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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069717 ID=TCONS_00069717|Name=TCONS_00069717|organism=Clytia hemisphaerica|type=transcript|length=1806bp
GTGAACGTCTCGGCTTATTTCACTTCAGCTTTTTTTATACTGTAAACGTG
CACTATAGAAAGTGCGGTTAACCGCAAAAAGGGGAGAGAGGAGATTTTCA
ATATAATAttaatcacaaaaaaaaatcttttttgacgttCCATCGTATAA
GACATCCTGAACGATCAACTCGACCCCCTGATCAGATTACGACTCATTGA
CATTTAAACAAGAGGTGAACCCGCTGATTTTTGTTATTCTTGTCAAATCA
TCATCGTTGTCGTCATGAAGTACTGCATTTTCAtcattgttttattactt
gtggttttGATAACAGAATGTGCCCCTATGATGGAAGGTTGCAAACGCTG
GAATGGATGTGTCACTTCTAAACCAAAAAAGTCAGCAAAAGcgggaagaa
gaaaaaaaacaaatataaaaaacaatggTGTAGTTGGTATTCCAAAAGAT
ATGGCTAGACATTtttTGAGGAAGTTGATAGAATCGAAAGATTTTATGAA
CAAATTTACCAACAAGCAAGGTCAGACCTCTCCAGATGATTATGATATGG
GCCGAAAAATTGTACGAAAATTCAGAATCTCATTACGACAGCAATGGCAT
CAAACTTAAAGATTGTTGGACACTTTTTTAGTGGAAGGTggagaaaatat
caaattgaTGACGAAAGAATCTAATAAATCAATGTCAGGGAGACATTCAA
CAAAATTCCTTGCAAAACGGATGGAAAAATCAGGCATACACGTACAAGTG
AACGGGAATTTTCCCACGATTTGTGTATATAATGTTCTGTGGGAGAAAAG
AGAAGTTGGAAATAGGCTAATTAACCTCTCTCATTTTAAATGATGACTGT
GCAGATCAGGAAGAAAAATCTTGAGAATAATGATGATGACTAAAAAGTGA
GGACAATTAAGATTTGAAACTGTTTACTCTTTGGATAAATAGTTGCTTTG
GCGAGAGATTGTTGCTGTCTTGTTAATTTATCAGCTAGATATCAACCTAC
CAATCATACATCGTTTGTGTTGGCGTCAAAAATGGTCAACAACAGCTACA
CCTGGCGTCTGTAATTACTAATTTGAAAGCTTTGTTATGGTGAAACCCTG
GTGTGgtatcattttaaaaatagtATCAACCTTTGATCCCCTATTGCGCT
AATACGTCTTAAGATACCACAATACTACAAACGACGAACGCTGGCATATA
AACCTTCCAATTGCATACACGGATGAAGAAAAATGGAAAGAgacgaaaat
aaaaacaatatttcTAATTCCTATAATCATATCTTTGAAGGATCAACAAT
CTGAGAATAACGCATTTCAATATCAAACCCTGTTGGACATTTTAAACAAT
AACTTTTAATCCAGTACAAAATCATCATCATAAATGACGTTTCAATATCA
ATTCAAGAATCACCAATGAGATACTTACCTTGCAAAAAACTTCATTAGAT
TTCAATGTGTTATAGACGCCAGACAGCGGTATCATGTCTTTGTACGGGAT
GATCAGGGTGTTAGCAAATAGATCATGATACTTCCGTTCATCATCAAATT
CACAGACACAAAAATCTCTTTAATGTTTGTTTTAATATAAAAGTGAAATT
CCATAACTATCCCTTGGTGGGCAGCCGATCGAAATACGGCTTCGCATTTA
TTTTACAGACCCTGAGCAAAAATCCGGAATCAAAAATATCGATGCGAAAA
TTCTATATGGATAGTAttataaaattgtaatatttatttatttttcagga
ttttaatTAGGACAAAGTTAtaacacaaaacaaaaaacgacatattttgC
AATCAG Run BLAST on NCBI protein sequence of TCONS_00069717-protein >TCONS_00069717-protein ID=TCONS_00069717-protein|Name=TCONS_00069717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MKYCIFIIVLLLVVLITECAPMMEGCKRWNGCVTSKPKKSAKAGRRKKTN
IKNNGVVGIPKDMARHFLRKLIESKDFMNKFTNKQGQTSPDDYDMGRKIV
