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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069743 ID=TCONS_00069743|Name=TCONS_00069743|organism=Clytia hemisphaerica|type=transcript|length=1128bp
taaatccgctaGTGAATAAATCGTTTTCAAGTCTCGAACTATTCTGATTT
TTGGTGTACAAGACTTGTGATAATGTGGGGCGTTGGAAACATCTTTTTCA
CTATCGTTTACATCTGTATACTGTCGGTATCGTTCATTGGTAATCTTTTG
ATTATCGCAATCATCATCCGATCAAAGCAATTACGTCAACGAAATACAAA
TCTGTTGATTTTCAATCTGGCAATCTCAGATCTACTTGTAGCCACCATCA
ATGTACCGTATAATATCAGTGTCCTGATTGGCGCAACCAAGAATATCTTT
ACCTGCAAACTGGCTGTTTTCGTGGCTGTATTATGTTTCACAGTGGCACA
GTTCAACCTTTTGTTAATCACAGTCGATAGATATTTGGGAATCAACCATC
CTTTGAAATACAGGGCACGAATAACCACAAGAAAAACAATATCAGCTATT
GTTATAGCCTGGATTATTTCTAATGTTGTAGCCGCATTCCCGGTCATACA
TCGACCAGATCCTAGCAGCCTTGTCAAACGAAACACAAAAATATGCTTGT
TAGCTGATCTCCTTGCACCAATCACGTTATCGTGTTTCTTAATGGTAGTC
TTCTATCTTCCCGTATTGATAACCATTGTTTTATACCTACGAATCTTAAC
AACAATCGCTAGAGCCAGAGATAGCAACATTCGTACTTCTTCAACATGTA
GAAATCAATCAAGCTCATCTAAGAAAGGACtagcaaaaactgaaaataat
ggACAACCACCTCACAGTAAATGTAAACGAGTTGCAAATATCTGTAAACA
TGAGATTAAATCGGCCAAAATTGTCCTAGTACAAATTGCTCTTTATGTAG
GCTGCATGCTACCTATAACGATTTACGACATGTATGTTTCGTTTTCACAA
GACTTGACTAATAGTGACGTGATAACACAAATGCTGCTTCTATTGGCTTA
TTGTAGCTCAGCTATTAATCCCTTTTTGTATGGAATAAGAGATCCAAAAT
ATAGAAAAGCTATCAAAGACTTGTTTCATTGTATGTAACAAGACAACAGG
AAAAATCAAATGTCACGTTTGCCTGGAAAATACACTATTTTTTTTACCTA
AGAACAAGTTTACAAGTTGAGcttcggc Run BLAST on NCBI protein sequence of TCONS_00069743-protein >TCONS_00069743-protein ID=TCONS_00069743-protein|Name=TCONS_00069743-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MWGVGNIFFTIVYICILSVSFIGNLLIIAIIIRSKQLRQRNTNLLIFNLA
ISDLLVATINVPYNISVLIGATKNIFTCKLAVFVAVLCFTVAQFNLLLIT
VDRYLGINHPLKYRARITTRKTISAIVIAWIISNVVAAFPVIHRPDPSSL
VKRNTKICLLADLLAPITLSCFLMVVFYLPVLITIVLYLRILTTIARARD
SNIRTSSTCRNQSSSSKKGLAKTENNGQPPHSKCKRVANICKHEIKSAKI
VLVQIALYVGCMLPITIYDMYVSFSQDLTNSDVITQMLLLLAYCSSAINP
FLYGIRDPKYRKAIKDLFHCM Run BLAST on NCBI transcript from alignment at scaffold_506:366230..367357 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069743 ID=TCONS_00069743|Name=TCONS_00069743|organism=Clytia hemisphaerica|type=transcript|length=1128bp|location=Sequence derived from alignment at scaffold_506:366230..367357 (Clytia hemisphaerica)
gccgaagCTCAACTTGTAAACTTGTTCTTAGGTAAAAAAAATAGTGTATT
TTCCAGGCAAACGTGACATTTGATTTTTCCTGTTGTCTTGTTACATACAA
TGAAACAAGTCTTTGATAGCTTTTCTATATTTTGGATCTCTTATTCCATA
CAAAAAGGGATTAATAGCTGAGCTACAATAAGCCAATAGAAGCAGCATTT
GTGTTATCACGTCACTATTAGTCAAGTCTTGTGAAAACGAAACATACATG
TCGTAAATCGTTATAGGTAGCATGCAGCCTACATAAAGAGCAATTTGTAC
TAGGACAATTTTGGCCGATTTAATCTCATGTTTACAGATATTTGCAACTC
GTTTACATTTACTGTGAGGTGGTTGTccattattttcagtttttgctaGT
CCTTTCTTAGATGAGCTTGATTGATTTCTACATGTTGAAGAAGTACGAAT
GTTGCTATCTCTGGCTCTAGCGATTGTTGTTAAGATTCGTAGGTATAAAA
CAATGGTTATCAATACGGGAAGATAGAAGACTACCATTAAGAAACACGAT
AACGTGATTGGTGCAAGGAGATCAGCTAACAAGCATATTTTTGTGTTTCG
TTTGACAAGGCTGCTAGGATCTGGTCGATGTATGACCGGGAATGCGGCTA
CAACATTAGAAATAATCCAGGCTATAACAATAGCTGATATTGTTTTTCTT
GTGGTTATTCGTGCCCTGTATTTCAAAGGATGGTTGATTCCCAAATATCT
ATCGACTGTGATTAACAAAAGGTTGAACTGTGCCACTGTGAAACATAATA
CAGCCACGAAAACAGCCAGTTTGCAGGTAAAGATATTCTTGGTTGCGCCA
ATCAGGACACTGATATTATACGGTACATTGATGGTGGCTACAAGTAGATC
TGAGATTGCCAGATTGAAAATCAACAGATTTGTATTTCGTTGACGTAATT
GCTTTGATCGGATGATGATTGCGATAATCAAAAGATTACCAATGAACGAT
