TCONS_00069723-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069723-protein
Unique NameTCONS_00069723-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069723-protein ID=TCONS_00069723-protein|Name=TCONS_00069723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
GYTVLLTFIFSSGASSCKQKHSTFKMAENSKVEKSENLSTDHQLGHDKDM
ETVWLETHPECPVCLQPCLQPVQTPCLHVFCFLCLKGFVYRSKRCALCRS
EVPFEYFQNPVVVKIKNGEASLTSSTSIEITEKYNWFYEGRNGWWEYDER
AQVTLEEAFKTEARSCELLISGFSYFVDFGDMVQFRKSHPTRRRRIKRDR
IGVDRKGVAGLKVSLCTTSSESQNSDSSKSDTDLTPSDKIKEKSQSDLTL
DNNTNDSEQELVSQASGNVDTPKPVSSTTFDENELAEQLDKTL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043413XLOC_043413Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069723TCONS_00069723Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018123WWE-dom_subgr
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR004170WWE-dom
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018123WWE domain, subgroupSMARTSM00678deltexcoord: 131..206
e-value: 1.9E-17
score: 74.0
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 61..98
e-value: 2.2E-5
score: 33.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 61..99
score: 10.881
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 60..102
e-value: 5.76987E-8
score: 47.0552
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 17..271
e-value: 5.2E-15
score: 55.0
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 61..98
e-value: 1.1E-4
score: 21.9
IPR004170WWE domainPFAMPF02825WWEcoord: 134..198
e-value: 5.7E-17
score: 62.0
IPR004170WWE domainPROSITEPS50918WWEcoord: 121..198
score: 21.283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..293
NoneNo IPR availableSUPERFAMILY117839WWE domaincoord: 104..212
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 60..106
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 76..85

Blast
[Close]
BLAST of TCONS_00069723-protein vs. Swiss-Prot (Human)
Match: RN146 (E3 ubiquitin-protein ligase RNF146 OS=Homo sapiens GN=RNF146 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.140e-53
Identity = 79/188 (42.02%), Postives = 118/188 (62.77%), Query Frame = 0 
Query:   26 MAENSKVEKSENLSTDHQLGHDKDMETVWLETHPECPVCLQPCLQPVQTPCLHVFCFLCLKGFVYRSKRCALCRSEVPFEYFQNPVVVKIKNGEASLTSSTSIEITEKYNWFYEGRNGWWEYDERAQVTLEEAFKTEARSCELLISGFSYFVDFGDMVQFRKSHPTRRRRIKRDRIGVDRKGVAGLKV 213
            MA   +++ S N+   ++  ++    T    T PEC +CLQ C+ PV  PC HVFC+LC+KG  +  KRCALCR E+P ++   P ++  +  +A+   +       +Y W+YEGRNGWW+YDER    LE+AF    ++ E+LI+GF Y  D  +MVQ+R++   RRR+IKRD I + +KGVAGL++
Sbjct:    2 MAGCGEIDHSINMLPTNRKANESCSNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDKPTLLSPEELKAASRGNG------EYAWYYEGRNGWWQYDERTSRELEDAFSKGKKNTEMLIAGFLYVADLENMVQYRRNEHGRRRKIKRDIIDIPKKGVAGLRL 183
The following BLAST results are available for this feature:
BLAST of TCONS_00069723-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1463.140e-5342.02E3 ubiquitin-protein ligase RNF146 OS=Homo sapiens... [more]
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