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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069769 ID=TCONS_00069769|Name=TCONS_00069769|organism=Clytia hemisphaerica|type=transcript|length=3431bpRun BLAST on NCBI protein sequence of TCONS_00069769-protein >TCONS_00069769-protein ID=TCONS_00069769-protein|Name=TCONS_00069769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=608bp MSSTGGHHSSNRVVNDLGKRLLEAARNGNTEEVKQLMTNGAPLTTDWLGTRun BLAST on NCBI transcript from alignment at scaffold_507:170961..252867- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069769 ID=TCONS_00069769|Name=TCONS_00069769|organism=Clytia hemisphaerica|type=transcript|length=81907bp|location=Sequence derived from alignment at scaffold_507:170961..252867- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_507:170961..252867- >TCONS_00069769 ID=TCONS_00069769|Name=TCONS_00069769|organism=Clytia hemisphaerica|type=CDS|length=20097bp|location=Sequence derived from alignment at scaffold_507:170961..252867- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069769 vs. Swiss-Prot (Human)
Match: GABP2 (GA-binding protein subunit beta-2 OS=Homo sapiens GN=GABPB2 PE=1 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.390e-52 Identity = 90/152 (59.21%), Postives = 112/152 (73.68%), Query Frame = 1
Query: 733 DLGKRLLEAARNGNTEEVKQLMTNGAPLTTDWLGTTPLHLASIYGHTSTAEILIKSGINRDSRTKVDKAPLHFACQHGHMEIVKLLVSGGAHINATDMLKMTPLHWAVEANKFEICLILIKAGANTDLKNKFGKTALKIATEKKYNSIVQIL 1188
DLGKRLLEAAR G +EV+ LM NGAP TTDWLGT+PLHLA+ YGH STAE+L+++G++RD+RTKVD+ PLH A GH IV+LLV GA +NA DMLKMT LHWA E + ++ +LIK GA+ +KF K+A IA EK I+ IL
Sbjct: 5 DLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVVELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVIL 156 The following BLAST results are available for this feature:
BLAST of TCONS_00069769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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