TCONS_00069723 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069723
Unique NameTCONS_00069723
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069723 ID=TCONS_00069723|Name=TCONS_00069723|organism=Clytia hemisphaerica|type=transcript|length=1404bp
GGGTATACCGTTCTCCTTACTTTTATCTTTTCATCCGGAGCTTCAAGCTg
taaacaaaaacattcaactttcaaaatggcggaaaaTTCGAAGgtagaaa
aatctgaaaatttatcaaCAGACCATCAACTGGGTCATGACAAGGatatg
GAGACAGTTTGGTTAGAAACACATCCAGAATGTCCTGTGTGTCTACAGCC
ATGTTTACAACCAGTTCAAACACCCTGTCTACACGTCTTTTGTTTCCTTT
GTTTGAAAGGATTTGTGTATCGAAGCAAACGATGTGCTCTATGTCGAAGT
GAAGTACCTTTTGAATACTTTCAAAATCCAGTTGTGGTTAAAATCAAGAA
TGGAGAAGCATCTCTAACCTCTTCAACATCAATAGaaatcactgaaaaat
ataattGGTTTTATGAGGGTCGAAACGGTTGGTGGGAATACGATGAAAGA
GCACAGGTTACTTTAGAAGAAGCATTTAAAACAGAGGCTCGCTCTTGTGA
ACTTCTTATCTCTGGTTTTTCATATTTCGTTGATTTTGGTGACATGGTTC
AATTTCGTAAATCACATCCGACTCGCCGGCGTCGCATCAAGAGAGACCGA
ATTGGTGTTGATCGTAAAGGTGTGGCAGGACTAAAAGTCAGTTTATGCAC
AACCTCTTCTGAATCACAAAATTCAGATTCAAGTAAATCTGACACAGACT
TAACTCCATcagataaaataaaagagaaaagcCAATCTGATCTTACACTA
GATAATAATACTAATGACTCGGAGCAAGAACTGGTATCGCAGGCTAGTGG
AAATGTTGATACTCCCAAGCCTGTGTCCTCTACGACATTTGATGAGAATG
AACTTGCAGAACAATTGGATAAGACATTATGATCAGAGTAGTGATTTTGA
TATTGCTTCTATTAACGGCTTGAAATTCCACAGTTTTTTTCGTCTTACTG
GTATTCCCTAGTACTTATTTGACAGGGGTACCTTGATTCAGAACTCTGCT
TTACTAGTTATGGCCTAAATATCgatgtttatgttttttggaAGAACTTT
ATTTGGGGCACTTATCTCGATTTTCATGATTGATTTTCAAGTTGAAACAT
ACAAAAGTGGAATATTGGAGATTTAACAtttctatcaatcattttcaatg
aaataaCTTATCGAAGACTCAATGTTGTACAGTACATTAtgtattttggc
aaaaatttgggtTATTTTTCTGCATGAACGACCTATTTATtgttttttag
aattgtttatttttgttgatattttttttttagtttttaagaaAACTGGT
CACATTTTTTGTCTTGATATGATTGACCtacataaatatttttgatgaaa
tcacCAAAAAGTTACTTCGTGTGCTCtatcaaaatttctaaatgctCATC
TCCT
Run BLAST on NCBI

protein sequence of TCONS_00069723-protein

>TCONS_00069723-protein ID=TCONS_00069723-protein|Name=TCONS_00069723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
GYTVLLTFIFSSGASSCKQKHSTFKMAENSKVEKSENLSTDHQLGHDKDM
ETVWLETHPECPVCLQPCLQPVQTPCLHVFCFLCLKGFVYRSKRCALCRS
EVPFEYFQNPVVVKIKNGEASLTSSTSIEITEKYNWFYEGRNGWWEYDER
AQVTLEEAFKTEARSCELLISGFSYFVDFGDMVQFRKSHPTRRRRIKRDR
IGVDRKGVAGLKVSLCTTSSESQNSDSSKSDTDLTPSDKIKEKSQSDLTL
DNNTNDSEQELVSQASGNVDTPKPVSSTTFDENELAEQLDKTL
Run BLAST on NCBI

