TCONS_00069782 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069782
Unique NameTCONS_00069782
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069782 ID=TCONS_00069782|Name=TCONS_00069782|organism=Clytia hemisphaerica|type=transcript|length=1475bp
CACTTTTTCGCAAGAAAATAATAAGCAGTGCTACCTGCACGTCAacataa
ataaaaagttaaggaaaaaacaatttcattttcgtcAAACCTTTGAAAAT
GCAGGATAATTACTTCGGACACCATAATATGCAAACCAAACTACCGGACA
CCATGGGACAGAATTACGGAAATTTGTATTCATTGAACAAAACAACAAGC
GCCACAGTCAAAACACCAATCCGACCAATTACCAAACTTCCCACCACCTG
CACCACAAATACGCACCCAAAGAAATCCAGAACTGTTTTCACCAAGAAGC
AAATCAATGAATTGGAAAGTGTATTTTACCAGAAGCGATATCTGACCATT
AAAGATCGTGAAGAATTATCGAGAAGATTGACGCTGACGGAAAATCAGGT
GAAAGTCTGGTTCCAAAACCGACGTAACAAATGGAAACGAGAAATGAGTT
TCAAAGTGGAATTTGCCAAATTCAACATGGTGCCCAACCCCTTGAACATG
GGTAGAGGTGTAGATGGTACTTTACCGAACAATCTTATGTTGCCCACAAC
AACTACGTCACCGACAGAAACATCGGATTTTCAAATGACATCACATCGTT
ATGAGGGATATGCATACCGTAATGCATTCCAAGACAGTTATTATAATCCA
TATCCAAACGTGTTCAACAACCAGGACACACAAAACCAACATAATTATTC
ACCACTTTCAAACAGCAGTAGTAATAACGAAGTCTCCTATCAAGACAACA
ACACTTCTATGCCTCAAACTTCGGTTGCTTTGGAAACATACGACACCAAC
TCCATTGTTTACCCACCCCCACCACCACCGCCGCCAGCACAACCACCACA
ACAATCGGTAGCGCAAAACATGACGGACTACCAAAATCAGCAACATCATG
CTATTTATTCACACTACAACAACTGCGACACTCAATATGACACAACAAAA
TACCAAGGAATGGATCAACAAATCCCCTCCTCGTACGACATTCACAACTA
TTCACCAACCGGTCAAACAAGCTCATACACATCACACAGATACACTGATG
AAGCAACGCAACCACAAACCGACCCCATCACATCTCAAATATCCCCTTTA
GTAGCCAAATACACAGATGAACAACAACAAGCTTCACCTTACGAAGCGTG
CAAGTACACAGAACACAACCAACAAACTACTTCATACACGCCCAGACTCA
CGCCCATGGTTCCCACAACATCAGGGCGTGAAATGTACACTGATAATACA
GGTGTTGTTTACACTACATTAACTGATTACAGAAACAGTAGTGAAAACCA
AACCTTAAACTTGCCCAATCCACAATTTACATTCGGCAGTCACTATTGAA
GGAAAGATGCTTTCATACAcgtcaaaaaaaataatagttcttagttttta
tgtattttaagtatttttgtaaATTGTACATAGACATGAAtgagttttat
tttcatttttatcacgCATTAATAC
Run BLAST on NCBI

protein sequence of TCONS_00069782-protein

>TCONS_00069782-protein ID=TCONS_00069782-protein|Name=TCONS_00069782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=416bp
MQDNYFGHHNMQTKLPDTMGQNYGNLYSLNKTTSATVKTPIRPITKLPTT
CTTNTHPKKSRTVFTKKQINELESVFYQKRYLTIKDREELSRRLTLTENQ
VKVWFQNRRNKWKREMSFKVEFAKFNMVPNPLNMGRGVDGTLPNNLMLPT
TTTSPTETSDFQMTSHRYEGYAYRNAFQDSYYNPYPNVFNNQDTQNQHNY
SPLSNSSSNNEVSYQDNNTSMPQTSVALETYDTNSIVYPPPPPPPPAQPP
QQSVAQNMTDYQNQQHHAIYSHYNNCDTQYDTTKYQGMDQQIPSSYDIHN
YSPTGQTSSYTSHRYTDEATQPQTDPITSQISPLVAKYTDEQQQASPYEA
CKYTEHNQQTTSYTPRLTPMVPTTSGREMYTDNTGVVYTTLTDYRNSSEN
QTLNLPNPQFTFGSHY
Run BLAST on NCBI