RKFRISLRQQWHQT Run BLAST on NCBI transcript from alignment at scaffold_506:269650..271981- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069717 ID=TCONS_00069717|Name=TCONS_00069717|organism=Clytia hemisphaerica|type=transcript|length=2332bp|location=Sequence derived from alignment at scaffold_506:269650..271981- (Clytia hemisphaerica)
GTGAACGTCTCGGCTTATTTCACTTCAGCTTTTTTTATACTGTAAACGTG
CACTATAGAAAGTGCGGTTAACCGCAAAAAGGGGAGAGAGGAGATTTTCA
ATATAATATTAATCACAAAAAAAAATCTTTTTTGACGTTCCATCGTATAA
GACATCCTGAACGATCAACTCGACCCCCTGATCAGATTACGACTCATTGA
CATTTAAACAAGAGGTGAACCCGCTGATTTTTGTTATTCTTGTCAAATCA
TCATCGTTGTCGTCATGAAGTACTGCATTTTCATCATTGTTTTATTACTT
GTGGTTTTGATAACAGAATGTGCCCCTATGATGGAAGGTTGCAAACGCTG
GAATGGATGTGTCACTTCTAAACCAAAAAAGTCAGCAAAAGCGGGAAGAA
GAAAAAAAACAAATATAAAAAACAATGGTGTAGTTGGTATTCCAAAAGAT
ATGGCTAGACATTGTAAGTTCTACTATCAGCTTTTTTGTTTTTGAATGTA
GGTTTGGCAGTTCTGTCACTATTGATGAGTGAGAAAGGGGCTGCTATTTT
AAGAACTGGCATTTTTTAGAAAATATCTCAGAAGGGTTCGTGAGTATGTA
TTTGTACTAATAGTATGTATACCAATGTGCCTTTCTGGATAATTGAAGAG
TGGTAGTCTTATTATTGATTTGATCGTATAAAATCAAAAATTTCTGACGA
GACTTAGAATATTGCTTGTATACCAGTAAACTATGTATGAAGTAAACCTT
CATTCTTTCTTGAGCTCGGCGTTGTATTCTAGAGAAACTAAACATCTGTA
CAGCTGACTAATTTCGAACTTTTCTTATTTGTTCGAATTATAGAGAGATT
TGAATTATAGAAAGTGATTTAAAAGGGTTTTCCTTGACAGGGACTAAAAA
TAAGTTCGAAAAGTTCGAATAAGAGATAGTGTTTGGGTGATTTTTTGCTT
ATTATTAATTCACCGATGCTTTCTTCTTTTTTGTTTCAGTTTTGAGGAAG
TTGATAGAATCGAAAGATTTTATGAACAAATTTACCAACAAGCAAGGTCA
GACCTCTCCAGATGATTATGATATGGGCCGAAAAATTGTACGAAAATTCA
GAATCTCATTACGACAGCAATGGCATCAAACTTAAAGATTGTTGGACACT
TTTTTAGTGGAAGGTGGAGAAAATATCAAATTGATGACGAAAGAATCTAA
TAAATCAATGTCAGGGAGACATTCAACAAAATTCCTTGCAAAACGGATGG
AAAAATCAGGCATACACGTACAAGTGAACGGGAATTTTCCCACGATTTGT
GTATATAATGTTCTGTGGGAGAAAAGAGAAGTTGGAAATAGGCTAATTAA
CCTCTCTCATTTTAAATGATGACTGTGCAGATCAGGAAGAAAAATCTTGA
GAATAATGATGATGACTAAAAAGTGAGGACAATTAAGATTTGAAACTGTT
TACTCTTTGGATAAATAGTTGCTTTGGCGAGAGATTGTTGCTGTCTTGTT
AATTTATCAGCTAGATATCAACCTACCAATCATACATCGTTTGTGTTGGC
GTCAAAAATGGTCAACAACAGCTACACCTGGCGTCTGTAATTACTAATTT
GAAAGCTTTGTTATGGTGAAACCCTGGTGTGGTATCATTTTAAAAATAGT
ATCAACCTTTGATCCCCTATTGCGCTAATACGTCTTAAGATACCACAATA
CTACAAACGACGAACGCTGGCATATAAACCTTCCAATTGCATACACGGAT
GAAGAAAAATGGAAAGAGACGAAAATAAAAACAATATTTCTAATTCCTAT
AATCATATCTTTGAAGGATCAACAATCTGAGAATAACGCATTTCAATATC
AAACCCTGTTGGACATTTTAAACAATAACTTTTAATCCAGTACAAAATCA
TCATCATAAATGACGTTTCAATATCAATTCAAGAATCACCAATGAGATAC
TTACCTTGCAAAAAACTTCATTAGATTTCAATGTGTTATAGACGCCAGAC
AGCGGTATCATGTCTTTGTACGGGATGATCAGGGTGTTAGCAAATAGATC
