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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069709 ID=TCONS_00069709|Name=TCONS_00069709|organism=Clytia hemisphaerica|type=transcript|length=1924bp
caggGCCACGCTCATGTTTTACGTCTATTGGATCTACCTGTACTGGAGAA
TTTACAACGAAACGAAatgttcaaaaatcaaaaagaccgCAAAAAAAATC
GGGAAATGACATCTGCCGGAACTAGCCGGAGTGGATATTACTCAGCTAAA
TCAACTGATTTGAACTCTAAACCAACTTCTCCGGGTGGGTTGTTACCAGG
ATATAACACACCCGCCCGATTAACGCCAGTCTCACCCATATCAGAAACCA
CTGTAAACCAACAGAGAAGGTCTATCAAGAAAAGAGATTCAAACCATTCA
TTGAGTTCCGGATACTCATCTGATGCTGGCCGGACTTCACCGAGACAAAA
CTGGCAGAATTTGCGTAAGAAAGCAATCAAGAAGATTAAAACGCCGAAAT
TTGTGAATCAGTTATCAGAAATCCCCTCGTGGCAAAGAATAGCAGGAGCA
GAAAGCTGCAAAGGAAACCTTGGACTGGGAGCATATATCAGGATCGATAC
TCTAGGTCATGGTGATGTCTTTGGATTCAAATATGCAGCAAAAGAAGAAA
ACCGCCACGTCGACTGCTTGAAGAAATTTGTCCTCCTTAGTGCTGGATGT
GACGTCATCAGAATATCCAAACCAAACGTTCAAAAAATGACAGATAATGA
AACGATATCAAAAATAGAACAATTCGAACCGGGTTACCCGTCAGACGAGA
TTCTTTTCGAGGTTTATCGACGATATCATGACTGGAGAACGTTTAGAGAA
AAGTTGGTGGATGATATTGCGTTGTACCAAACCAATGTGACCAAAGCCAT
CAATAACCGTTCTTTGTCCATACCGAAAATTCCACGCATTGAAAATAAAG
CGTATTCCCGGATTCAATCTCCTGTTGAACATTGGAATATGCTTAAAGAA
GAGGGACACTTAAAGCAGGAAGAAAACTCCCAATGGAAGGTGACACCAAT
TCCATCAACTGAAAAAGATATGGACGAAGTGATCAAGAGATTACGTGCCG
CCCCTTTCCTTCAAGACCAACTTTTGAAAGCTAAAGGAAGTCAAAGACAA
CTTATTCTGACGCACGGCGGTGATCGTGTTAACCGTTTCCCGAAAGTTGT
GACCATAAAACAATGATAACGTAATTGCtttcttaaatttgaaaaagatt
taacaAAGAGGTGTGAGGAATATCGTTTCAAGTCTNATTGAAAATAAAGC
GTATTCCCGGATTCAATCTCCTGTTGAACATTGGAATATGCTTAAAGAAG
AGGGACACTTAAAGCAGGAAGAAAACTCCCAATGGAAGGTGACACCAATT
CCATCAACTGAAAAAGATATGGACGAAGTGATCAAGAGATTACGTGCCGC
CCCTTTCCTTCAAGACCAACTTTTGAAAGCTAAAGGAAGTCAAAGACAAC
TTATTCTGACGCACGGCGGTGATCGTGTTAACCGTTTCCCGAAAGTTGTG
ACCATAAAACAATGATAACGTAATTGCtttcttaaatttgaaaaagattt
aacaAAGAGGTGGAGGAATATCGTTTCAAGTCTTTGGCTTTTCGAAATGA
CCACCAAAAGACGATATCGATAATCCTTTTGAAATAAAGATTACCATTCC
TgctgaaaacaatttttttaaatttgtaaatatttatGTACAAAGCCGTT
GCACGGATTGCACTCCATAATGAGACCATATttgcacgtgacggttccgt
ttcgctccaaaACGGAATGAatccattctattggttaaaagtgacgtaac
acttgaatgtaactaatagaatggcttcattttgtttcggaaccgtcacg
tgcaaACATGGTACATACATACtatcttaaagtttttttttgaaagagtt
CTATTTTCTTTGTAAATACACGCGATactatttattaaaatttttgtgAT
ATCGTCAATATTTTTGTATAAAGG Run BLAST on NCBI transcript from alignment at scaffold_506:203132..207773- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069709 ID=TCONS_00069709|Name=TCONS_00069709|organism=Clytia hemisphaerica|type=transcript|length=4642bp|location=Sequence derived from alignment at scaffold_506:203132..207773- (Clytia hemisphaerica)