transcript from alignment at scaffold_506:312147..321800-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069723 ID=TCONS_00069723|Name=TCONS_00069723|organism=Clytia hemisphaerica|type=transcript|length=9654bp|location=Sequence derived from alignment at scaffold_506:312147..321800- (Clytia hemisphaerica)
GGGTATACCGTTCTCCTTACTTTTATCTTTTCATCCGGAGCTTCAAGCTG
TAAACAAAAACATTCAACTTTCAAAATGGCGGAAAATTCGAAGGTAGAAA
AATCTGAAAATTTATCAACAGACCATCAACTGGGTCATGACAAGGGTATG
TGTTTAAATACTTTAACCTTTTCACTCCCAAGATTTTTAGAAATCGACTT
TTCTTAGATAAGGTTGTTTTTTTTGCCTTGGTTTCTGCCTTTTTTCATGT
GTTGGCCGTTAACTTTTGACTTTGTGGGTTGCTACAAAGTCAAAATAAAT
TATGATAAAGCGACTTCACCACAGCCGTAATCTTTGACATGCATTGGATG
CTAGTATTATATATGTCTTTTAACTCTTGCTCAACACAATGTCATGATGT
TGGATAATTACCGTCAACTGCTCTAACTTTGGATTGGGACAATTGGTCAA
ATCTTAGCAGGATACATGGTTGGTTGATTTCCGGACTGTATTTTCAGTTA
CTGTTTAAATCTCTTTGACAACAAGCGTATTAAGATACTTCAACCAAGTT
TATCAATCAAACTTTGACCACCCCATAATCACAACCAAATGTATTTTTAA
AGCATTTCAAAAGTACTTAATTTAAAGAACCAGACGTCCGCGCTTGATAG
GATCGATCATCGGAACGGCTCGATGACGGATCGATATGTGATCAATGGAT
TACTTAAGGATCCGGATAGGAGATCGATAGAGGATCGATACTCAAGATTT
TTTTAAGCTTATGATTAGTTATCAATTATTTATCGATCTGTCATCGATCT
TTTATCGATCTTATCGACCCTATCGACTCATACTCGATTTACGATCGATA
ACAAATCGATTAACGATCGATGACGAATCGATTAACGATCGATGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCGACAGTCGGGTGCTGTCGGGTGTTT
TGTCGGGTGCTGAAATTTCTAAATTTGCGAAAACACCCGACAAATAGTGC
ACCCGACAGTCGGGTGCTTAAAATTCCTAACTTAGTGAGAACACCCGACA
GTCAACACCCGACACCGACTGATGGGCATTTGGCGGATTAACGCCCTATA
CTATTTCCCGCCATCTTTTCCGATGCCGTGGCGTGGGCGTCAGTCAAATG
ATATGAACATCATCGGCCCTTATAAGGCACTATTTCTCGTCACTGGCGGA
AAAAAGCCGGCGTGTAAATTGGAAAAAGTTTCGGGGGCAGGAAAGTGCCG
AAAATTCTGAGGTAGAGAAAAATAAGCTTCGGCGTAATTAATAAGGGCAA
ATATCACCCAAACTCGAACCCAGTCCCTTAGTTTACTTTTTAAATTTATC
ATTCTGATATAGCGCCCTGTTATCCGTGGAACGATTGTATCGTGTCCATA
AGTAAAATTAAAAAGTGCGATGCAAGTGGCTCTGGGTACGAGTTTGGGCG
CAACCTCGTCCCGTGTATCCTAGGTTTTTTTACGTTACTAACTACTGATC
GATACGATAGAAACGCCATAACTGACATTAACCTTTACCTCTGAGGGCAA
ACCTCTCATGTCAACTAAATCTCGATATCATTCTTTTCATTTAGAGCAGA
GTANGGGCCAACCTCTCATATCAACTAAATCTCGATATCATTCTTTTTAT
TTAGAGTCGCAAATAAGAGAAAATGAATCAAATAGCAAAACAGGTAATCA
TTTTTAATTTGATATTTACATTTTAGTCGTAAAAAAATTGGCGTGTCTTT
CTTTTGATTCTCTACTTTGATCATATCAATGTTTCTATATTTTTAAATTC
CAGCCTGCACTCGATATGGTCAATCTATTTCTCCGTGTTTAGGTTTGAGG
CATGACATCCCGCTCGCTTTTCCCTCTCTTCTTTTCTTCGTTTTTTAGAC
ATTCTGATGACAAAACACGCTGACGTGGTACTGGTTTGTCCAGGTAAGAC