ACCGACAGTATACAGATGTAAACGATAGTGAAAAAGATGTTTCCAACGCC
CCACATTATCACAAGTCTTGTACACCAAAAATCAGAATAGTTCGAGACTT
GAAAACGATTTATTCACtagcggattta Coding sequence (CDS) from alignment at scaffold_506:366230..367357 >TCONS_00069743 ID=TCONS_00069743|Name=TCONS_00069743|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_506:366230..367357 (Clytia hemisphaerica)
TTACATACAATGAAACAAGTCTTTGATAGCTTTTCTATATTTTGGATCTC
TTATTCCATACAAAAAGGGATTAATAGCTGAGCTACAATAAGCCAATAGA
AGCAGCATTTGTGTTATCACGTCACTATTAGTCAAGTCTTGTGAAAACGA
AACATACATGTCGTAAATCGTTATAGGTAGCATGCAGCCTACATAAAGAG
CAATTTGTACTAGGACAATTTTGGCCGATTTAATCTCATGTTTACAGATA
TTTGCAACTCGTTTACATTTACTGTGAGGTGGTTGTccattattttcagt
ttttgctaGTCCTTTCTTAGATGAGCTTGATTGATTTCTACATGTTGAAG
AAGTACGAATGTTGCTATCTCTGGCTCTAGCGATTGTTGTTAAGATTCGT
AGGTATAAAACAATGGTTATCAATACGGGAAGATAGAAGACTACCATTAA
GAAACACGATAACGTGATTGGTGCAAGGAGATCAGCTAACAAGCATATTT
TTGTGTTTCGTTTGACAAGGCTGCTAGGATCTGGTCGATGTATGACCGGG
AATGCGGCTACAACATTAGAAATAATCCAGGCTATAACAATAGCTGATAT
TGTTTTTCTTGTGGTTATTCGTGCCCTGTATTTCAAAGGATGGTTGATTC
CCAAATATCTATCGACTGTGATTAACAAAAGGTTGAACTGTGCCACTGTG
AAACATAATACAGCCACGAAAACAGCCAGTTTGCAGGTAAAGATATTCTT
GGTTGCGCCAATCAGGACACTGATATTATACGGTACATTGATGGTGGCTA
CAAGTAGATCTGAGATTGCCAGATTGAAAATCAACAGATTTGTATTTCGT
TGACGTAATTGCTTTGATCGGATGATGATTGCGATAATCAAAAGATTACC
AATGAACGATACCGACAGTATACAGATGTAAACGATAGTGAAAAAGATGT
TTCCAACGCCCCACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069743-exon-scaffold_506-1491911889:366230..367357 | TCONS_00069743-exon-scaffold_506-1491911889:366230..367357 | Clytia hemisphaerica | exon |
| TCONS_00069743-exon-scaffold_506-1510915933:366230..367357 | TCONS_00069743-exon-scaffold_506-1510915933:366230..367357 | Clytia hemisphaerica | exon |
| TCONS_00069743-exon-scaffold_506-1575043694:366230..367357 | TCONS_00069743-exon-scaffold_506-1575043694:366230..367357 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_506 | supercontig | scaffold_506:366230..367357 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00069743 vs. Swiss-Prot (Human)
Match: DRD1 (D(1A) dopamine receptor OS=Homo sapiens GN=DRD1 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.703e-23 Identity = 91/323 (28.17%), Postives = 146/323 (45.20%), Query Frame = 1
Query: 139 GNLLXXXXXXRSKQLRQRNTNLLIFNLAISDLLVATINVPYN-ISVLIGATKNIFTCKLAVFVAVLCFTVAQFNLLLITVDRYLGINHPLKYRARITTRKTISAIVIAWIISNVVAAFPV---IHRPDPSSLVKRNTKICLLADLLAPITLSC-----------FLMVVFYLPVLITIVLYLRILTTIARARDSNIXXXXXXXXXXXXXKKGLAKTENNGQP-----PHSKCKRVANICKHEIKSAKIVLVQIALYVGCMLPITIYDMYVSF-----SQDLTNSDVITQMLLLLAYCSSAINPFLYGIRDPKYRKAIKDLFHC 1032
GN L+ A +IR + LR + TN + +LA+SDLLVA + +P+ ++ + G C + V ++C T + NL +I+VDRY I+ P +Y ++T + I +AW +S +++ PV H+ P+S N A LA +C ++ FY+PV I IV Y RI IA+ + I + K T NG+P P S K K E K K + V + ++V C LP I + + F +Q + + + +S++NP +Y + +RKA L C
Sbjct: 40 GNTLVCAAVIRFRHLRSKVTNFFVISLAVSDLLVAVLVMPWKAVAEIAGFWPFGSFCNIWVAFDIMCSTASILNLCVISVDRYWAISSPFRYERKMTPKAAFILISVAWTLSVLISFIPVQLSWHKAKPTSPSDGN------ATSLAETIDNCDSSLSRTYAISSSVISFYIPVAIMIVTYTRIY-RIAQKQIRRIAALERAAVHA----KNCQTTTGNGKPVECSQPESSFKMSF---KRETKVLKTLSVIMGVFVCCWLPFFILNCILPFCGSGETQPFCIDSNTFDVFVWFGWANSSLNPIIYAF-NADFRKAFSTLLGC 347
The following BLAST results are available for this feature:
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