transcript from alignment at scaffold_508:132661..138189+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069782 ID=TCONS_00069782|Name=TCONS_00069782|organism=Clytia hemisphaerica|type=transcript|length=5529bp|location=Sequence derived from alignment at scaffold_508:132661..138189+ (Clytia hemisphaerica)
CACTTTTTCGCAAGAAAATAATAAGCAGTGCTACCTGCACGTCAacataa
ataaaaagttaaggaaaaaacaatttcattttcgtcAAACCTTTGAAAAT
GCAGGATAATTACTTCGGACACCATAATATGCAAACCAAACTACCGGACA
CCATGGGACAGAATTACGGAAATTTGTATTCATTGAACAGTAAGTTaatc
attttcaatttattACTCTTTACTTTTTATTACCCCATCTTTTTATTTAT
TGCCTTTCAATAATTGTGGCATTAACATAATGTAAACGAATAAATAAATT
CGAACATCAATAAATTTGTTTCGCTTAACAATTTTCACCGGATAAAGCAA
TCGATATAAATCCTGAACCAATTGACTCCTTTATTTTTTCACGGACATCA
TTTTTATCGAGGGAAATAAAAacactttgcaaaaagttttatttttccag
TGATGAAATAATAACGACAGGGTCTGACTGTTGCATGGAGGACTAAAAAG
ACTTCACATTGTTTGGTTTTATCAGAAAATAAGGTAGACCGCTATCACCT
CTGGGGCATCAAAGCATTTTGCAAAGGAAGACTTGGCAGATGTTAGAAAC
GCTATTCTGAAGAACCATGATTGTCGATTTCTCTTGTCATTGCACAGAAT
GCCAGTCATACTGTAGTGTATTTTGAAAATAGGCGTCTACTGAAGTTTTC
ATCGATTCaaagatttttataaattttatcggattttcaaagttttcagc
ATTTTTCGAAGTTCTCGATAATAAACAAAGTCGAAACATAACATAACAAA
Tcatatttttcaagattttaattttttttttcaagatttcaaagcttttt
ccataaaattcGTCATTTTCAATGCTCTTTGACATGAACCGAAGTTGTTT
AGCGGATATTTTgcgtgtttttttatattaaaagGATACGGAAGGACGTG
GTCATTATCAACAATTTAGACGTCCAAACCGCAAAAATGTTGTCACAGGT
CACTTTTGTTATGCCAAAAGCAATTTTGTTTTTGGCAACTTTTCAGTGAC
ACACGCACACACATGTTTTATCAATATCGATGcagatgaaataaaaatat
atttctccAGAGAAAATCagccattgttttttttttcaaaaaattcaaaa
aatgaattgtTCAAAAAGCTAAAAGGATATTTAGATACCTTATcggtcct
ttttacgccggcccttatttcgccacagcctaattttgggcttacgccaa
taagggccgtaaataacgtcaaaatttgtaaacatcgctattcaggcttc
aaaacagtaagtattaactaaaatttacattaaaatgtcatctttcagta
ttaaactgttgaaaattccattaaAAATCATTGGTTGTCGTGAAGTTTTG
GACATAGAGTGAAAGTTTTTGGAGTTATATAAGTTACATAGAGTTTCATC
CTTTAATCATGcctaaaattctttaaattgagaaaaaatggtcaagtgaa
aattacaaaattttggccctttttatgCCTGCCCTTATTACGCcgcgagc
ccaaaaataacgccaataagggccggggtaaaaagggccgataaggtagt
ttgaaatatttttccatagATTTCTTCCATGATTTTAGAAATTTGGAAAT
GTCACTtctgtcattttattttttgaaaacgaaaggattttgagattttt
gctcAGGACCATGGAATAATTTACAATCAAAATATCTCTAACTATCTGAT
TATTCCTTTAAGCATTGTTGTAAAGATAATTCACTGTGACAAGGAAGAAG
TGAGGTTTATTTTAACCaatgaaatttttcgaaaacgaAAATTATCAAGA
ACAGCGCAAATTTTCTTATCTAATTTAAAGCGTTTAAAAGATCAGAATCG
TCTAGAAAGTGGAAATTagggagaaaataaaaaatatctaaaaataaaat
atttactcacttaaaaaactttttctaaaactaaaactaatttgaaattg
aaatttaactTCTTGGGAAGGAATGAagattttctcgatttttttttgct
ggaaaacCTTTAATCCTCGGTTAGACACGTATTGGCAATCCAAGCGGTAA
GATGAAAGAAACTTTACAAACTCGAAAGATTGTTATTGTGCTAATTGGCA
TGGCAGAGAATTTGGTATTTAATTGAAGTGCAGAGAAGCACCACGTAACA
ATTCTTGATTGATCAATCAACTTCTCAACATGATGATGTTTTTCCACTTT