GTTAATTACCTTTAGTATTGTGTTACAAATAGCTTTGTCTCATGTGATAT
TTAGTTTCATAATGACGTAATTTCCATGGCGTTCTAAATGGTTTGTAGAG
ATGCGTAATTCCGCAGAGAGGACTGTTTTTTTTTAAATTAGTTACTCTAT
GGATACTTTTAAAAATATTTTATCAGGCTTATAATCTCAGACATAATGCA
ATGGATATTAATTAAAGCTGTGGATAGACAAGAGATTCAAAATCGTGAAG
GATGGTAGTCTATTAATAAATATTTCTACTTTCTATCTCCTTCAGAAAGA
AAACAGAGGAATGCATTGATGATCAAATGGCCTTAATTTATAATTTATTA
TTTTACATATTTTTAATTGTATGTATTTCAAAGATTGTCTGTAAGACCAT
GTTCAGACGTTACGGTCTCGTATCATTCCGGTATGGTTTCCGTGAGTGTT
TCCGCGATAGTGTTCATATTGGCTTCGGAGCGTTTCGGAGCAAGAAAACG
GAGCAGTTCTGTTCCGATGAAAATAGTGGAGCGAAACCGTTCCGATCTGC
TTTACTTTGTAACGTCTTCTTTTTTTCTTTTTTCAAATTTTGGCGTTATT
CACACTTGTTTCAGAACCGTTTCGTTTTGACAGAACCGTTTATCGTTTTG
GAACGATACGGAACCGTGACGTCTAGAACATGGTCTATATTATAAAAAGG
TTGTTGTCCAATTTTCTTCTTTTGAGCAACACACACGTTGTCCCCAGCCA
TCCAAACAGTTTGTATGCACCATACGTATGTACGCAATGGTTGTATAAGA
ATGGTGGTGGTACGCTAAAAAGATAGAACAAAAAATTCGGCATTCAAGTA
GCTTTTCGGTACAAAACGAAAACCCAGGTGATATATATATATAGCGTCCA
GTTGACGAAGTTACTCAGTCAGCTCAGATAAATTGAACGTCACTTAAGTT
TAATGACACACGATTTTCAGGTAGGTAAAAGAGGGAAAACCTACCTAGAT
AAACTTAATACCCATAATGGATTTTTGCCTACCTAAGTACTAGTGAAGGT
TGCGTTGATTTGGTGACTCATTGATGAAACATCTCTATTTGTCTTCATCG
TCGTGTCGTTGTTTTACAAGTCGCTCATCACGCATGAATGAATAAAAAGA
AGAAAAAAAAACGTTAATCCATGAACTTCTCCCAAGAACATCAAAACCCG
AGAATCAGAAATCACATTTTTTAACTAAAGAGATTGGTTTGACGAGAGAG
TAATTTCGTCAAAAACTCCGCGCTCCCACTACGGGCGGGGTGGCGGTAGT
AAAAAAAAACCCTTTTTTCCGCCCTTCGGAAATCGCCACCCGCCCGTTAC
ATGTCGGGTGCTGTTAAGAGCGTCAAAGATATAGCCCCCGACAAAGTGCA
CCCGACTGTCGGGTGTTAAAATTTCTAACTTCAAGCACCCGACAACAGCA
CCCGACTGTCGGGTGCACCGGCAGGGTCGTATCTTCCATCGATCTCCTAT
CCGGATCGTTAAGTAGTAATCCATCGATCACATATCGATCCGTCATCGAG
CCGTGCCGATGATCGATCCTATCGAGCGCGGACGTCTGGGAAGTAATAAC
AATTTAATCACACTCACGCTGCTCATCATATCTTTGATGCCATTTTTTGT
GTTTTTTTTTTCTACAGAGACTTTTTTCAAGCGTGTGTGATTATTGACAT
GTCAAAGTTGGTCTAATATTGACATCTCTCATCTAATTCCGACACCCTTC
TTTAGAGAAAGGAATAATATGAAAGCTTGAATCACTGATTGAAAAAGGAT
TATCCTCTCTGACCACTAAGCAAAGAAAAACAGTTTCAACCTTTCTATAA
ATTTCAGCTGATAAAAAGGGTGTCAGGATTAGTGGAGGGGTGTTGACATA
AGACCAAGTTATGGTACAGATCTCACAAGAAGAACGGAAGAACGGACTTT
TTTTATATCTGTGTTTGGACGCTTGTGCAGTTAGTCACACTAGCGTCCCG
CCAAAATGCATATCAAAGATTAATGCTGCGAAAACGCTATATTGTTTACT
TGACTCTCAAGCAAAAAAATGCGCCGCAAAACTTCTAAAGGGATTGATGA
AAAAATAACCCAGCGCTTTTTAATGAAATTAACATTTTCAAAAACTTTGA
GAAATTGCCTAAAATTTGAGAAATTGCCTAAAATTTGAGCTATAGATGAA
