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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069693 ID=TCONS_00069693|Name=TCONS_00069693|organism=Clytia hemisphaerica|type=transcript|length=2027bp
tgagaattttctaGAATATTACAAAATACAAGAACATAATTCAAACGTTG
ACAATAATAAGCCATTAGCTCTGGCAAATCTGTGGTAATGAGTTGTGACT
GTACAATCATCACCAATTTTGTTGATGGTTATAGTAATAAATCACCACCT
GTCGAGAAACTACGTCGTGGTTTTGGTTTCAAGAAGAGATATTATACACT
TGGGCTGGTTGATATTTGTATGAGATGCTGTAGAAATTTGGAGAGTCTGG
GAAGGAAATTGGTTTTCTCATATTACATAGATGAAACACAACAACAATTA
AAAGGTCGATTCGAGGTTGAAAATAGTAAACTGGAACGAGTATACGAAAT
CGAAGAATTACCGAAAAGTTgttttgacagaaaatacattttgaaatGGA
CGATGAAAACATATGACCGGGTATTATATTTGATATGGGATGACGAAGGA
GAAGGGAAACAATTGTTGAATGTTTTTAAAGATTACAGAGAGAATCGAAG
AAGAAGTCGAAGCAGACAATCAAGTGATACGTCAGAGGCTTCAAGTCACG
GTGGAAGTTCAAGACACAGCTCAAATGGTTCAAGATAAAAAATATCACAA
TTTGATTTTACTGAAAGGTAGAGAGAGTACCTTCAAAAATTTCTATTCGN
AATAtcacattttgattttaaccGAAAGGTAGAGAGAGTAACTTAAAAAA
ATTGCTATTCGTGgtatttatgacgtaatgtctGATTTGAAAGCACCCAA
ACAGTCGGGTCGTTTGCatctaattttgaatttgaacaaTAAAACTATTG
GCAAACATTACGTATGAATAGCATGGCTTTCTTGGTAAACACTGGTAAGC
AACATTATCCACAAATTtatgtttaaccctttaagtgccacggtcctttt
tttctagttttttttaaagaaaatcgctagttccaactttaaaggcttat
atctccggatctagaaggagttagaagctcgttcatAGTTTGTTGGATAG
Cttagtctcttctttctttcaaactcaaaactcaaactgggcattacagg
agggcttcgccatcttatatagcccatgtctgatatacaAGACATTGGCa
tttaaagggttaaagaaaatttcGCACGAAAAGAGGACAGCAACACATTC
ACGACATAAAAATTACAattattttgctattttatactcagtttttgagc
atttttatcgcttaaaataaaattctaaaattcgtGAAAGTTGTATCCGC
TGAATTCGTTCCAAAagtaaaattcgcgaaatttcgcgattttgcagctt
cgtgaaagtttctgctcttAAAGTATACGGAATTTTATTTGTATGAatct
ttttctgttttgtttttcgggTACACTGTATACCACACCCAGCTGGACTC
CTAAATTAGGAGGAAGGTCTCTCCATATTAGTTTctatttttaagagttt
tataAGTAAAGAACATTATTTATATAAATTGCTCACTGGTTTAGTATAAt
ataccttttcgaccgtagtcgcacggtcgggcgcgtgccacttatttatt
taattatccccctaaactcgatccaagcCTGCGCGACAATTGGCGAAAAG
GTGTATACAGTAATTCTTGTAGAGaatgatgtttaaaaaaaggaaaaaaa
tgaattttatattCTTTATATCATTCCACGGTTTGTAAATAACGTAAATA
TCAATATTTATTGACTATGTATTCACTTTTATATTAAAATTTTCTACGTC
CTTTTAAAAAGAATTGTGAAGTTTGGAGATTCTCTAGCTTCTCTAGCTAG
TAGAAAGTTGGTAGATAGTGTGACCTGACTAACAGAATAATAGACTCGAG
AAAGTATGTGAGTGCAATATCGAAAATACTTCGATTGAATTAGCTAGGGG
GGGCTTTTATTCATAACATTTTGTGATTCTATGAAACCGAAACTACATTT
CAATCTTCAAAAGTTTCCccttaaagattttgtttttagataagagtgat
