TCONS_00069704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069704
Unique NameTCONS_00069704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069704 ID=TCONS_00069704|Name=TCONS_00069704|organism=Clytia hemisphaerica|type=transcript|length=690bp
AAATTCTTCATTGCAATAATGAAGATCTTATTGTTTTTAGTTCTATCTCT
TCTCAGTATATACACTCAGgTGGTGCTTGGCGGCAAGACTTGCCAAAGAC
TTGTTTCAGCAGCTAAAGTTGGTGGAACCTTTATTTCAAGAAGTGAAACT
GTAACCTGTCAAAGTTCAGAAGTATGCTGTGCAAGCGGGTGTTGCAAACC
ACTCAACATTACTTGGGAGACATGgCTTGGTATAGGTATCGGTGCATTCA
TCATTGTGTGTGCTCTGGTTGGCTATTGTTATTGGAAACAGAAAAggaaa
gataaagaaaatccAAAAGCAAACCAATGGCAAACTTTGAAAGATGAACC
ACAGATGTTTTACCATATCTGATCAAAAATCGTTGTGAAGTCACATTTCC
TCatctatttaatttttcaaattttttaactcgcaattttgaattatata
aagttcttgtaaaaatttgtaaacTTGTAAAAGTTGTAAATATTCTTTTT
GACGTCGAAAATCTATCGccgactctttttaaaaagcattgatgacattt
ttgaattgtgttttcaacgacggaaataaaaatatcaactttgaacttca
tccaagatcttggattgtcgtcatggttacttttctctgcgttgattgcg
cgctgaatagaatctggattggatGGCACAGGTAAATATA
Run BLAST on NCBI

protein sequence of TCONS_00069704-protein

>TCONS_00069704-protein ID=TCONS_00069704-protein|Name=TCONS_00069704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
KFFIAIMKILLFLVLSLLSIYTQVVLGGKTCQRLVSAAKVGGTFISRSET
VTCQSSEVCCASGCCKPLNITWETWLGIGIGAFIIVCALVGYCYWKQKRK
DKENPKANQWQTLKDEPQMFYHI
Run BLAST on NCBI