CAGGGCCACGCTCATGTTTTACGTCTATTGGATCTACCTGTACTGGAGAA
TTTACAACGAAACGAAATGTTCAAAAATCAAAAAGACCGCAAAAAAAATC
GGGAAATGACATCTGCCGGAACTAGCCGGAGTGGATATTACTCAGCTAAA
TCAACTGATTTGAACTCTAAACCAACTTCTCCGGGTGGGTTGTTACCAGG
ATATAACACACCCGCCCGATTAACGCCAGTCTCACCCATATCAGAAACCA
CTGTAAACCAACAGAGAAGGTCTATCAAGAAAAGAGATTCAAACCATTCA
TTGAGTTCCGGATACTCATCTGATGCTGGCCGGACTTCACCGAGACAAAA
CTGGCAGAATTTGCGTAAGAAAGCAATCAAGAAGATTAAAACGCCGAAAT
TTGTGAATCAGTTATCAGAAATCCCCTCGTGGCAAAGAATAGCAGGAGCA
GAAAGCTGCAAAGGAAACCTTGGACTGGGAGCATATATCAGGATCGATAC
TCTAGGTCATGGTGATGTCTTTGTAAGTCAAAAACGTTGTTTTAGCTTCC
ATCTAATGTTATTCAGATGCTATGAACGTTAGCTGGACGTTAAAGTAACC
TTGTTCTCATGATATGATTACATGGTCAGTTTGTTTTCGTTTTAAATTTC
ACTTGTTATCCTTACTTGATGAAGGAGAAGTCATATGAGTCTAAATACTC
ATTAGTTACTAGGTATGAAAATTTCAAGGTACCCTTTATGAAGTGATGGA
GCCAATTTTTTTGGGGAAAATAGTCGCCCACCATGGTTGAGCGGCGAAGA
AAATCTTTCACTTTTTGCACCTATTAAACATCTTAAAACGTTTTCTAATT
GGGTAACAACATTTTTGTTATGACTTTAGAAAAGAATTAGTCTGCTAAAA
AAGGATCCATGGCGATCCGACTGCAATTGTAACCAATATACTTTGTATAT
TCTATAGCTATTGAAGAATATATTTGATTACGAATGAAAACCTGATCTCT
TTACACCCAGGGATTCAAATATGCAGCAAAAGAAGAAAACCGCCACGTCG
ACTGCTTGAAGAAATTTGTCCTCCTTAGTGCTGGATGTGACGTCATCAGA
ATATCCAAACCAAACGTTCAAAAAATGACAGATAATGAAACGATATCAAA
AATAGAACAATTCGAACCGGGTTACCCGTCAGACGAGATTCTTTTCGAGG
TTTATCGACGATATCATGACTGGAGAACGTTTAGAGAAAAGTTGGTGGAT
GATATTGCGTTGTACCAAACCAATGTGACCAAAGCCATCAATAACCGTTC
TTTGTCCATACCGAAAATTCCACGCATTGAAAATAAAGCGTATTCCCGGA
TTCAATCTCCTGTTGAACATTGGAATATGCTTAAAGAAGAGGGACACTTA
AAGCAGGAAGGTTCGTAAAATACTTGTGTATCAAATCTGAGAGATTGAAA
ATTAATGGTCTTCAAATATATCGAGAATTTTGTCATTTTAACGTTTTTTC
AGAATTTAAAGTTCGGGCGAGATTTGCGATTTTAGCATTTCCAATTATTT
CATTTGATATTTCGATTTTGGAGAGGTGTTCAGTGGCTTTTAGACTATAT
TCCAACCTTATTGGAACAATTTCAAGCTTTTGAACCCTGGAATCCTAAGC
TCTTAAGTCTCATTTTAGAACTCTACATTCCAAACTAACTTAGAGCACTT
AAAACATTCGTAGTGTTTAAAATTTTGCAGGGATCCCCCACTTTAACTCG
TACATCTTATCCATGAATGTTAAGGTCAAATTTGGGTTAGTTGGAAATCT
CTTTACTTCTAATATTTTCATATCCGATACATCTTCTGTTGAAACTTAAT
TTAGGCGTACAAACTTTCGTGAGCATAAATGTTCGCAATTTTCGCAAATT
TTAGCCCTTTTCGCGAAAGTAAATGTCTTTGAAAATTCATTCTAGGGCCA
TTCGCTAAAATTCGTGCTCGCGAAAAATTCTCTCTAACATAGAAAATCTG
TAAAAGTTCTAACCTAAATAAAATGTAAGATTTATTGAACTTGTTAGCCT
GTCAAAGCCTCATAAGTAAAAAAACAAAAGTTACAATCAAATTCAAGAAG