atcgtttgcttgctcgtcaatttttta Run BLAST on NCBI protein sequence of TCONS_00069693-protein >TCONS_00069693-protein ID=TCONS_00069693-protein|Name=TCONS_00069693-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MSCDCTIITNFVDGYSNKSPPVEKLRRGFGFKKRYYTLGLVDICMRCCRN
LESLGRKLVFSYYIDETQQQLKGRFEVENSKLERVYEIEELPKSCFDRKY
ILKWTMKTYDRVLYLIWDDEGEGKQLLNVFKDYRENRRRSRSRQSSDTSE
ASSHGGSSRHSSNGSR Run BLAST on NCBI transcript from alignment at scaffold_506:337874..343874+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069693 ID=TCONS_00069693|Name=TCONS_00069693|organism=Clytia hemisphaerica|type=transcript|length=6001bp|location=Sequence derived from alignment at scaffold_506:337874..343874+ (Clytia hemisphaerica)
tgagaattttctaGAATATTACAAAATACAAGAACATAATTCAAACGTTG
ACAATAATAAGCCATTAGCTCTGGCAAATCTGTGGTAATGAGTTGTGACT
GTACAATCATCACCAATTTTGTTGATGGTTATAGTAATAAATCACCACCT
GTCGAGAAACTACGTCGTGGTTTTGGTTTCAAGAAGAGATATTATACACT
TGGGCTGGTTGATATTTGTATGAGATGCTGTAGAAATTTGGAGAGTCTGG
GAAGGAAATTGGTTTTCTCATATTACATAGATGAAACACAACAACAATTA
AAAGGTTAGATCTGATTTTAAtgaaatacagttgactctcgctaattcga
attcGAACGGAATCTTATTTGCTCGTCTTATCTtaaattcgaattaaaga
aagtttctccttgacggggactgggaataagttcgaattTATGAAACgat
tcgaataagcgagagtctactgtagtaaaatcaatcattttcaaaaatga
cgaaATTTACTAACACTATTGATAAAAGGGGGAAGAACTTTGTTAAAGCC
AACGTTCACAACAGGATCAGATTATGTTGGATGTAGCAAAGTCGGTAATA
ATACATATACatctttcatttaaaatgcattGGAATATAAATGATTTTTA
CACTgacttttattgaaattcaaaatctgAAACTTATTATTAATACACat
cttgtttttataagaacaaactatatgagaacataaggcttcgatttcca
aaatgttaagaacaagttaagaacattttaaggcttcacggaCTTTAAAA
caaccaatttcttaggaagatGGAGAAAAATagtcacaaaatggtcaaaa
taagaacatgttaagaacattacttaaaactcaaaaagttaagaacatcc
aaaggcttcaaagtttttgaattttcttataaaagaaatataTACATGTA
CAGTCATTTTTAGAAACAAATTTCCTACACCTACGCCTTCAGTTCATAAT
GGGTTTTGATTTATCATTTTTGATAACAACGTGGGTTAAAGATTAGGTAG
CTAGGGATTCGAAACTATACTATAACAGTTAAGAACTGTATCAAAAAGTC
AAGTCACGTTTATAACTCAAATCCAAGTCAATaatgaattgaaaatttaa
tgtaTTTGTCACAATTTTATTATTACTAAGAGTGGGAACCAATTTAAACT
CGAAACAAgatttaattcatgatattcatgacgtaatgttttctacggaa
ataccccggttttagccagtagtggcaaatttaagctagacaaaaattgt
ataaaatttgccactactggcaaaaaccagggtctttccgtagaaaacat
tacgtcatgaatatcatgaattcattTTGAAGAGTGCACAACATACCTTT
TGTCTATGATTGTACGAGGTAGAATTGATGTCAAATGTCGTCAGAAGTTG
CTGCcttttgattttcttataaacaGAAAATTTTGGCACCATACTCATCC