CTTTATGCAACTAGACAAAACTACTTAAAGATCTTTCAACAGATAAAGCG
ACAGTACCAGAATTGAAAACAGTTTCGAAAATGCAGTGCAACTTGTAGAA
GATGTAAAATGTGAAAATAGAAAACCGACAACGAATGGCTGCATGTAACT
AAAtgaataaacataaaaaattatttgaaatattcTGAAAATTATCATAT
CATGATATTATATTGATACAATCTTCAAATCATTATCCCTAATACTGGGT
GGTGTCCCGGGGAGGGGGCAGTCGATTAGTAAACGACCGTAGACCGTAAG
TTACTCCAAGGTCCCGAATAAACCTCCCAATCCGGTTATCAATTTCCAAT
AATTTTCGCATCCCCACGTTCTTATAATAAGGACCCCTTCCCGTatattc
atttttgaaaatattttcaggacACCCTCAAATAATTTCGGACCCCCCTA
TTCGGGATCTTATTATTCAAAAAGGTGATATAATTTTGAGACAGATTATA
AGCTGATCTTAttctgaaaaagtttttatttaactaagtcatttttatta
aaaaattccaagaaAACTGAAATTCCTTCCACGGTTAATTAGGCTAATAA
GCCTACATTAGTGGTGAATAAAGAATTtcgaaattaacaaaattgaatta
tttgaaAGATTCCTCCCCTCCTCTTTGTAATAAGGCAAATTTCACGTGAT
GGTTAAAATACCACTAATGTAAGGGAAACATGCCAGTTTtgattaaaata
tttcatagcGAAACTGtcttcaaatgaaaaactttaataaaGCTCAGTAC
CAACTAAAAGATTAAAAGGTGTGATTGGCCAAAATTATATTGCAAAAATA
TATTATTAGCGTAGGACTTCggcgaaaatttctttgaacTGTTAGTGATG
TTTAACAAAATGCCTAAATTTAATTGCTTTTGTAAATCAAGTTACTGGTG
AAGTATGCTCAATTATACTTCAATCAGTGCGTGTACACATCATGCCAATA
AATCTTTATCAGGCCAATCGCACCTAATTGAACACATTTTCTATAATTTG
GCACTCCAAGGCAAAAACTTTCAGCATTTTGAATCTAAAGCAGCAATCTG
AAATGGCATGAATTTGGTTTAGCTTAACAGTGACCTGTATAATGAGGTAT
CAATTACAGCTATTAGCATGTCTAGCCGATGTCTACAAGATTTGAGGGCG
GTATAGAGTGACCGGAATTGTGAATTAGTTGCAAATCTAATAAAAAATGG
GAAACGTTTTAATGCTTGTGTGGTGGTATAGACTGTTGGGTTGAGAGAAA
GGAAGCGAgagttaaaaacaaaacaaccaCGATGTTGGTTGCAGGAAACT
CCAACATATTAACATTTTACCATAGATTATAGCTTTTTGTAAAGTGTCAT
TGATCATTGTGCTATTGTCCGTATGCTCCAGTGGAAGATAAACTTTCAGT
GGGAGGTTGTAGCAAACTAACCTGCCTATCCAGGGGCTATTGTTTGGTTT
TTCGGAGACGACCGATGCCTGTAGGACTAGAGGGACAATCCTCAAACCCT
CCTTTTGACTGATAAATTGTAATGCAATAAAAAGATCCCTATAAAGACAC
TTTATTCCTTCACAGAAACAACAAGCGCCACAGTCAAAACACCAATCCGA
CCAATTACCAAACTTCCCACCACCTGCACCACAAATACGCACCCAAAGAA
ATCCAGAACTGTTTTCACCAAGAAGCAAATCAATGAATTGGAAAGTGTAT
TTTACCAGAAGCGATATCTGACCATTAAAGATCGTGAAGAATTATCGAGA
AGATTGACGCTGACGGAAAATCAGGTATCAAAAATTTCCAATGACAGACA
GTGTGCTGTGAAAGAAGTACACTTGTTTCGACAGCAGATTTTTTAATCTT
TGAAATGGGTACTGTTTTTAGTAAATCCTattccaaatttcaaaatagca
tAGAGGATTGTAGCCTGATTCCATTttggtaccgttggaaagctttttat
actctttctaaaGGCATGCGGTTTATACCCCTTCAAACAACGTGGTCAAG
AGCTATGGCAAAAATCTTTGAGCTGGTTTTCTGACCTATTTTTGACTCAG
ACACacgacttttgggggactgagGGTTAAAATACACAGTTCTAACAGTT
CAGTGTCCAATGATTAATACTAAGAAACTTGATTCCTTTTTCCATGTTAC
AGGTGAAAGTCTGGTTCCAAAACCGACGTAACAAATGGAAACGAGAAATG
AGTTTCAAAGTGGAATTTGCCAAATTCAACATGGTGCCCAACCCCTTGAA
CATGGGTAGAGGTGTAGATGGTACTTTACCGAACAATCTTATGTTGCCCA
CAACAACTACGTCACCGACAGAAACATCGGATTTTCAAATGACATCACAT
