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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069817 ID=TCONS_00069817|Name=TCONS_00069817|organism=Clytia hemisphaerica|type=transcript|length=1046bp
tcagggtattcaaaaaaataacaatgtaATACTGAATCGAAATCAAAGCA
ACGGattaaaaaattatgaataaTTTAGATGGAATAttttttgctgatgt
cagcacgGGAAGGTATAAAATGGGCATGGGATGAGACGGATGAGACATTT
CAAACACAGACGACATCGAGCGCTTGTTAGGTATTGACTCAAGATGATTG
GAGCTACTCAATCAACAATTTTGACACGATCATTCAACCTTCGAATGATC
TTAATCACATCTATTTTGACAATCGGTCTATTCACCGAGATATCCGTCGC
TAAACCGACAACAATAAACACCGACGAAGATTTAACGACGGCTTTATATC
AAACCGATATCGGCCGACAAATGATTCGTCGACGCCAACGACGTAGCATA
GAAGCGTGTTATGCTGAATGTAAAACGTCAGAGAAAATTTGTTACGATAA
TGTAGAAAATGACTCATTCCAGGAGACCCTTGTGTGCATGCAAGCCACAG
ATGGCTGTAAAAATGATTGCGACGCTTTGGCTGGCAAAAGAAGGAGAAAA
CGTTTCGTAGATGCATTGAAAAGTTTACACAGTCACCACTTGACGCTAGA
TTCTGAAATGCAATAATTGCTTACGTCATCATAtttgaactttttagaaa
tatatttttttgtatattgCGGCATTGTTATCCGAAACTTTTTAAAACGT
TGATCCGGGctaatatgaaaataatttcatgGGTGCCCACGCCCTTTGAA
CGCCTTTACCACCTTAAGTAATTTGGAATTTCTGCAGTGCTAAGCCATAA
TTTTCTAAGTTGAATGAAATTTACTCAGGCTGTGGCTTTGAGAAGAAAAA
TTGTTTCATTCAATTTCAATATACAATTTCAATATATTTGAAAATCTGAA
TTATtctaaaatatatttatttatagacaaaaaattattaattaatttat
gaaaatatatttatagttttgttaaaaatatttctagaaaaagtaaaaat
cctttgtaaaaaatatatacagtcactctgacctgaaaGAAGAACT Run BLAST on NCBI protein sequence of TCONS_00069817-protein >TCONS_00069817-protein ID=TCONS_00069817-protein|Name=TCONS_00069817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MIGATQSTILTRSFNLRMILITSILTIGLFTEISVAKPTTINTDEDLTTA
LYQTDIGRQMIRRRQRRSIEACYAECKTSEKICYDNVENDSFQETLVCMQ
ATDGCKNDCDALAGKRRRKRFVDALKSLHSHHLTLDSEMQ Run BLAST on NCBI transcript from alignment at scaffold_509:35073..40518+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069817 ID=TCONS_00069817|Name=TCONS_00069817|organism=Clytia hemisphaerica|type=transcript|length=5446bp|location=Sequence derived from alignment at scaffold_509:35073..40518+ (Clytia hemisphaerica)
tcagggtattcaaaaaaataacaatgtaATACTGAATCGAAATCAAAGCA
ACGGattaaaaaattatgaataaTTTAGATGGAATAttttttgctgatgt
cagcacgGGAAGGTATAAAATGGGCATGGGATGAGACGGATGAGACATTT
CAAACACAGACGACATCGAGCGCTTGTTAGGTGAGGTAGTTTCCATACCC
CACGCAACTTTCGCTGACGATAACAACAAATATTCTTGCAAATCTATTGG
AGAATATTTAAAACAGCATTCAACCGCAACATTTTGATGACTTTTCGCAT
CGACtttgtttcaatttcacaatAAAAAAGTAAGTTTTCTCATTTCTTTT
TACTGTTTTCTCGGAACATaaaatctaattcaaattcaaattataatctt