AAAATTTGAGCCAAGCCAACCTTGAAAACTAATTTGAAGATCAACTTCCC
ACCTAGATCCGCGCACCGCCGGATAGGCTATCTCCCGGAAATTTTGCCGG
ACCTCAAACAATGACCCATTTACATGTGCGGAATTGTTTTTACTTTAGCG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTGATTCAGG
TAACTCTCATCCTTGTTGTTGAAATGTATCCTGTAGATGACTGATGTTGT
TTTTTCTGAAAGCTTAATTTCCTAGTGTGACTAACTGTTGTGCATTTACG
CGTTTTCTCTTAAAGATTTGAAACCTCCAGAGTCATTTGATTTGAATTAA
TGAACGAGGTATTAAAAAATACACAATTTCTCTTTCGCACCGAGTAGGCT
TTTAAATTGAAATATGAAAAAAATCTGTTGTGGAACACACGCGAATGTCT
GGAATGAAGAAGACCAAATTAGTGGCAAAACGATGGAGCGTTTGATGTCC
CTCGCGCGGCAAGTTACACACTCGTTTTTTGTTAATCCTATTGGGCAATA
GGCAGTGTAGCTGGAACCTCGATATTCCAGGATTAGAAAAAGCTATATAT
ACCTGTTATCTTTTTTCTTTAAAGAATCAACAAGCCATCAACATAGATAC
ATTTTTTCTTCTTTCTTTTATTGAAATTCTTTTGCACACGGTACAAGAAA
GTTAAATGTCTCTTCTGATTGGCTAATTAAAAAAGAACAATAGTGAAGCT
GCACAGCTCAGCAAAAAAAGTTGTAAAGTTTCAAGTCTTGTTGCGCTCAA
AGCGACAGCCTTTGAAAGCTTAATTTATGTAATTCGTGCAATAAATAGGC
CGCGTGCCTTGTTCGCCGACCATAAAATGCTGAGTGGGTAGCGGCCTTAA
CAATCAAATAGAATGGGCTTTCCTCTGATGTAAACAAACCTCAAGTCCTC
TCCTGAAAATTGACATTGGGTGTACTGTATTTCCAATAATTAAAGACTAA
CTTGAAAACATCAAGAGTGAAATGTAGCTAAATGCTTAGAACGCCTTGCG
ATTTTTTTTTCAAAACTGTAGATTTGACCCCAGCTCGAACCACCAAAGTC
TCTTGTCACTGAGTCTGACTGAGTCCGGCACGCTATCAATGTGCTATCGA
GCCGATATGAAAATACAAAATTTGAAAATGTTTATAAAAGACACTACTAC
ATATACGGGTGAACAGACCTCACGGGCTAGGCTAACTGATCAATTACATA
GATTACTCAAAAACATGCACGTAACACCAAGGCAAATCTGTGCAATTTTA
TCTGAATGACTAAGGCAACATGCTTTAATTTTTCAATGTGATCATCCCCC
CCCCTTCAACAGCTAACTAAATAAAGTACTCGATAAGGAACTTTGAGAGT
GAAATTCTCTGGAAAAATAAGGGACTCTAGGCTCGGAGCTAGCTCGGAGC
CAAGTTAAGGTTCCTTATTATATTGAAAAAGCGTATACTTAAAAACGATA
CGGAACTCGTGAGAGTGCTTTTTAAACCTTTGTCTTTGGTTATCTTCACA
AGGTTTTGTTTATCTTTGCAACTTAGTTCTCGCTTTCGGCCTTTTGTCTA
TTCGTTTTTAGCCTCCCACCTTCGATTTCAGCCTCCCGACTCCCGCCTCC
CAGCTTTCGTTTTCAGCCTCCCGTCTCCCACTTTCGTTTTCAGCCTCCTG
CCTCCCGGCTCCCACTTTTCCTGTATGCCTTTTTTCTTTTGTTTTTGCAA
AAGCTCCAGAAATGAAAATACCATAACTTCGTGTAATGCCAAAATACCTT
GTCTAATTCCTGCATAGCAACTATCTGGTCTTTAAAATGTTTATGATAAA
ACCTTCTATTACTAAACCTGAATAAGAACTGAATAAGATCTGTTATAAAA
AAAAACTCTAATACTCATAACTACTTTCAGCTTGGAAAAACCATGTGCTT
TGTTTTTTATATAAATAAACCCTCATATTCTTTTAACGCCCCCTGACAGC
TGACAATTAGGCTAGGCTAAACTTACTTCTTTTCTCTTTCCTATTCCAAC
AATACAATGCTTTATATAGTTGAACATAATGCACATTGATAGAATATTTC
CCATGCATTGTATTATTATATATTGAAATCTTCAATAAAAACGAAAGTGG
TCTCTTCTTCTTGGTGGCTCCATCGGAAAGCCTCCCTCTTTTAAATTTCA
