TCONS_00069769-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069769-protein
Unique NameTCONS_00069769-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length608

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069769-protein ID=TCONS_00069769-protein|Name=TCONS_00069769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=608bp
MSSTGGHHSSNRVVNDLGKRLLEAARNGNTEEVKQLMTNGAPLTTDWLGT
TPLHLASIYGHTSTAEILIKSGINRDSRTKVDKAPLHFACQHGHMEIVKL
LVSGGAHINATDMLKMTPLHWAVEANKFEICLILIKAGANTDLKNKFGKT
ALKIATEKKYNSIVQILSAEKIKILQELDMLGQQDFRNHSVTSVEICRPG
DFNNLKKQKTHRFPMVAGTWTGGEPQSIDRQDMHERKMFGNFNKKRPLVS
SHTDVLSPSLGNLQLSKNKKIEDTSKGRSPLQQLVETVRQSTSNLESDNP
PRTIKPIKTTEIYDTKKEDGNMDSERTTCLPSNIPVISSLALKSLPPNIK
AIPLQMNIRDHLDATDVKQPENKPPQKQDGQPALKPALDVPIELLNQIIN
GEVTLHSLSSNSKEEADNNLVAINTEMGTIPIIPVKGEGGLQLIPVQKEA
HRHPSPPISHLMRHPPPAVVYPGNRPRYPVSLVRHPPTTGGQLFESEGLK
VSTVSSQQVRTPMLVPTGIYVQPGHPAFLQLHRPPPHSSAPPGQISIYPP
RQRQFTHPTHPPLIPTTPILQPTGRPQFLVHPAATRGSAAFVQPHLPTSY
VYVERDDG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043444XLOC_043444Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069769TCONS_00069769Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatPRINTSPR01415ANKYRINcoord: 97..111
score: 41.74
coord: 49..64
score: 41.06
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 48..77
e-value: 0.012
score: 24.8
coord: 114..143
e-value: 0.0025
score: 27.1
coord: 81..110
e-value: 4.3E-4
score: 29.6
coord: 147..176
e-value: 300.0
score: 8.9
coord: 16..45
e-value: 2700.0
score: 1.8
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 81..113
score: 13.491
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 114..146
score: 11.194
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 48..80
score: 12.075
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 3..87
e-value: 1.3E-19
score: 69.5
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 88..420
e-value: 1.0E-27
score: 96.6
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 116..173
e-value: 5.0E-7
score: 30.1
coord: 21..112
e-value: 1.7E-16
score: 60.4
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 48..167
score: 37.852
IPR020683Ankyrin repeat-containing domainSUPERFAMILY48403Ankyrin repeatcoord: 19..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 288..307
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 535..559
NoneNo IPR availableCDDcd00204ANKcoord: 45..167
e-value: 1.46262E-37
score: 134.433

Blast
[Close]
BLAST of TCONS_00069769-protein vs. Swiss-Prot (Human)
Match: GABP2 (GA-binding protein subunit beta-2 OS=Homo sapiens GN=GABPB2 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.891e-55
Identity = 90/152 (59.21%), Postives = 112/152 (73.68%), Query Frame = 0 
Query:   16 DLGKRLLEAARNGNTEEVKQLMTNGAPLTTDWLGTTPLHLASIYGHTSTAEILIKSGINRDSRTKVDKAPLHFACQHGHMEIVKLLVSGGAHINATDMLKMTPLHWAVEANKFEICLILIKAGANTDLKNKFGKTALKIATEKKYNSIVQIL 167
            DLGKRLLEAAR G  +EV+ LM NGAP TTDWLGT+PLHLA+ YGH STAE+L+++G++RD+RTKVD+ PLH A   GH  IV+LLV  GA +NA DMLKMT LHWA E +  ++  +LIK GA+    +KF K+A  IA EK    I+ IL
Sbjct:    5 DLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVVELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVIL 156
The following BLAST results are available for this feature:
BLAST of TCONS_00069769-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GABP22.891e-5559.21GA-binding protein subunit beta-2 OS=Homo sapiens ... [more]
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