aacggaactaatttttgcgagaaCCGATTTTCGCGGAAGTTATTTTCGCG
TGAGGATACTAAATTGGCGAAttttgcggaactaattttcaagccaaaaa
acgcgaaaattaattctgcgaaaattagttcccgccaaaattagtccCCT
TTAAGGTATAAAACGTGAATCGAGgggcaaaaaataataaacagtTTTTG
CATGAACTTATCTTTGCGAGCagcaattttttaattcaaatccCTCAAGA
TTCAAGTACAAAAATTCATTATAAATCCGATACATCTTAGAATATTTATT
CCGgtttaccttattggaactaattttcacgggaaCTATTATAGtccgcg
gtcgaaaaaaaaaaatcggaaatttttttcaaatttttcgataaaattgg
aaaaaaatgtatttCACGGGTTCAAAAACGCTAAAATCAatttccgcgaa
aattagttccagtaAGGTATTTGTCAGGTGCTATTGCACCCACATCGAAT
CAAATGGTCACAGTATAGGGTAAAATCGAGCTTGAAAAGTCTGTTgattg
ttcaatttttttgaggGGATGAATTTAGACGTTCCAGTCAGTAATTTCTA
ACTTCACTTTGTGGACTTTTATTGGAACAAACCTTACTATTCcttttttt
cctttgaaatgTCCTCTTGTTTTTCATCCGATAGGTATTTCTCCCCTTTC
ACATACATGATTTGAACCTAAAACCAAATTTGGCACCTTTTGGCACCTTT
TGGCACTGTTCGGCTTTAAAGAAAGGAGAGGTGAAATGGTAGAAATAATT
AAAGTTGCCATCATAATTTGACCAGTTTTATAGTATTTCGCCGTAAACAT
TTTCTGCAAATGAATGTACTCCGCCAAAGCTTAACAACCTTTGGGAAGTT
CAAGGAAATGTTAGAAAAAGAAAGAGTGGTATTTAAAGAGAAATTTAGCT
GGTTGAAATTGTGCCGAGGGATTATTTTGGTAATCATTATGCTTTTCTTC
CCTCTGAAgtaatttttgtgtttttctaaaaattaaatgCGCATTTTAAA
TCAAAGTCAAAGAGTTccacaaaaaaacaaataaagttGCGGGCCATCTA
ATTTCGCCAGGGGTCCAAACACAAAGGTCTTGAAATAGAGAATGAAGTCA
ATATCTACGTAATTCCCTACATGGGGCCAATAGAAATGACtaagtgtttt
taaaaacatttttgggcGGATCGGCTTGTCACAAATTAATGTGGTTTAAT
TTCCTGATCATTTAATTCAACAGTTTCAAAGTTAAAGGTCACACCTTtct
ccaaaaaagttgaaaaactaTGCGTCATTTGTTTTTAATTCCCAATGAAT
AACAAAGTAATTTTCAATAGGGGAAACCTGGTAACATTAATTATTTTCCG
GGATATCAAAGATTTTGCGGTTATATATAATATCATGATAAAAATgacaa
ttaaaattaaaatgatgAAGCAGGGGTTGCTCATATTTGAATTTGGGGCT
GGGACACCTACAGTTCAAAATGAGTAATAACTTGAAAattagattatttt
ttaatttttacaaactaaaaatagatttattactcaatttttgaagaaga
agaaaattttgcggTGAATTTCCAACTGCTCCAAGTGTAATGACCCCATG
GAGTTTTACACATGTTTTTTCTAATTcatattttgagcattttttttact
tttcaaattttagattgttattcaattatatttttgattacCCAACCCTA
CTAGcatttatacgtttttttttataagaacatccaaattttttgaagcc
tttggatgttgttaactttttgagttttaagcctaaagatattcttaaac
atgttcttattttgacaattttttgagcatttttgcccatttttctaaga
accGACTGTTAAAGACTCGACAaaacattaaaatgttcttaacttgttct
taacattttggccatcgaagccttatgctcttattagtttgttcttataa
aaaaacgtgtaattaccGTTAAAACTATTCGTGTCATGTCACTTGACTTG
TGTTTATTCTCACAAAAAATAGTTCAATTTTATTCCTTAATTATTCTTTT
AATGTGTACAATACCCTAGATTTCATTTATGCAAAATTCCTTCAATGAAA
TACCTTAGCCCATGAGCTGTCCTTTTATAAAAAGCTATGGCATTTCATTA
TTATTAGTTTTTCATAAATTGCAGGCTGCCTCTGTACCTCTTTACaagaa