TATTTGTCCCTCTAAGCCATTTTATCGTGTGTAAATGTTCACTTAATGTC
TCGATTCGTGAAAAGTAACTGTCGTAAATGCCGCGATTTTTCGACCACGT
GAAAGTTTCTGTTTGTGAAAGTTTGTATACCTCAAGTAAGTTTGTCATCC
TTTGCTCAGAGTTTACATCGACACTGTTCCAAACATCAGATATTTCTCCC
TTGATCTACTTGATGTCAGGCTTCAGCTCATCGCTCCCATTTGTGTATAG
TGCATTCCTTTTGTCATTTATTCTTTGTCCTATTGTTATTTTTTAGTCCT
GATTTTTTTGTATTTTTTCTTCCACATATTGTTATATATTGGGTTTTTTG
AATTACAAATTGTCATGGTTAGTCGCTATAGTTTGTATTTTCTTCAATGT
GTATATGACTTCATTATATTTCTAGAAAACTCCCAATGGAAGGTGACACC
AATTCCATCAACTGAAAAAGATATGGACGAAGTGATCAAGAGATTACGTG
CCGCCCCTTTCCTTCAAGACCAACTTTTGAAAGCTAAAGGAAGTCAAAGA
CAACTTATTCTGACGCACGGCGGTGATCGTGTTAACCGTTTCCCGAAAGT
TGTGACCATAAAACAATGATAACGTAATTGCTTTCTTAAATTTGAAAAAG
ATTTAACAAAGAGGTGTGAGGAATATCGTTTCAAGTCTNATTGAAAATAA
AGCGTATTCCCGGATTCAATCTCCTGTTGAACATTGGAATATGCTTAAAG
AAGAGGGACACTTAAAGCAGGAAGGTTCGTAAAATACTTGTGTATCAAAT
CTGAGAGATTGAAAATTAATGGTCTTCAAATATATCGAGAATTTTGTCAT
TTTAACGTTTTTTCAGAATTTAAAGTTCGGGCGAGATTTGCGATTTTAGC
ATTTCCAATTATTTCATTTGATATTTCGATTTTGGAGAGGTGTTCAGTGG
CTTTTAGACTATATTCCAACCTTATTGGAACAATTTCAAGCTTTTGAACC
CTGGAATCCTAAGCTCTTAAGTCTCATTTTAGAACTCTACATTCCAAACT
AACTTAGAGCACTTAAAACATTCGTAGTGTTTAAAATTTTGCAGGGATCC
CCCACTTTAACTCGTACATCTTATCCATGAATGTTAAGGTCAAATTTGGG
TTAGTTGGAAATCTCTTTACTTCTAATATTTTCATATCCGATACATCTTC
TGTTGAAACTTAATTTAGGCGTACAAACTTTCGTGAGCATAAATGTTCGC
AATTCTCGCAAATTTTAGCCCTTTTCGCGAAAGTAAATGTCTTTGAAAAT
TCATTCTAGGGCCATTCGCTAAAATTCATGCTCGCGAAAAATTCTCTCTA
ACATAGAAAATCTGTAAAAGTTCTAACCTAAATAAAATGTAAGATTTATT
GAACTTGTTAGCCTGTCAAAGCCTCATAAGTAAAAAAACAAAAGTTACAA
TCAAATTCAAGAAGTATTTGTCCCTCTAAGCCATTTTATCGTGTGTAAAT
GTTCACTTAATGTCTCGATTCGTGAAAAGTAACTGTCGTAAATGCCGCGA
TTTTTCGACCACGTGAAAGTTTCTGTTTGTGAAAGTTTGTATACCTCAAG
TAAGTTTGTCATCCTTTGCTCAGAGTTTACATCGACACTGTTCCAAACAT
CAGATATTTCTCCCTTGATCTACTTGATGTCAGGCTTCAGCTCATCGCTC
CCATTTGTGTATAGTGCATTCCTTTTGTCATTTATTCTTTGTCCTATTGT
TATTTTTTAGTCCTGATTTTTTTGTATTTTTTCTTCCACATATTGTTATA
TATTGGGTTTTTTGAATTACAAATTGTCATGGTTAGTCGCTATAGTTTGT
ATTTTCTTCAATGTGTATATGACTTCATTATATTTCTAGAAAACTCCCAA
TGGAAGGTGACACCAATTCCATCAACTGAAAAAGATATGGACGAAGTGAT
CAAGAGATTACGTGCCGCCCCTTTCCTTCAAGACCAACTTTTGAAAGCTA
AAGGAAGTCAAAGACAACTTATTCTGACGCACGGCGGTGATCGTGTTAAC
CGTTTCCCGAAAGTTGTGACCATAAAACAATGATAACGTAATTGCTTTCT
TAAATTTGAAAAAGATTTAACAAAGAGGTGGAGGAATATCGTTTCAAGTC
TTTGGCTTTTCGAAATGACCACCAAAAGACGATATCGATAATCCTTTTGA
AATAAAGATTACCATTCCTGCTGAAAACAATTTTTTTAAATTTGTAAATA
TTTATGTACAAAGCCGTTGCACGGATTGCACTCCATAATGAGACCATATT