transcript from alignment at scaffold_506:98888..100781-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069704 ID=TCONS_00069704|Name=TCONS_00069704|organism=Clytia hemisphaerica|type=transcript|length=1894bp|location=Sequence derived from alignment at scaffold_506:98888..100781- (Clytia hemisphaerica)
AAATTCTTCATTGCAATAATGAAGATCTTATTGTTTTTAGTTCTATCTCT
TCTCAGTATATACACTCAGGTAAGCTACCTTTCATTCTTTACGCTTTTTT
TACCCGGGGGGGGGGGGGGTACTTAGGCAAATGGAGGTACGGGTATGTGC
CGCCCTTAAGGGTGATTTTCTTGGACCTTCAAACAAATTTGATAAGAAAA
CAGAGCCTAAAAATGCCTAAAAATTTTAGAACAATGCCTAGAACAGAGAC
TAAAGTGGCTGAATTTTAAGCAAANTCCTCTAAGGGTCGTGAAAATCACA
ATGTCTAATTTCCGTCCCCCAAAACCAAAAACTCTAATATTTTTCCCTAA
AAAGGGTAAATTTTAGGAATATTTTCGGTTTCTTTCCTTAATTTTAAAAT
TGATTGAGAAAAAATCAATATGTTGTTGCTTTCATTTATCTTTACATTAA
TTTTAGACCCTAAAATTTCAATTTTTTTAAATTCGGGGCGGTAATATTTT
CTCCTAAATATCTTCGTGTACTATTTATGGTCATGGCTTTAGTCTTTTCT
TCTAGGTGGTGCTTGGCGGCAAGACTTGCCAAAGACTTGTTTCAGCAGCT
AAAGTTGGTGGAACCTTTATTTCAAGAAGTGAAACTGTAACGTAAGTAAA
TTTCCACACGAAAAGGTAATTATAAGTGTAAAGATATTCTTTGCATTTGT
CACTTGTGTGGCATTTTTTTAATGAACCGGAGTTTCCCTTGCAAAATCTC
TAAACGTCAATCTTGTCAAATCTAAAAGCAACAAAGTTACCCTCTGGACT
TTTTCACCACTTTTACATAACCTAGATTTACATTCGTGCATATTTTAAAA
CTTAATCCTTTTATCTTTTTCACAGCTGTCAAAGTTCAGAAGTATGCTGT
GCAAGCGGGTGTTGCAAACCACTCAACATTACTTGGGAGACATGGTAAGG
AAAGCCCTTGCCCAAGTCCTTAAACAGTTCTTTTTTCTCGAATCAAGCCT
AAGCTTTGTCATATGAGAAATCTGTAAACAGTAACTGCAATAACGACAAA
GACTGGTAATTTTCGAGGAGATAAAATAAACATTGTAGATAAACATCCGC
AAAGCTATCTTTACTGTTACTTTTTGAATAATTTCCTGGATGAATATTCC
TTTGGTTTTTGCATACCTTCAGCACCCTGAATAGTTTTCACGTTTTGTGA
ACAAATCTGTGAACAAATTTTGGGAGAAGCAATGCAATCTATATTTAAAT
ATAGTATAGAAGAATCAAGGATAAGTGGAGCAGTCCAAGGAGAAAGAGTG
GCACGCCTTCCTCTTCCTTTTGCTAGACAGCTATCGAAAGAAGAACCTTC
GGGTAGCCTCCAACTGCGATCGAAGCCTTCCCAACAGCTAACACCCTGTT
TAAACGGTAACTTATTTTGTTTATTTAGGCTTGGTATAGGTATCGGTGCA
TTCATCATTGTGTGTGCTCTGGTTGGCTATTGTTATTGGAAACAGAAAAG
GAAAGATAAAGAAAATCCAAAAGCAAACCAATGGCAAACTTTGAAAGATG
AACCACAGATGTTTTACCATATCTGATCAAAAATCGTTGTGAAGTCACAT
TTCCTCATCTATTTAATTTTTCAAATTTTTTAACTCGCAATTTTGAATTA
TATAAAGTTCTTGTAAAAATTTGTAAACTTGTAAAAGTTGTAAATATTCT
TTTTGACGTCGAAAATCTATCGCCGACTCTTTTTAAAAAGCATTGATGAC
ATTTTTGAATTGTGTTTTCAACGACGGAAATAAAAATATCAACTTTGAAC
TTCATCCAAGATCTTGGATTGTCGTCATGGTTACTTTTCTCTGCGTTGAT
TGCGCGCTGAATAGAATCTGGATTGGATGGCACAGGTAAATATA