acctttttaaattttactgtGGAGAATTATTAGTATCTCGACCAATCGAA
CGAGTTCTTTTAAAATACTTATGTGGCCTTTCTTATAGAATAGGAGGAGT
AGATCTCATAATAGAACTTTTAAATTAATTTAAGGTCGTAAAGAATACCT
ACTAAACAATACAaaggtaataaaaataatagTTAATTATATCAAGGATA
AATGGTgcactttttttaaacatcagAGTTATTTTAAAAAAGCAGGAAAT
TTTGACTGAAATATTATAGATgagatattttttatgaatgttTTAGTTTT
AAAACTTCAGGAAACAGGAAGCGAATCCGAGggttgaattgaatttttta
gacattttattattttatattcaAGATTCTCTGATTGCTGTGTTGAGTTG
CTTGATGCAATAAAGTTTTTAGTTGATCGAGGTTTGGTTTTGGTTTTATG
GTGTGTGGCAAAGTCTTGATTATCTGAAAGgctattcattattttttttg
actcgGTGGTTGGAACAAAATACCTGAGCATTTCATTAATAAGGAATTGA
CAATGTCCGATTTGTTTTACTTTGCAtatttttggtgaaaactttggATA
TTAATATTGTACCAACCAGATTTGTCATTAgagatttgattttttgtgtt
agtggtcaattttgttttaaaaagtaagttcatgattctctaattcgaat
ataaaagtttcagtcccttgaagatcgaactaGAGAGATCGAGTTGTAGA
TACGTAAATAttcaaaagacacgctgattttgtccctgggacaaaagaag
atttcatttttattggtagaaagaaaaatggggtgagGCACGAGAAGGCG
TTTTAGGTtgatgggatggagcatgtcacattgcaccaacgcgataAAAA
CTTCTTGTGTCCCCAAGACTTAAGGGTCCAGCCTTTCAGTACTTTTTCCG
AGGCGAAAGGTGCTTGAAATTTGCTCCATTTTACCATATATACCATCGTA
AATTTAAGGATAAGTTAAACTTAAAACACTGGATTGAAAATTTAATAGTT
TATTAAAGTCAGGTTACTCATGAGCTTCTATAATCTTTAAAGCTTTGATT
AATTAATCAGTGACTTAATGCCTTATAATACCTCTGTTAATGACTTTGTA
ATGGCCTATAATTGGATTAAGATAAAgcaatagaaaaaaatgaatcgTTT
ACTTTATTAATCCCAAGCTATTATCTCATCAATTAATNAAAAAAATGAAG
CGTTTACTTTATTAATCCCAAGCTATTATCTCATCAATTAATTCAAGCCA
AACAAAAAAGCGTTTCCTATGGCCCGCTACGTGTGATTCGAACTAAAAAT
AGATGCGCTGTGTATAGGTGATGTGTGATTTACTCCTTACTCGGTATGGA
AAAGTATGGGAAATTTtgaaagtcattataaaaagggGATCTAAAATTAG
CTTTTGGGAACACCGCCTTCTATTTTGAGAAGTTGCACCGCTTTTGAGTT
TCCGATCTTGATTCAATGTGGGTGCAATAAGACCAGACATAATACACCGG
AATAAATATTCTGAGATGTTTCGGATTTATAATGAATTTTGCACTTGAGT
CTTGAGGCATTTTGAATTTGGAGTCAAACAATGTGGGACTCATCTTGAAA
ATCATagtataaaattttaaagactGAGATTGAGATTATATCAAGCCCGg
aaagctggcacacaacattgtttcaacgttcatctaatcaCACAACATGA
TATAACGTCCATGTAACATTaaagataaacgttgaaacaacgttgtgtac
cagcttgGAGGGTAAGCTTGGTTTTAATCCATAACAAGAAAGGCGTGGGC
AGTGAGAGTTAAATGTTTTTGACATTATTAAGAGATTATTCACGCTTTGA
CTAACCGTCTTCTTTCATTCTTTTCTTCAGGTATTGACTCAAGATGATTG
GAGCTACTCAATCAACAATTTTGACACGATCATTCAACCTTCGAATGATC
TTAATCACATCTATTTTGACAATCGGTCTATTCACCGAGATATCCGTCGC
TAAACCGACAACAATAAACACCGACGAAGATTTAACGACGGCTTTATATC
AAACCGATATCGGCCGACAAATGATTCGTCGACGCCAACGACGTAGCATA
GAAGCGTGTTATGCTGAATGTAAAACGTCAGAGAAAATTTGTTACGATAA
TGTAGAAAATGACTCATTCCAGGAGACCCTTGTGTGCATGCAAGCCACAG