CGTTATGAGGGATATGCATACCGTAATGCATTCCAAGACAGTTATTATAA
TCCATATCCAAACGTGTTCAACAACCAGGACACACAAAACCAACATAATT
ATTCACCACTTTCAAACAGCAGTAGTAATAACGAAGTCTCCTATCAAGAC
AACAACACTTCTATGCCTCAAACTTCGGTTGCTTTGGAAACATACGACAC
CAACTCCATTGTTTACCCACCCCCACCACCACCGCCGCCAGCACAACCAC
CACAACAATCGGTAGCGCAAAACATGACGGACTACCAAAATCAGCAACAT
CATGCTATTTATTCACACTACAACAACTGCGACACTCAATATGACACAAC
AAAATACCAAGGAATGGATCAACAAATCCCCTCCTCGTACGACATTCACA
ACTATTCACCAACCGGTCAAACAAGCTCATACACATCACACAGATACACT
GATGAAGCAACGCAACCACAAACCGACCCCATCACATCTCAAATATCCCC
TTTAGTAGCCAAATACACAGATGAACAACAACAAGCTTCACCTTACGAAG
CGTGCAAGTACACAGAACACAACCAACAAACTACTTCATACACGCCCAGA
CTCACGCCCATGGTTCCCACAACATCAGGGCGTGAAATGTACACTGATAA
TACAGGTGTTGTTTACACTACATTAACTGATTACAGAAACAGTAGTGAAA
ACCAAACCTTAAACTTGCCCAATCCACAATTTACATTCGGCAGTCACTAT
TGAAGGAAAGATGCTTTCATACAcgtcaaaaaaaataatagttcttagtt
tttatgtattttaagtatttttgtaaATTGTACATAGACATGAAtgagtt
ttattttcatttttatcacgCATTAATAC

Coding sequence (CDS) from alignment at scaffold_508:132661..138189+

>TCONS_00069782 ID=TCONS_00069782|Name=TCONS_00069782|organism=Clytia hemisphaerica|type=CDS|length=3753bp|location=Sequence derived from alignment at scaffold_508:132661..138189+ (Clytia hemisphaerica)
ATGCAGGATAATTACTTCGGACACCATAATATGCAAACCAAACTACCGGA
CACCATGGGACAGAATTACGGAAATTTGTATTCATTGAACAAAACAACAA
GCGCCACAGTCAAAACACCAATCCGACCAATTACCAAACTTCCCACCACC
TGCACCACAAATACGCACCCAAAGAAATCCAGAACTGTTTTCACCAAGAA
GCAAATCAATGAATTGGAAAGTGTATTTTACCAGAAGCGATATCTGACCA
TTAAAGATCGTGAAGAATTATCGAGAAGATTGACGCTGACGGAAAATCAG
GTGAAAGTCTGGTTCCAAAACCGACGTAACAAATGGAAACGAGAAATGAG
TTTCAAAGTGGAATTTGCCAAATTCAACATGGTGCCCAACCCCTTGAACA
TGGGTAGAGGTGTAGATGGTACTTTACCGAACAATCTTATGTTGCCCACA
ACAACTACGTCACCGACAGAAACATCGGATTTTCAAATGACATCACATCG
TTATGAGGGATATGCATACCGTAATGCATTCCAAGACAGTTATTATAATC
CATATCCAAACGTGTTCAACAACCAGGACACACAAAACCAACATAATTAT
TCACCACTTTCAAACAGCAGTAGTAATAACGAAGTCTCCTATCAAGACAA
CAACACTTCTATGCCTCAAACTTCGGTTGCTTTGGAAACATACGACACCA
ACTCCATTGTTTACCCACCCCCACCACCACCGCCGCCAGCACAACCACCA
CAACAATCGGTAGCGCAAAACATGACGGACTACCAAAATCAGCAACATCA
TGCTATTTATTCACACTACAACAACTGCGACACTCAATATGACACAACAA
AATACCAAGGAATGGATCAACAAATCCCCTCCTCGTACGACATTCACAAC
TATTCACCAACCGGTCAAACAAGCTCATACACATCACACAGATACACTGA
TGAAGCAACGCAACCACAAACCGACCCCATCACATCTCAAATATCCCCTT
TAGTAGCCAAATACACAGATGAACAACAACAAGCTTCACCTTACGAAGCG
TGCAAGTACACAGAACACAACCAACAAACTACTTCATACACGCCCAGACT
CACGCCCATGGTTCCCACAACATCAGGGCGTGAAATGTACACTGATAATA
CAGGTGTTGTTTACACTACATTAACTGATTACAGAAACAGTAGTGAAAAC
CAAACCTTAAACTTGCCCAATCCACAATTTACATTCGGCAGTCACTATTG
AATGCAGGATAATTACTTCGGACACCATAATATGCAAACCAAACTACCGG