TCGCTAAACTGCTGTCCGATCCCTTTGTGACGTTAAAGGGACGGTACACG
ATTTTTCTAATGGGAACACCCAAATTATTTGAAGCCTCTGGATGTTCTaa
accttttgagttttaagcctacaaatgtttttaatatgagtatttttttc
gatttctttagagtccgcaaaaccttaaactgttcttaacttgttctcaa
tattttgacaatcgaagccttatgttctcatatagtttgttcttatataa
aaataaaattgtagaGTTAAATGCATTTTTTTTGACTCCTAACAGGTCGA
TTCGAGGTTGAAAATAGTAAACTGGAACGAGTATACGAAATCGAAGAATT
ACCGAAAAGTTgttttgacagaaaatacattttgaaatGGACGATGAAAA
CATATGACCGGGTATTATATTTGATATGGGATGACGAAGGAGAAGGGAAA
CAATTGTTGAATGTTTTTAAAGATTACAGAGAGGTAAGTGCATAGACCAT
TTCACttaacgacttactattggtctaattttttgaaaaattttgaaacc
gtTATcggggcgcaatcagtcctgataacctatgatccatttcgactgtg
aaattacctattaaccctttaagtgccaatgtcgggTATATTGGACATGG
GCTAtactgtaatgcccagtttgagttagaaatcgtcattcttggtctaa
ctcgtaggaattggattgggcttcatggtcaagcaaaaaaaatcaaaagt
gagtctttccagcgagattttaagccaaaaagtttaaaaaaatgcaaaaa
tttgtggcaaaaatccacttttttgagattttgagcattttctgttaacg
agtgatccaagaacatccaaatttggCCCTAATTTACTTGAGTCTGTCCT
CTAGtgaattaatttgaaattttactgcTGGGCACCTTTCCTTCGTTCAG
TCAGGTCTGCGCAGCCTTTAAAGATTGAGCTAGCGATTTTCTTAAACCCT
TTAACTGCCACGGGAAAGAatgaaggttcgacctatttgccaggaCAAGA
GCGACCACAGAGCTTACCAACACATTtagctttattttctgaaaaataag
ttatatgtgtttactttgagttgaaatatgtataattatgaaaaacatct
ttgaaatatattttaattattgAACTGTGTTATTTAATGAAATCTAGTTC
AAAATATCAAACTTTCAATATACTTCTGGCAAATACGTAGGCAGAAGATT
CACATTATAGCCCTCAGTATAATTCGTTACGGGTATTCCCCATTGAGAAG
CCAAACTTGCAATCCAGACAGAATCTAGAATTTCATCTTAAAtctattaa
ataaaataaaagagctCGTTTGCATTAACATGCAAAAACAAACTTTCAGC
AACAGCTCTCAGAAATAACATTACATCCAAAAATAATCTGGTTATCATTA
CCTTGTCATAAAGTTTACTTTATCAAATAAACATTACATTACTTCTCTTC
TaagtttctaaactttctttgaTGTTAAAAAGGGAAAGTACACACTTTGA
GACCTCTTATAGAggtataaaaattgaaaaataacaaattaaaaGGAGGT
TTTGGATTTAAGGGGTTAAAGGTACACCTATTCAGCAGGAGTAGATTTTA
TATACGATTGTTTGGAAAAGTACCAACTTGTGGGCCATTATTTTTTAACA
AGAGTTCTAATTTTTTGTATTTACaacttatacacccctgtctcgcagcc
ccggtggGATATTTTTCCTCAGttgagataaaaatttccatCGAATTTCA
ATGGAGATAGCAATTTTATTGTCCAAAGATTAAAAATTCGAGTgagaatg
gttttggagtgcaattttttaaacaatgaaTTTCTATCGTGAAAGCACat
gtcgaaatcatatatcgacgctgtgccgaccaatccagattctattcagc
gcgcaatcaacgcagggaaaagtaaccatgacgaccatccaagatcttgg
atgaagttcaaagttgatatttttattcccatcgttgaaaacacaactca
taaatgtcatcaatgctttttaaaaagagtcagtgatagagaatcataac
ataaagtctgtctattatttcgattcaattaaagtggcatttccataatt
aaaactttagtaattactgttatacatttggggatcatgtaaaagatttc
