGKSFSSGSALNRHQR-IHTG--EKPYECKECGKAFYSGSSLTQHQRIHTGEKLYECKNCGKAYGRDSEFQQHKKSH 476 HSP 3 Score: 225.328 bits (573), Expect = 1.861e-65 Identity = 134/326 (41.10%), Postives = 178/326 (54.60%), Query Frame = -3 Query: 242 HIRVHTGEKPFRCEVCGKDFRGKSSLTKHFLTHTGEKNHVCDVCGKSFSVTSNLKRHYITHTGEKSLSCKICGESFKYPYNLKQHSRVHTGET-HECDKCETSFIDRKSLNKHRKIHRPSKEPPSYECTVCGKKYRAPSLLARHMGIHTGERPHECQVCGKTYGFPSELEKHKRTHTGEKPFICEVCGKGFNDKRNRDRHQRNVHKGSDKPPLHCDTCGEAFTDLASLADHSKNHEGDDVSKCAVCGKTFTEASELVNHYQLH-----------KKLXXXXXXXXXXXXENVSDAPPEVHECAVCGKTFSESRDLVKHYQLHRANK 1183 H R+HT EK C+ CGKDF S L +H HTGEK + C CGK+F +NL H HTGEK CK CG++F NL H R+HTGE +EC +C +F L +H+ IH S E P YEC CGK + S L RH IHTGE+P+EC CGK +G S L +H+R HTGEKP+ C+ CG F+ RHQR +H G +KP + C+ CG+AF+ ++L H + H G+ C CGK F S+L H ++H +K + + P +EC CGKTFS DL +H+++H K Sbjct: 52 HQRIHTDEKLLECKECGKDFSFVSVLVRHQRIHTGEKPYECKECGKAFGSGANLAYHQRIHTGEKPFECKECGKAFGSGSNLTHHQRIHTGEKPYECKECGKAFSFGSGLIRHQIIH--SGEKP-YECKECGKSFSFESALIRHHRIHTGEKPYECIDCGKAFGSGSNLTQHRRIHTGEKPYECKACGMAFSSGSALTRHQR-IHTG-EKPYI-CNECGKAFSFGSALTRHQRIHTGEKPYVCKECGKAFNSGSDLTQHQRIHTGEKPYECKECEKAFRSGSKLIQHQRMHTGEKP---YECKECGKTFSSGSDLTQHHRIHTGEK 368 HSP 4 Score: 187.963 bits (476), Expect = 6.414e-52 Identity = 115/288 (39.93%), Postives = 151/288 (52.43%), Query Frame = -3 Query: 242 KHFLTHTGEKNHVCDVCGKSFSVTSNLKRHYITHTGEKSLSCKICGESFKYPYNLKQHSRVHTGET-HECDKCETSFIDRKSLNKHRKIHRPSKEPPSYECTVCGKKYRAPSLLARHMGIHTGERPHECQVCGKTYGFPSELEKHKRTHTGEKPFICEVCGKGFNDKRNRDRHQRNVHKGSDKPPLHCDTCGEAFTDLASLADHSKNHEGDDVSKCAVCGKTFTEASELVNHYQLHKKLXXXXXXXXXXXXENVSDAPPEVHECAVCGKTFSESRDLVKHYQLHRANK 1102 +H HT EK C CGK FS S L RH HTGEK CK CG++F NL H R+HTGE EC +C +F +L H++IH + E P YEC CGK + S L RH IH+GE+P+EC+ CGK++ F S L +H R HTGEKP+ C CGK F N +H+R +H G + P C CG AF+ ++L H + H G+ C CGK F+ S L H ++H + P V C CGK F+ DL +H ++H K Sbjct: 51 QHQRIHTDEKLLECKECGKDFSFVSVLVRHQRIHTGEKPYECKECGKAFGSGANLAYHQRIHTGEKPFECKECGKAFGSGSNLTHHQRIH--TGEKP-YECKECGKAFSFGSGLIRHQIIHSGEKPYECKECGKSFSFESALIRHHRIHTGEKPYECIDCGKAFGSGSNLTQHRR-IHTG--EKPYECKACGMAFSSGSALTRHQRIHTGEKPYICNECGKAFSFGSALTRHQRIH------------------TGEKPYV--CKECGKAFNSGSDLTQHQRIHTGEK 312 HSP 5 Score: 138.272 bits (347), Expect = 5.409e-35 Identity = 86/235 (36.60%), Postives = 121/235 (51.49%), Query Frame = -3 Query: 233 QHSRVHTGE-THECDKCETSFIDRKSLNKHRKIHRPSKEPPSYECTVCGKKYRAPSLLARHMGIHTGERPHECQVCGKTYGFPSELEKHKRTHTGEKPFICEVCGKGFNDKRNRDRHQRNVHKGSDKPPLHCDTCGEAFTDLASLADHSKNHEGDDVSKCAVCGKTFTEASELVNHYQLHKKLXXXXXXXXXXXXENVSDAPPEVHECAVCGKTFSESRDLVKHYQLHRANK*FL 934 QH R+HT E EC +C F L +H++IH + E P YEC CGK + + + LA H IHTGE+P EC+ CGK +G S L H+R HTGEKP+ C+ CGK F+ RHQ +H G + P C CG++F+ ++L H + H G+ +C CGK F S L H ++H + P +EC CG FS L +H ++H K ++ Sbjct: 51 QHQRIHTDEKLLECKECGKDFSFVSVLVRHQRIH--TGEKP-YECKECGKAFGSGANLAYHQRIHTGEKPFECKECGKAFGSGSNLTHHQRIHTGEKPYECKECGKAFSFGSGLIRHQ-IIHSG--EKPYECKECGKSFSFESALIRHHRIHTGEKPYECIDCGKAFGSGSNLTQHRRIH-----------------TGEKP---YECKACGMAFSSGSALTRHQRIHTGEKPYI 259 HSP 6 Score: 110.538 bits (275), Expect = 1.266e-25 Identity = 65/178 (36.52%), Postives = 92/178 (51.69%), Query Frame = -3 Query: 242 PSLLARHMGIHTGERPHECQVCGKTYGFPSELEKHKRTHTGEKPFICEVCGKGFNDKRNRDRHQRNVHKGSDKPPLHCDTCGEAFTDLASLADHSKNHEGDDVSKCAVCGKTFTEASELVNHYQLHKKLXXXXXXXXXXXXENVSDAPPEVHECAVCGKTFSESRDLVKHYQLHRANK 775 P+ +H IHT E+ EC+ CGK + F S L +H+R HTGEKP+ C+ CGK F N HQR +H G + P C CG+AF ++L H + H G+ +C CGK F+ S L+ H +H S P +EC CGK+FS L++H+++H K Sbjct: 46 PTFSIQHQRIHTDEKLLECKECGKDFSFVSVLVRHQRIHTGEKPYECKECGKAFGSGANLAYHQR-IHTG--EKPFECKECGKAFGSGSNLTHHQRIHTGEKPYECKECGKAFSFGSGLIRHQIIH------------------SGEKP--YECKECGKSFSFESALIRHHRIHTGEK 200 The following BLAST results are available for this feature:
BLAST of TCONS_00069825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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