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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069815 ID=TCONS_00069815|Name=TCONS_00069815|organism=Clytia hemisphaerica|type=transcript|length=4656bpRun BLAST on NCBI protein sequence of TCONS_00069815-protein >TCONS_00069815-protein ID=TCONS_00069815-protein|Name=TCONS_00069815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=584bp MLLCNLFLLKSFFLCFLVYQSNIFFLLIDHKKQADHLIEQKMDIQFEREARun BLAST on NCBI transcript from alignment at scaffold_509:6617..21780+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069815 ID=TCONS_00069815|Name=TCONS_00069815|organism=Clytia hemisphaerica|type=transcript|length=15164bp|location=Sequence derived from alignment at scaffold_509:6617..21780+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_509:6617..21780+ >TCONS_00069815 ID=TCONS_00069815|Name=TCONS_00069815|organism=Clytia hemisphaerica|type=CDS|length=3510bp|location=Sequence derived from alignment at scaffold_509:6617..21780+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069815 vs. Swiss-Prot (Human)
Match: KT3K (Ketosamine-3-kinase OS=Homo sapiens GN=FN3KRP PE=1 SV=2) HSP 1 Score: 325.865 bits (834), Expect = 2.748e-100 Identity = 153/310 (49.35%), Postives = 204/310 (65.81%), Query Frame = 1
Query: 1507 MEVFLKQEFKTDDVKDLHTSSGGCISDGRAFQINAQKIFIKTNNKDEADVMFEGEKEGLNEILKTNTVKVPTPIKVFKWPENGFGFAMEYLDLKNLRSSSSQLGTQLARLHMHNINKLNNIE-SXXXXXXXXXXXXXXDGIYQFGFHATTCCGYIPLNNTWNNDWMTFYVRQRLEDKVNRIQEEYGDRQLMELWSELQLKIDQLFKGLEIQPSLIHGDLWGGNAGQLVNEPVVFDPAAFYAHHEFELSITDMFGRYDPGFYKSYHALIPKAKGFEERHQLYILFHYLNHWNHFGQGYRSSSVSTMRKILK 2433
ME L++E V+ S GGCIS GR++ + ++F+K N K EA MFEGE L ILKTNTVKVP PIKV P G ME++D+++L S +++LG QLA LH+ N KL + A + + +FGF TCCGY+P N W DW+ FY RQR++ +++ +++E GDR+ ++LWS LQLKI LF+ LEI P+L+HGDLWGGN + + PV+FDPA+FY H E+EL+I MFG + FY +YH IPKA GFE+R QLY LFHYLNHWNHFG GYR SS++ MR ++K
Sbjct: 1 MEELLRRELGCSSVRATGHSGGGCISQGRSYDTDQGRVFVKVNPKAEARRMFEGEMASLTAILKTNTVKVPKPIKVLDAPGGGSVLVMEHMDMRHLSSHAAKLGAQLADLHLDN-KKLGEMRLKEAGTVGRGGGQEERPFVARFGFDVVTCCGYLPQVNDWQEDWVVFYARQRIQPQMDMVEKESGDREALQLWSALQLKIPDLFRDLEIIPALLHGDLWGGNVAEDSSGPVIFDPASFYGHSEYELAIAGMFGGFSSSFYSAYHGKIPKAPGFEKRLQLYQLFHYLNHWNHFGSGYRGSSLNIMRNLVK 309 The following BLAST results are available for this feature:
BLAST of TCONS_00069815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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