TCONS_00069725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069725
Unique NameTCONS_00069725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length787

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069725 ID=TCONS_00069725|Name=TCONS_00069725|organism=Clytia hemisphaerica|type=transcript|length=787bp
agaaCAAATAAACTTTAACAATGTAAGATATACTGACAAAACAAAATATG
AATCTTGTAGTGTGTGCACTGGAAGCATCAATCCTTCTTCTCCAATCATA
TCTAACGTCCATAGCTGTTGGTAGAGAAGCATCCTGTGTCGAAGCAAGCT
GATCTATGTAGCTAAGGGTTCAGATCGACAAGTGGATTCCACAAGATTCC
TATGGCTTGCAAGCTTTGATTTGGCTCTCCTGCAGTGTCCAACAAAACCT
CTATCCGACTTATATGATTTGTTATCTATACTATACAGAAATAGTCCACT
ATTCAAATCTTTTACATGGAAGATATCGTTTGAATTCTTTACGATAACTG
CTCATCTTCAAACCATAAACCAATGGATTCAATGCTGGACacaaatacaa
aaacaaaagcaTAACCCTGAATCCAGTGGATTTCACATTAAGAAAAGGGC
CAATGGATATTGAAGAATCGATCAAAAGTCACCAGTAGAAGGTTGGTGTT
TGATAATGTGAAGGTTGTAATAGCTGTAAAAACTTTGATACGACAAACTA
CGAGCAAATGTTGGTGTTCAACAAAACCATAGATTTGGAAAGGTAGGCTT
AGTGCTATAATCAATATATCTGATATTGCCAAATTACTGATTAAGATATT
TGTAAAGGAACGTAGTTTTGGCTTATTTATTGTAGCCATGATGAGTAGAA
GATTACCACAAGTTGAGACAGTTAATATGGCAAGATAAGAACAAATAAAT
ATTACTTCTTCAATTGATCCActcatttttatctttt
Run BLAST on NCBI

transcript from alignment at scaffold_506:368247..369476-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069725 ID=TCONS_00069725|Name=TCONS_00069725|organism=Clytia hemisphaerica|type=transcript|length=1230bp|location=Sequence derived from alignment at scaffold_506:368247..369476- (Clytia hemisphaerica)
AGAACAAATAAACTTTAACAATGTAAGATATACTGACAAAACAAAATATG
AATCTTGTAGTGTGTGCACTGGAAGCATCAATCCTTCTTCTCCAATCATA
TCTAACGTCCATAGCTGTTGGTAGAGAAGCATCCTGTGTCGAAGCAAGCT
GATCTATGTAGCTAAGGGTTCAGATCGACAAGTGGATTCCACAAGATTCC
TATGGCTTGCAAGCTTTGATTTGGCTCTCCTGCAGTGTCCAACAAAACCT
CTATCCGACTTATATGATTTGTTATCTATACTATACAGAAATAGTCCACT
ATTCAAATCTTTTACATGGAAGATATCGTTTGAATTCTTTACGATAACTG
CTCATCTTCAAACCATAAACCAATGGATTCAATGCTGGACACAAATACAA
AAACAAAAGCATAACCCTGAATCCAGTGGATTTCACATTAAGAAAAGGTA
CGAATACTTTTAAAGTGTTTATTAAGATTATTGGTGCCATACATAGCGTG
TATATACCTACAGTCAGGCATATCACCTTAGCGTATTTCAGCTCTCGTAG
AAAAGCCTTCAGTCTTTGATTGTCCTCAGCTGTTTTGTTTTCTTGATGAT
TATGAGCTCTTAAGTCTTTCTTCTTCGATTTATAAATCTTCCTTAACAAC
AATGCATTCAAACACACAATGATCATCCAGACTGGAATAAAATTACCAAG
CTCTATAAAAACTGTATATTCATATTCTAAGACGACTGAAAAATTACATC
TGGTTGATTCCAAATATTGACTGTCGATTTGGCGTTCTCCAATAATTGCA
AAAGGAAAGATACCCAATAACAAACTAAACAACCATGATAATCCAATACC
CAATTTCAATTTCTTAAAAGATGTCGTTTTATATTTCAAGGGCCAATGGA
TATTGAAGAATCGATCAAAAGTCACCAGTAGAAGGTTGGTGTTTGATAAT
GTGAAGGTTGTAATAGCTGTAAAAACTTTGATACGACAAACTACGAGCAA
ATGTTGGTGTTCAACAAAACCATAGATTTGGAAAGGTAGGCTTAGTGCTA
TAATCAATATATCTGATATTGCCAAATTACTGATTAAGATATTTGTAAAG
GAACGTAGTTTTGGCTTATTTATTGTAGCCATGATGAGTAGAAGATTACC
ACAAGTTGAGACAGTTAATATGGCAAGATAAGAACAAATAAATATTACTT
CTTCAATTGATCCACTCATTTTTATCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043415XLOC_043415Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069725-exon-scaffold_506-1575043694:369030..369476TCONS_00069725-exon-scaffold_506-1575043694:369030..369476Clytia hemisphaericaexon
TCONS_00069725-exon-scaffold_506-1575043694:368247..368586TCONS_00069725-exon-scaffold_506-1575043694:368247..368586Clytia hemisphaericaexon
TCONS_00069725-exon-scaffold_506-1510915933:369030..369476TCONS_00069725-exon-scaffold_506-1510915933:369030..369476Clytia hemisphaericaexon
TCONS_00069725-exon-scaffold_506-1510915933:368247..368586TCONS_00069725-exon-scaffold_506-1510915933:368247..368586Clytia hemisphaericaexon
TCONS_00069725-exon-scaffold_506-1491911889:369030..369476TCONS_00069725-exon-scaffold_506-1491911889:369030..369476Clytia hemisphaericaexon
TCONS_00069725-exon-scaffold_506-1491911889:368247..368586TCONS_00069725-exon-scaffold_506-1491911889:368247..368586Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:368247..369476 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.245521	0.299277	0.277991	0.102053	0.496648	0.580077	0.631311	0.443269	0.258619	0.192205	0.435304	0.327031	0.512626	0.318283	0.243976	0.598454	0.507807	0.632815	1.39873	0.782321	0.228871	0.63261	0.633396	0.767798	0.790814	0.353463	0.252493	0.179645	0.204382	0.347054
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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