ttttgaaagaaactcattttaattacacttggaggtttctgggggattcg
taaatagtaaactgcatactgatacagtctgctaatatggtaatatttgc
tcttcatctttgattttttctacagggtgtccctaataaaagtatcgagt
ttgaacatgcgattgagtagaaagttttaagtgtgtattcacaaaattgt
attttaagctcccCctcttttttctttgtcattacgattaatttatacgt
tgtaactaccttttgtaatgagcctatgtgatggagaacgttcttatatt
ttagcgataacacacacaaacttttttactcaatcgcatgttcaaactcg
atacttttattagggacaccctgtacagtacagtgattagattaacacat
gcgcgataaaatttatattattggtcttcagaggttgaaatattctcaac
ctctgatactcagggtaatgaatttcgagtggggatgaaatctaAGTCAA
CTTCCCAGTGAGGCTGagatttcagggtattttcccaccgggaacgaaag
ttttgctaaattttccacATGCAGCGGGtcagtgacacaggggtgtaact
ATCCCTTATCGAGGATAATATAAAGCTGTTTCAGAGAATCTTACGTCAAA
TGAAACTTTTTAAATCAACACCAATAATGATCATCCCTAAGGACGTGACC
AGGTTTTATTAAATCCAGTGAAAACCCAGCTCTTTAAAatctttcacttt
ttcacaatAATTTTAGAATCGAAGAAGAAGTCGAAGCAGACAATCAAGTG
ATACGTCAGAGGCTTCAAGTCACGGTGGAAGTTCAAGACACAGCTCAAAT
GGTTCAAGATAAAAAATATCACAATTTGATTTTACTGAAAGGTAGAGAGA
GTACCTTCAAAAATTTCTATTCGNAATAtcacattttgattttaaccGAA
AGGTAGAGAGAGTAACTTAAAAAAATTGCTATTCGTGgtatttatgacgt
aatgtctGATTTGAAAGCACCCAAACAGTCGGGTCGTTTGCatctaattt
tgaatttgaacaaTAAAACTATTGGCAAACATTACGTATGAATAGCATGG
CTTTCTTGGTAAACACTGGTAAGCAACATTATCCACAAATTtatgtttaa
ccctttaagtgccacggtcctttttttctagttttttttaaagaaaatcg
ctagttccaactttaaaggcttatatctccggatctagaaggagttagaa
gctcgttcatAGTTTGTTGGATAGCttagtctcttctttctttcaaactc
aaaactcaaactgggcattacaggagggcttcgccatcttatatagccca
tgtctgatatacaAGACATTGGCatttaaagggttaaagaaaatttcGCA
CGAAAAGAGGACAGCAACACATTCACGACATAAAAATTACAattattttg
ctattttatactcagtttttgagcatttttatcgcttaaaataaaattct
aaaattcgtGAAAGTTGTATCCGCTGAATTCGTTCCAAAagtaaaattcg
cgaaatttcgcgattttgcagcttcgtgaaagtttctgctcttAAAGTAT
ACGGAATTTTATTTGTATGAatctttttctgttttgtttttcgggTACAC
TGTATACCACACCCAGCTGGACTCCTAAATTAGGAGGAAGGTCTCTCCAT
ATTAGTTTctatttttaagagttttataAGTAAAGAACATTATTTATATA
AATTGCTCACTGGTTTAGTATAAtataccttttcgaccgtagtcgcacgg
tcgggcgcgtgccacttatttatttaattatccccctaaactcgatccaa
gcCTGCGCGACAATTGGCGAAAAGGTGTATACAGTAATTCTTGTAGAGaa
tgatgtttaaaaaaaggaaaaaaatgaattttatattCTTTATATCATTC
CACGGTTTGTAAATAACGTAAATATCAATATTTATTGACTATGTATTCAC
TTTTATATTAAAATTTTCTACGTCCTTTTAAAAAGAATTGTGAAGTTTGG
AGATTCTCTAGCTTCTCTAGCTAGTAGAAAGTTGGTAGATAGTGTGACCT
GACTAACAGAATAATAGACTCGAGAAAGTATGTGAGTGCAATATCGAAAA
TACTTCGATTGAATTAGCTAGGGGGGGCTTTTATTCATAACATTTTGTGA