GCCGCCTCCTATGATGAAGGTTTTAATGACTGGCCCTAATTTTTTACACT
AATGGCTTTTTGATAATGACAAACAGTCATAATAACTTCATTTGTTTCAA
TCATTGATTCCAAGGGTTGAATTCTTTCTTATAATATTAATAGTTCTCTA
AACAAAAATGGGAATTTGATGCAAGCGTTATTTTTTCAAAGAATTATTTC
TGATTAGATGCAAGCACTTTACCTTCATATTCGATTGGATACTTCTTTTT
AAACAATCACACGGCAATTGTTTGAGTGAGCAAAATAAAACAAAATATTT
GGCGTCTTCACTAGTGTTTGCGATTGAACAAAATAAAACAATCTACTTTC
CAGTGGTGTATTTTTATTTTTTCGATTCCTTCATGTTTGCCAATCCGTGG
AGTCTTCATATATACCATAGGAAAGCTCAATAAACTGGTTACAGTAACTT
AGTTTTTAAGTTTTGCAAATCCCCAAGATAGTTATTTAGAAGGAAACGCA
ACGGTCTATTGAATAACAAATTACTCCACGTGCATTACTTTCCCTCAGCC
AGTAAAACGTGATAAATCGTCTTGTTTTTAGGTAACTTATGTGGAGTAAT
TAGCTATTCAAAAAACCGCTGCGTTCTCCTTAATGACTATTGGAAACACT
CATTTTTTCCCGCTTTTCTCTGTCATCTTTTATTGGTTTCTTTTGTTGAT
TGCTTGTGTCACCGATAACTCACGTGTCATTTCTTGAAATGGAAACACAC
AGTTTTTCCCTAGCTAACTTTGCAGACGAGATAGTTGCCTACACGAAGCT
ACGGAAAAGGGATAGCGCTCAGATAAACCATTCACCCAGTGCTTATTCTT
TATGAAGATATTTGGTATAATCTGGATCGCTTCTTTTATCAGGCAATTTC
ATTAGTTATTAACATGTCACGTAATCAAACCAAATAAAAGATTTTTTGAG
ATTAAATGCAATATCCTTATTAGGCAATATTACTGCTGTTTTGAACCAGG
ATCAGGAACATGAAATGTACTAAATGCACTAAATCCAGGCAACGCTGTAC
CTCTGTTACATTGCGTGGCTCCATAATCCAAAACAAGTCTACATATTTTT
CTTTGGTTTTCTTTTTTAGATATGGAGACAGTTTGGTTAGAAACACATCC
AGAATGTCCTGTGTGTCTACAGCCATGTTTACAACCAGTTCAAACACCCT
GTCTACACGTCTTTTGTTTCCTTTGTTTGAAAGGATTTGTGTATCGAAGC
AAACGATGTGCTCTATGTCGAAGTGAAGTACCTTTTGAATACTTTCAAAA
TCCAGTTGTGGTAGGTATTCTTTAGATTTTGAATACTGATTCCCTGCCTT
TAGTTATTATTATTATTGTTATTACTCTATTTGGTAATGAAGGTCTGTAC
AAAATGCAATTGAAAATTTACTGATGTGGACCTACTATAAATAAAAATAA
TTTTATGTGTCACTTTAGCCCTTGAAACATGAAAAAATCACTTAAAGATT
CTAAAGTTTTATATATACTTTAATAATGTTTTGATTTTTAACGTCAGAAA
ATGGCAGGCACATACGTTGCTGCTACTGGCTTTTTTAAATCTGAAATAGT
ACCGAGGATCAATCTTTGCCTTAGATTTTGTTCAATATAAACACTTTTTT
GTTAGACATCCAGTATATTTTGTAGAAATAATACAGCTTTATCAAGTTTT
TTAGTTTTCTTTATTCTTTTTTTCAACTCAAGCTGCAAATGGATATTCTT
GGGTAGTTTTTTTCACTGCTCTTATTTAATTCATTCCTTTCACATATTTT
GTAATCAAAATTAAATTTGGGGAATTTTCCTTTCAGGTTAAAATCAAGAA
TGGAGAAGCATCTCTAACCTCTTCAACATCAATAGAAATCACTGAAAAAT
ATAATTGGTTTTATGAGGGTCGAAACGGTTGGTGGGAATACGATGAAAGA
GCACAGGTTACTTTAGAAGAAGCATTTAAAACAGAGGCTCGCTCTTGTGA
ACTTCTTATCTCTGGTTTTTCATATTTCGTTGATTTTGGTGACATGGTTC
AATTTCGTAAATCACATCCGACTCGCCGGCGTCGCATCAAGAGAGACCGA
ATTGGTGTTGATCGTAAAGGTGTGGCAGGACTAAAAGTCAGTTTATGCAC
AACCTCTTCTGAATCACAAAATTCAGATTCAAGTAAATCTGACACAGACT
TAACTCCATCAGATAAAATAAAAGAGAAAAGCCAATCTGATCTTACACTA