ACACCATGGGACAGAATTACGGAAATTTGTATTCATTGAACAAAACAACA
AGCGCCACAGTCAAAACACCAATCCGACCAATTACCAAACTTCCCACCAC
CTGCACCACAAATACGCACCCAAAGAAATCCAGAACTGTTTTCACCAAGA
AGCAAATCAATGAATTGGAAAGTGTATTTTACCAGAAGCGATATCTGACC
ATTAAAGATCGTGAAGAATTATCGAGAAGATTGACGCTGACGGAAAATCA
GGTGAAAGTCTGGTTCCAAAACCGACGTAACAAATGGAAACGAGAAATGA
GTTTCAAAGTGGAATTTGCCAAATTCAACATGGTGCCCAACCCCTTGAAC
ATGGGTAGAGGTGTAGATGGTACTTTACCGAACAATCTTATGTTGCCCAC
AACAACTACGTCACCGACAGAAACATCGGATTTTCAAATGACATCACATC
GTTATGAGGGATATGCATACCGTAATGCATTCCAAGACAGTTATTATAAT
CCATATCCAAACGTGTTCAACAACCAGGACACACAAAACCAACATAATTA
TTCACCACTTTCAAACAGCAGTAGTAATAACGAAGTCTCCTATCAAGACA
ACAACACTTCTATGCCTCAAACTTCGGTTGCTTTGGAAACATACGACACC
AACTCCATTGTTTACCCACCCCCACCACCACCGCCGCCAGCACAACCACC
ACAACAATCGGTAGCGCAAAACATGACGGACTACCAAAATCAGCAACATC
ATGCTATTTATTCACACTACAACAACTGCGACACTCAATATGACACAACA
AAATACCAAGGAATGGATCAACAAATCCCCTCCTCGTACGACATTCACAA
CTATTCACCAACCGGTCAAACAAGCTCATACACATCACACAGATACACTG
ATGAAGCAACGCAACCACAAACCGACCCCATCACATCTCAAATATCCCCT
TTAGTAGCCAAATACACAGATGAACAACAACAAGCTTCACCTTACGAAGC
GTGCAAGTACACAGAACACAACCAACAAACTACTTCATACACGCCCAGAC
TCACGCCCATGGTTCCCACAACATCAGGGCGTGAAATGTACACTGATAAT
ACAGGTGTTGTTTACACTACATTAACTGATTACAGAAACAGTAGTGAAAA
CCAAACCTTAAACTTGCCCAATCCACAATTTACATTCGGCAGTCACTATT
GAATGCAGGATAATTACTTCGGACACCATAATATGCAAACCAAACTACCG
GACACCATGGGACAGAATTACGGAAATTTGTATTCATTGAACAAAACAAC
AAGCGCCACAGTCAAAACACCAATCCGACCAATTACCAAACTTCCCACCA
CCTGCACCACAAATACGCACCCAAAGAAATCCAGAACTGTTTTCACCAAG
AAGCAAATCAATGAATTGGAAAGTGTATTTTACCAGAAGCGATATCTGAC
CATTAAAGATCGTGAAGAATTATCGAGAAGATTGACGCTGACGGAAAATC
AGGTGAAAGTCTGGTTCCAAAACCGACGTAACAAATGGAAACGAGAAATG
AGTTTCAAAGTGGAATTTGCCAAATTCAACATGGTGCCCAACCCCTTGAA
CATGGGTAGAGGTGTAGATGGTACTTTACCGAACAATCTTATGTTGCCCA
CAACAACTACGTCACCGACAGAAACATCGGATTTTCAAATGACATCACAT
CGTTATGAGGGATATGCATACCGTAATGCATTCCAAGACAGTTATTATAA
TCCATATCCAAACGTGTTCAACAACCAGGACACACAAAACCAACATAATT
ATTCACCACTTTCAAACAGCAGTAGTAATAACGAAGTCTCCTATCAAGAC
AACAACACTTCTATGCCTCAAACTTCGGTTGCTTTGGAAACATACGACAC
CAACTCCATTGTTTACCCACCCCCACCACCACCGCCGCCAGCACAACCAC
CACAACAATCGGTAGCGCAAAACATGACGGACTACCAAAATCAGCAACAT
CATGCTATTTATTCACACTACAACAACTGCGACACTCAATATGACACAAC
AAAATACCAAGGAATGGATCAACAAATCCCCTCCTCGTACGACATTCACA
ACTATTCACCAACCGGTCAAACAAGCTCATACACATCACACAGATACACT
GATGAAGCAACGCAACCACAAACCGACCCCATCACATCTCAAATATCCCC
TTTAGTAGCCAAATACACAGATGAACAACAACAAGCTTCACCTTACGAAG
CGTGCAAGTACACAGAACACAACCAACAAACTACTTCATACACGCCCAGA
CTCACGCCCATGGTTCCCACAACATCAGGGCGTGAAATGTACACTGATAA
TACAGGTGTTGTTTACACTACATTAACTGATTACAGAAACAGTAGTGAAA
ACCAAACCTTAAACTTGCCCAATCCACAATTTACATTCGGCAGTCACTAT