ATGGCTGTAAAAATGATTGCGACGCTTTGGCTGGCAAAAGAAGGAGAAAA
CGTTTCGTAGATGCATTGAAAAGTTTACACAGTCACCACTTGACGCTAGA
TTCTGAAATGCAATAATTGCTTACGTCATCATAtttgaactttttagaaa
tatatttttttgtatattgCGGCATTGTTATCCGAAACTTTTTAAAACGT
TGATCCGGGctaatatgaaaataatttcatgGGTGCCCACGCCCTTTGAA
CGCCTTTACCACCTTAAGTAATTTGGAATTTCTGCAGTGCTAAGCCATAA
TTTTCTAAGTTGAATGAAATTTACTCAGGCTGTGGCTTTGAGAAGAAAAA
TTGTTTCATTCAATTTCAATATACAATTTCAATATATTTGAAAATCTGAA
TTATtctaaaatatatttatttatagacaaaaaattattaattaatttat
gaaaatatatttatagttttgttaaaaatatttctagaaaaagtaaaaat
cctttgtaaaaaatatatacagtcactctgacctgaaaGAAGAACT Coding sequence (CDS) from alignment at scaffold_509:35073..40518+ >TCONS_00069817 ID=TCONS_00069817|Name=TCONS_00069817|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_509:35073..40518+ (Clytia hemisphaerica)
ATGATTGGAGCTACTCAATCAACAATTTTGACACGATCATTCAACCTTCG
AATGATCTTAATCACATCTATTTTGACAATCGGTCTATTCACCGAGATAT
CCGTCGCTAAACCGACAACAATAAACACCGACGAAGATTTAACGACGGCT
TTATATCAAACCGATATCGGCCGACAAATGATTCGTCGACGCCAACGACG
TAGCATAGAAGCGTGTTATGCTGAATGTAAAACGTCAGAGAAAATTTGTT
ACGATAATGTAGAAAATGACTCATTCCAGGAGACCCTTGTGTGCATGCAA
GCCACAGATGGCTGTAAAAATGATTGCGACGCTTTGGCTGGCAAAAGAAG
GAGAAAACGTTTCGTAGATGCATTGAAAAGTTTACACAGTCACCACTTGA
CGCTAGATTCTGAAATGCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069817-exon-scaffold_509-1491911889:35073..35252 | TCONS_00069817-exon-scaffold_509-1491911889:35073..35252 | Clytia hemisphaerica | exon |
| TCONS_00069817-exon-scaffold_509-1510915933:35073..35252 | TCONS_00069817-exon-scaffold_509-1510915933:35073..35252 | Clytia hemisphaerica | exon |
| TCONS_00069817-exon-scaffold_509-1575043694:35073..35252 | TCONS_00069817-exon-scaffold_509-1575043694:35073..35252 | Clytia hemisphaerica | exon |
| TCONS_00069817-exon-scaffold_509-1491911889:39653..40518 | TCONS_00069817-exon-scaffold_509-1491911889:39653..40518 | Clytia hemisphaerica | exon |
| TCONS_00069817-exon-scaffold_509-1510915933:39653..40518 | TCONS_00069817-exon-scaffold_509-1510915933:39653..40518 | Clytia hemisphaerica | exon |
| TCONS_00069817-exon-scaffold_509-1575043694:39653..40518 | TCONS_00069817-exon-scaffold_509-1575043694:39653..40518 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_509 | supercontig | scaffold_509:35073..40518 + |
Blast
The following BLAST results are available for this feature:
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