GATAATAATACTAATGACTCGGAGCAAGAACTGGTATCGCAGGCTAGTGG
AAATGTTGATACTCCCAAGCCTGTGTCCTCTACGACATTTGATGAGAATG
AACTTGCAGAACAATTGGATAAGACATTATGATCAGAGTAGTGATTTTGA
TATTGCTTCTATTAACGGCTTGAAATTCCACAGTTTTTTTCGTCTTACTG
GTATTCCCTAGTACTTATTTGACAGGGGTACCTTGATTCAGAACTCTGCT
TTACTAGTTATGGCCTAAATATCGATGTTTATGTTTTTTGGAAGAACTTT
ATTTGGGGCACTTATCTCGATTTTCATGATTGATTTTCAAGTTGAAACAT
ACAAAAGTGGAATATTGGAGATTTAACATTTCTATCAATCATTTTCAATG
AAATAACTTATCGAAGACTCAATGTTGTACAGTACATTATGTATTTTGGC
AAAAATTTGGGTTATTTTTCTGCATGAACGACCTATTTATTGTTTTTTAG
AATTGTTTATTTTTGTTGATATTTTTTTTTTAGTTTTTAAGAAAACTGGT
CACATTTTTTGTCTTGATATGATTGACCTACATAAATATTTTTGATGAAA
TCACCAAAAAGTTACTTCGTGTGCTCTATCAAAATTTCTAAATGCTCATC
TCCT

Coding sequence (CDS) from alignment at scaffold_506:312147..321800-

>TCONS_00069723 ID=TCONS_00069723|Name=TCONS_00069723|organism=Clytia hemisphaerica|type=CDS|length=2646bp|location=Sequence derived from alignment at scaffold_506:312147..321800- (Clytia hemisphaerica)
GTTAAAATCAAGAATGGAGAAGCATCTCTAACCTCTTCAACATCAATAGA
AATCACTGAAAAATATAATTGGTTTTATGAGGGTCGAAACGGTTGGTGGG
AATACGATGAAAGAGCACAGGTTACTTTAGAAGAAGCATTTAAAACAGAG
GCTCGCTCTTGTGAACTTCTTATCTCTGGTTTTTCATATTTCGTTGATTT
TGGTGACATGGTTCAATTTCGTAAATCACATCCGACTCGCCGGCGTCGCA
TCAAGAGAGACCGAATTGGTGTTGATCGTAAAGGTGTGGCAGGACTAAAA
GTCAGTTTATGCACAACCTCTTCTGAATCACAAAATTCAGATTCAAGTAA
ATCTGACACAGACTTAACTCCATCAGATAAAATAAAAGAGAAAAGCCAAT
CTGATCTTACACTAGATAATAATACTAATGACTCGGAGCAAGAACTGGTA
TCGCAGGCTAGTGGAAATGTTGATACTCCCAAGCCTGTGTCCTCTACGAC
ATTTGATGAGAATGAACTTGCAGAACAATTGGATAAGACATTATGAATAT
GGAGACAGTTTGGTTAGAAACACATCCAGAATGTCCTGTGTGTCTACAGC
CATGTTTACAACCAGTTCAAACACCCTGTCTACACGTCTTTTGTTTCCTT
TGTTTGAAAGGATTTGTGTATCGAAGCAAACGATGTGCTCTATGTCGAAG
TGAAGTACCTTTTGAATACTTTCAAAATCCAGTTGTGGGGTATACCGTTC
TCCTTACTTTTATCTTTTCATCCGGAGCTTCAAGCTGTAAACAAAAACAT
TCAACTTTCAAAATGGCGGAAAATTCGAAGGTAGAAAAATCTGAAAATTT
ATCAACAGACCATCAACTGGGTCATGACAAGGGTTAAAATCAAGAATGGA
GAAGCATCTCTAACCTCTTCAACATCAATAGAAATCACTGAAAAATATAA
TTGGTTTTATGAGGGTCGAAACGGTTGGTGGGAATACGATGAAAGAGCAC
AGGTTACTTTAGAAGAAGCATTTAAAACAGAGGCTCGCTCTTGTGAACTT
CTTATCTCTGGTTTTTCATATTTCGTTGATTTTGGTGACATGGTTCAATT
TCGTAAATCACATCCGACTCGCCGGCGTCGCATCAAGAGAGACCGAATTG
GTGTTGATCGTAAAGGTGTGGCAGGACTAAAAGTCAGTTTATGCACAACC
TCTTCTGAATCACAAAATTCAGATTCAAGTAAATCTGACACAGACTTAAC