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043454XLOC_043454Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069782-proteinTCONS_00069782-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069782-exon-scaffold_508-1491911889:132661..132849TCONS_00069782-exon-scaffold_508-1491911889:132661..132849Clytia hemisphaericaexon
TCONS_00069782-exon-scaffold_508-1510915933:132661..132849TCONS_00069782-exon-scaffold_508-1510915933:132661..132849Clytia hemisphaericaexon
TCONS_00069782-exon-scaffold_508-1575043694:132661..132849TCONS_00069782-exon-scaffold_508-1575043694:132661..132849Clytia hemisphaericaexon
TCONS_00069782-exon-scaffold_508-1491911889:136526..136734TCONS_00069782-exon-scaffold_508-1491911889:136526..136734Clytia hemisphaericaexon
TCONS_00069782-exon-scaffold_508-1510915933:136526..136734TCONS_00069782-exon-scaffold_508-1510915933:136526..136734Clytia hemisphaericaexon
TCONS_00069782-exon-scaffold_508-1575043694:136526..136734TCONS_00069782-exon-scaffold_508-1575043694:136526..136734Clytia hemisphaericaexon
TCONS_00069782-exon-scaffold_508-1491911889:137113..138189TCONS_00069782-exon-scaffold_508-1491911889:137113..138189Clytia hemisphaericaexon
TCONS_00069782-exon-scaffold_508-1510915933:137113..138189TCONS_00069782-exon-scaffold_508-1510915933:137113..138189Clytia hemisphaericaexon
TCONS_00069782-exon-scaffold_508-1575043694:137113..138189TCONS_00069782-exon-scaffold_508-1575043694:137113..138189Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_508supercontigscaffold_508:132661..138189 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0.174197	0	0	10.2068	7.09919	0.942833	0.378589	0	0	0	0	0	0	7.70245	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020479Homeobox_metazoa
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00069782 vs. Swiss-Prot (Human)
Match: HMX2 (Homeobox protein HMX2 OS=Homo sapiens GN=HMX2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.349e-18
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 3 
Query:  270 KKSRTVFTKKQINELESVFYQKRYLTIKDREELSRRLTLTENQVKVWFQNRRNKWKREMSFKVEFA 467
            KK+RTVF++ Q+ +LES F  KRYL+  +R  L+  L LTE QVK WFQNRRNKWKR++S ++E A
Sbjct:  150 KKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAA 215
The following BLAST results are available for this feature:
BLAST of TCONS_00069782 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMX24.349e-1857.58Homeobox protein HMX2 OS=Homo sapiens GN=HMX2 PE=2... [more]
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