ATGATACTTCCGTTCATCATCAAATTCACAGACACAAAAATCTCTTTAAT
GTTTGTTTTAATATAAAAGTGAAATTCCATAACTATCCCTTGGTGGGCAG
CCGATCGAAATACGGCTTCGCATTTATTTTACAGACCCTGAGCAAAAATC
CGGAATCAAAAATATCGATGCGAAAATTCTATATGGATAGTATTATAAAA
TTGTAATATTTATTTATTTTTCAGGATTTTAATTAGGACAAAGTTATAAC
ACAAAACAAAAAACGACATATTTTGCAATCAG Coding sequence (CDS) from alignment at scaffold_506:269650..271981- >TCONS_00069717 ID=TCONS_00069717|Name=TCONS_00069717|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_506:269650..271981- (Clytia hemisphaerica)
TTTTGAGGAAGTTGATAGAATCGAAAGATTTTATGAACAAATTTACCAAC
AAGCAAGGTCAGACCTCTCCAGATGATTATGATATGGGCCGAAAAATTGT
ACGAAAATTCAGAATCTCATTACGACAGCAATGGCATCAAACTTAAATGA
AGTACTGCATTTTCATCATTGTTTTATTACTTGTGGTTTTGATAACAGAA
TGTGCCCCTATGATGGAAGGTTGCAAACGCTGGAATGGATGTGTCACTTC
TAAACCAAAAAAGTCAGCAAAAGCGGGAAGAAGAAAAAAAACAAATATAA
AAAACAATGGTGTAGTTGGTATTCCAAAAGATATGGCTAGACATTTTTTG
AGGAAGTTGATAGAATCGAAAGATTTTATGAACAAATTTACCAACAAGCA
AGGTCAGACCTCTCCAGATGATTATGATATGGGCCGAAAAATTGTACGAA
AATTCAGAATCTCATTACGACAGCAATGGCATCAAACTTAAATGAAGTAC
TGCATTTTCATCATTGTTTTATTACTTGTGGTTTTGATAACAGAATGTGC
CCCTATGATGGAAGGTTGCAAACGCTGGAATGGATGTGTCACTTCTAAAC
CAAAAAAGTCAGCAAAAGCGGGAAGAAGAAAAAAAACAAATATAAAAAAC
AATGGTGTAGTTGGTATTCCAAAAGATATGGCTAGACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069717-exon-scaffold_506-1575043694:271519..271981 | TCONS_00069717-exon-scaffold_506-1575043694:271519..271981 | Clytia hemisphaerica | exon |
| TCONS_00069717-exon-scaffold_506-1575043694:269650..270992 | TCONS_00069717-exon-scaffold_506-1575043694:269650..270992 | Clytia hemisphaerica | exon |
| TCONS_00069717-exon-scaffold_506-1510915933:271519..271981 | TCONS_00069717-exon-scaffold_506-1510915933:271519..271981 | Clytia hemisphaerica | exon |
| TCONS_00069717-exon-scaffold_506-1510915933:269650..270992 | TCONS_00069717-exon-scaffold_506-1510915933:269650..270992 | Clytia hemisphaerica | exon |
| TCONS_00069717-exon-scaffold_506-1491911889:271519..271981 | TCONS_00069717-exon-scaffold_506-1491911889:271519..271981 | Clytia hemisphaerica | exon |
| TCONS_00069717-exon-scaffold_506-1491911889:269650..270992 | TCONS_00069717-exon-scaffold_506-1491911889:269650..270992 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_506 | supercontig | scaffold_506:269650..271981 - |
Blast
The following BLAST results are available for this feature:
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