Coding sequence (CDS) from alignment at scaffold_506:98888..100781-

>TCONS_00069704 ID=TCONS_00069704|Name=TCONS_00069704|organism=Clytia hemisphaerica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_506:98888..100781- (Clytia hemisphaerica)
GCTTGGTATAGGTATCGGTGCATTCATCATTGTGTGTGCTCTGGTTGGCT
ATTGTTATTGGAAACAGAAAAGGAAAGATAAAGAAAATCCAAAAGCAAAC
CAATGGCAAACTTTGAAAGATGAACCACAGATGTTTTACCATATCTGACT
GTCAAAGTTCAGAAGTATGCTGTGCAAGCGGGTGTTGCAAACCACTCAAC
ATTACTTGGGAGACATGGTGGTGCTTGGCGGCAAGACTTGCCAAAGACTT
GTTTCAGCAGCTAAAGTTGGTGGAACCTTTATTTCAAGAAGTGAAACTGT
AACAAATTCTTCATTGCAATAATGAAGATCTTATTGTTTTTAGTTCTATC
TCTTCTCAGTATATACACTCAGGCTTGGTATAGGTATCGGTGCATTCATC
ATTGTGTGTGCTCTGGTTGGCTATTGTTATTGGAAACAGAAAAGGAAAGA
TAAAGAAAATCCAAAAGCAAACCAATGGCAAACTTTGAAAGATGAACCAC
AGATGTTTTACCATATCTGACTGTCAAAGTTCAGAAGTATGCTGTGCAAG
CGGGTGTTGCAAACCACTCAACATTACTTGGGAGACATGGTGGTGCTTGG
CGGCAAGACTTGCCAAAGACTTGTTTCAGCAGCTAAAGTTGGTGGAACCT
TTATTTCAAGAAGTGAAACTGTAACAAATTCTTCATTGCAATAATGAAGA
TCTTATTGTTTTTAGTTCTATCTCTTCTCAGTATATACACTCAGGCTTGG
TATAGGTATCGGTGCATTCATCATTGTGTGTGCTCTGGTTGGCTATTGTT
ATTGGAAACAGAAAAGGAAAGATAAAGAAAATCCAAAAGCAAACCAATGG
CAAACTTTGAAAGATGAACCACAGATGTTTTACCATATCTGACTGTCAAA
GTTCAGAAGTATGCTGTGCAAGCGGGTGTTGCAAACCACTCAACATTACT
TGGGAGACATGGTGGTGCTTGGCGGCAAGACTTGCCAAAGACTTGTTTCA
GCAGCTAAAGTTGGTGGAACCTTTATTTCAAGAAGTGAAACTGTAACAAA
TTCTTCATTGCAATAATGAAGATCTTATTGTTTTTAGTTCTATCTCTTCT
CAGTATATACACTCAGGCTTGGTATAGGTATCGGTGCATTCATCATTGTG
TGTGCTCTGGTTGGCTATTGTTATTGGAAACAGAAAAGGAAAGATAAAGA
AAATCCAAAAGCAAACCAATGGCAAACTTTGAAAGATGAACCACAGATGT
TTTACCATATCTGACTGTCAAAGTTCAGAAGTATGCTGTGCAAGCGGGTG
TTGCAAACCACTCAACATTACTTGGGAGACATGGTGGTGCTTGGCGGCAA
GACTTGCCAAAGACTTGTTTCAGCAGCTAAAGTTGGTGGAACCTTTATTT
CAAGAAGTGAAACTGTAACAAATTCTTCATTGCAATAATGAAGATCTTAT
TGTTTTTAGTTCTATCTCTTCTCAGTATATACACTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043405XLOC_043405Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069704-exon-scaffold_506-1575043694:100713..100781TCONS_00069704-exon-scaffold_506-1575043694:100713..100781Clytia hemisphaericaexon
TCONS_00069704-exon-scaffold_506-1575043694:100141..100226TCONS_00069704-exon-scaffold_506-1575043694:100141..100226Clytia hemisphaericaexon
TCONS_00069704-exon-scaffold_506-1575043694:99838..99906TCONS_00069704-exon-scaffold_506-1575043694:99838..99906Clytia hemisphaericaexon
TCONS_00069704-exon-scaffold_506-1575043694:98888..99353TCONS_00069704-exon-scaffold_506-1575043694:98888..99353Clytia hemisphaericaexon
TCONS_00069704-exon-scaffold_506-1510915933:100713..100781TCONS_00069704-exon-scaffold_506-1510915933:100713..100781Clytia hemisphaericaexon
TCONS_00069704-exon-scaffold_506-1510915933:100141..100226TCONS_00069704-exon-scaffold_506-1510915933:100141..100226Clytia hemisphaericaexon
TCONS_00069704-exon-scaffold_506-1510915933:99838..99906TCONS_00069704-exon-scaffold_506-1510915933:99838..99906Clytia hemisphaericaexon
TCONS_00069704-exon-scaffold_506-1510915933:98888..99353TCONS_00069704-exon-scaffold_506-1510915933:98888..99353Clytia hemisphaericaexon
TCONS_00069704-exon-scaffold_506-1491911889:100713..100781TCONS_00069704-exon-scaffold_506-1491911889:100713..100781Clytia hemisphaericaexon
TCONS_00069704-exon-scaffold_506-1491911889:100141..100226TCONS_00069704-exon-scaffold_506-1491911889:100141..100226Clytia hemisphaericaexon
TCONS_00069704-exon-scaffold_506-1491911889:99838..99906TCONS_00069704-exon-scaffold_506-1491911889:99838..99906Clytia hemisphaericaexon
TCONS_00069704-exon-scaffold_506-1491911889:98888..99353TCONS_00069704-exon-scaffold_506-1491911889:98888..99353Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069704-proteinTCONS_00069704-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:98888..100781 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.270008	0.310052	0.204102	0.242767	0.00924448	0	0.256174	0.177554	0.338343	0.916703	1.27036	0.70344	12.2771	9.85846	2.09403	1.5884	2.68207	3.11743	30.343	36.5745	10.0997	11.8227	2.97883	6.93167	4.22166	6.45555	2.40149	1.72294	1.31574	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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