TGCACGTGACGGTTCCGTTTCGCTCCAAAACGGAATGAATCCATTCTATT
GGTTAAAAGTGACGTAACACTTGAATGTAACTAATAGAATGGCTTCATTT
TGTTTCGGAACCGTCACGTGCAAACATGGTACATACATACTATCTTAAAG
TTTTTTTTTGAAAGAGTTCTATTTTCTTTGTAAATACACGCGATACTATT
TATTAAAATTTTTGTGATATCGTCAATATTTTTGTATAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069709-exon-scaffold_506-1575043694:207252..207773 | TCONS_00069709-exon-scaffold_506-1575043694:207252..207773 | Clytia hemisphaerica | exon |
| TCONS_00069709-exon-scaffold_506-1575043694:206364..206763 | TCONS_00069709-exon-scaffold_506-1575043694:206364..206763 | Clytia hemisphaerica | exon |
| TCONS_00069709-exon-scaffold_506-1575043694:204900..205248 | TCONS_00069709-exon-scaffold_506-1575043694:204900..205248 | Clytia hemisphaerica | exon |
| TCONS_00069709-exon-scaffold_506-1575043694:203132..203784 | TCONS_00069709-exon-scaffold_506-1575043694:203132..203784 | Clytia hemisphaerica | exon |
| TCONS_00069709-exon-scaffold_506-1510915933:207252..207773 | TCONS_00069709-exon-scaffold_506-1510915933:207252..207773 | Clytia hemisphaerica | exon |
| TCONS_00069709-exon-scaffold_506-1510915933:206364..206763 | TCONS_00069709-exon-scaffold_506-1510915933:206364..206763 | Clytia hemisphaerica | exon |
| TCONS_00069709-exon-scaffold_506-1510915933:204900..205248 | TCONS_00069709-exon-scaffold_506-1510915933:204900..205248 | Clytia hemisphaerica | exon |
| TCONS_00069709-exon-scaffold_506-1510915933:203132..203784 | TCONS_00069709-exon-scaffold_506-1510915933:203132..203784 | Clytia hemisphaerica | exon |
| TCONS_00069709-exon-scaffold_506-1491911889:207252..207773 | TCONS_00069709-exon-scaffold_506-1491911889:207252..207773 | Clytia hemisphaerica | exon |
| TCONS_00069709-exon-scaffold_506-1491911889:206364..206763 | TCONS_00069709-exon-scaffold_506-1491911889:206364..206763 | Clytia hemisphaerica | exon |
| TCONS_00069709-exon-scaffold_506-1491911889:204900..205248 | TCONS_00069709-exon-scaffold_506-1491911889:204900..205248 | Clytia hemisphaerica | exon |
| TCONS_00069709-exon-scaffold_506-1491911889:203132..203784 | TCONS_00069709-exon-scaffold_506-1491911889:203132..203784 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_506 | supercontig | scaffold_506:203132..207773 - |
Blast
The following BLAST results are available for this feature:
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