TCCATCAGATAAAATAAAAGAGAAAAGCCAATCTGATCTTACACTAGATA
ATAATACTAATGACTCGGAGCAAGAACTGGTATCGCAGGCTAGTGGAAAT
GTTGATACTCCCAAGCCTGTGTCCTCTACGACATTTGATGAGAATGAACT
TGCAGAACAATTGGATAAGACATTATGAATATGGAGACAGTTTGGTTAGA
AACACATCCAGAATGTCCTGTGTGTCTACAGCCATGTTTACAACCAGTTC
AAACACCCTGTCTACACGTCTTTTGTTTCCTTTGTTTGAAAGGATTTGTG
TATCGAAGCAAACGATGTGCTCTATGTCGAAGTGAAGTACCTTTTGAATA
CTTTCAAAATCCAGTTGTGGGGTATACCGTTCTCCTTACTTTTATCTTTT
CATCCGGAGCTTCAAGCTGTAAACAAAAACATTCAACTTTCAAAATGGCG
GAAAATTCGAAGGTAGAAAAATCTGAAAATTTATCAACAGACCATCAACT
GGGTCATGACAAGGGTTAAAATCAAGAATGGAGAAGCATCTCTAACCTCT
TCAACATCAATAGAAATCACTGAAAAATATAATTGGTTTTATGAGGGTCG
AAACGGTTGGTGGGAATACGATGAAAGAGCACAGGTTACTTTAGAAGAAG
CATTTAAAACAGAGGCTCGCTCTTGTGAACTTCTTATCTCTGGTTTTTCA
TATTTCGTTGATTTTGGTGACATGGTTCAATTTCGTAAATCACATCCGAC
TCGCCGGCGTCGCATCAAGAGAGACCGAATTGGTGTTGATCGTAAAGGTG
TGGCAGGACTAAAAGTCAGTTTATGCACAACCTCTTCTGAATCACAAAAT
TCAGATTCAAGTAAATCTGACACAGACTTAACTCCATCAGATAAAATAAA
AGAGAAAAGCCAATCTGATCTTACACTAGATAATAATACTAATGACTCGG
AGCAAGAACTGGTATCGCAGGCTAGTGGAAATGTTGATACTCCCAAGCCT
GTGTCCTCTACGACATTTGATGAGAATGAACTTGCAGAACAATTGGATAA
GACATTATGAATATGGAGACAGTTTGGTTAGAAACACATCCAGAATGTCC
TGTGTGTCTACAGCCATGTTTACAACCAGTTCAAACACCCTGTCTACACG
TCTTTTGTTTCCTTTGTTTGAAAGGATTTGTGTATCGAAGCAAACGATGT
GCTCTATGTCGAAGTGAAGTACCTTTTGAATACTTTCAAAATCCAGTTGT
GGGGTATACCGTTCTCCTTACTTTTATCTTTTCATCCGGAGCTTCAAGCT
GTAAACAAAAACATTCAACTTTCAAAATGGCGGAAAATTCGAAGGTAGAA
AAATCTGAAAATTTATCAACAGACCATCAACTGGGTCATGACAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043413XLOC_043413Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069723-proteinTCONS_00069723-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069723-exon-scaffold_506-1575043694:321656..321800TCONS_00069723-exon-scaffold_506-1575043694:321656..321800Clytia hemisphaericaexon
TCONS_00069723-exon-scaffold_506-1575043694:313741..313931TCONS_00069723-exon-scaffold_506-1575043694:313741..313931Clytia hemisphaericaexon
TCONS_00069723-exon-scaffold_506-1575043694:312147..313214TCONS_00069723-exon-scaffold_506-1575043694:312147..313214Clytia hemisphaericaexon
TCONS_00069723-exon-scaffold_506-1510915933:321656..321800TCONS_00069723-exon-scaffold_506-1510915933:321656..321800Clytia hemisphaericaexon
TCONS_00069723-exon-scaffold_506-1510915933:313741..313931TCONS_00069723-exon-scaffold_506-1510915933:313741..313931Clytia hemisphaericaexon
TCONS_00069723-exon-scaffold_506-1510915933:312147..313214TCONS_00069723-exon-scaffold_506-1510915933:312147..313214Clytia hemisphaericaexon
TCONS_00069723-exon-scaffold_506-1491911889:321656..321800TCONS_00069723-exon-scaffold_506-1491911889:321656..321800Clytia hemisphaericaexon
TCONS_00069723-exon-scaffold_506-1491911889:313741..313931TCONS_00069723-exon-scaffold_506-1491911889:313741..313931Clytia hemisphaericaexon
TCONS_00069723-exon-scaffold_506-1491911889:312147..313214TCONS_00069723-exon-scaffold_506-1491911889:312147..313214Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:312147..321800 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.165	23.3924	41.9177	47.3571	29.1466	21.5451	19.5808	19.4748	13.5847	14.0379	10.9185	8.46257	7.26612	7.62795	5.42831	7.03753	8.46907	9.89123	5.42824	6.01051	7.34836	6.38448	26.8577	25.4079	9.40319	11.3791	20.8836	19.4636	19.1451	21.5537
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018123WWE-dom_subgr
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR004170WWE-dom
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00069723 vs. Swiss-Prot (Human)
Match: RN146 (E3 ubiquitin-protein ligase RNF146 OS=Homo sapiens GN=RNF146 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 4.098e-40
Identity = 79/188 (42.02%), Postives = 117/188 (62.23%), Query Frame = 1 
Query:   76 MAENSKVEKSENLSTDHQLGHDKDMETVWLETHPECPVCLQPCLQPVQTPCLHVFCFLCLKGFVYRSKRCALCRSEVPFEYFQNPVVVKIKNGEASLXXXXXXXXXXKYNWFYEGRNGWWEYDERAQVTLEEAFKTEARSCELLISGFSYFVDFGDMVQFRKSHPTXXXXXXXXXXXXXXXGVAGLKV 639
            MA   +++ S N+   ++  ++    T    T PEC +CLQ C+ PV  PC HVFC+LC+KG  +  KRCALCR E+P ++   P ++  +  +A+           +Y W+YEGRNGWW+YDER    LE+AF    ++ E+LI+GF Y  D  +MVQ+R++   RRR+IKRD I + +KGVAGL++
Sbjct:    2 MAGCGEIDHSINMLPTNRKANESCSNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDKPTLLSPEELKAA------SRGNGEYAWYYEGRNGWWQYDERTSRELEDAFSKGKKNTEMLIAGFLYVADLENMVQYRRNEHGRRRKIKRDIIDIPKKGVAGLRL 183
The following BLAST results are available for this feature:
BLAST of TCONS_00069723 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1464.098e-4042.02E3 ubiquitin-protein ligase RNF146 OS=Homo sapiens... [more]
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