TTCTATGAAACCGAAACTACATTTCAATCTTCAAAAGTTTCCccttaaag
attttgtttttagataagagtgatatcgtttgcttgctcgtcaatttttt
a Coding sequence (CDS) from alignment at scaffold_506:337874..343874+ >TCONS_00069693 ID=TCONS_00069693|Name=TCONS_00069693|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at scaffold_506:337874..343874+ (Clytia hemisphaerica)
ATGAGTTGTGACTGTACAATCATCACCAATTTTGTTGATGGTTATAGTAA
TAAATCACCACCTGTCGAGAAACTACGTCGTGGTTTTGGTTTCAAGAAGA
GATATTATACACTTGGGCTGGTTGATATTTGTATGAGATGCTGTAGAAAT
TTGGAGAGTCTGGGAAGGAAATTGGTTTTCTCATATTACATAGATGAAAC
ACAACAACAATTAAAAGGTCGATTCGAGGTTGAAAATAGTAAACTGGAAC
GAGTATACGAAATCGAAGAATTACCGAAAAGTTgttttgacagaaaatac
attttgaaatGGACGATGAAAACATATGACCGGGTATTATATTTGATATG
GGATGACGAAGGAGAAGGGAAACAATTGTTGAATGTTTTTAAAGATTACA
GAGAGAATCGAAGAAGAAGTCGAAGCAGACAATCAAGTGATACGTCAGAG
GCTTCAAGTCACGGTGGAAGTTCAAGACACAGCTCAAATGGTTCAAGATA
AATGAGTTGTGACTGTACAATCATCACCAATTTTGTTGATGGTTATAGTA
ATAAATCACCACCTGTCGAGAAACTACGTCGTGGTTTTGGTTTCAAGAAG
AGATATTATACACTTGGGCTGGTTGATATTTGTATGAGATGCTGTAGAAA
TTTGGAGAGTCTGGGAAGGAAATTGGTTTTCTCATATTACATAGATGAAA
CACAACAACAATTAAAAGGTCGATTCGAGGTTGAAAATAGTAAACTGGAA
CGAGTATACGAAATCGAAGAATTACCGAAAAGTTgttttgacagaaaata
cattttgaaatGGACGATGAAAACATATGACCGGGTATTATATTTGATAT
GGGATGACGAAGGAGAAGGGAAACAATTGTTGAATGTTTTTAAAGATTAC
AGAGAGAATCGAAGAAGAAGTCGAAGCAGACAATCAAGTGATACGTCAGA
GGCTTCAAGTCACGGTGGAAGTTCAAGACACAGCTCAAATGGTTCAAGAT
AAATGAGTTGTGACTGTACAATCATCACCAATTTTGTTGATGGTTATAGT
AATAAATCACCACCTGTCGAGAAACTACGTCGTGGTTTTGGTTTCAAGAA
GAGATATTATACACTTGGGCTGGTTGATATTTGTATGAGATGCTGTAGAA
ATTTGGAGAGTCTGGGAAGGAAATTGGTTTTCTCATATTACATAGATGAA
ACACAACAACAATTAAAAGGTCGATTCGAGGTTGAAAATAGTAAACTGGA
ACGAGTATACGAAATCGAAGAATTACCGAAAAGTTgttttgacagaaaat
acattttgaaatGGACGATGAAAACATATGACCGGGTATTATATTTGATA
TGGGATGACGAAGGAGAAGGGAAACAATTGTTGAATGTTTTTAAAGATTA
CAGAGAGAATCGAAGAAGAAGTCGAAGCAGACAATCAAGTGATACGTCAG
AGGCTTCAAGTCACGGTGGAAGTTCAAGACACAGCTCAAATGGTTCAAGA
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069693-exon-scaffold_506-1491911889:337874..338177 | TCONS_00069693-exon-scaffold_506-1491911889:337874..338177 | Clytia hemisphaerica | exon |
| TCONS_00069693-exon-scaffold_506-1510915933:337874..338177 | TCONS_00069693-exon-scaffold_506-1510915933:337874..338177 | Clytia hemisphaerica | exon |
| TCONS_00069693-exon-scaffold_506-1575043694:337874..338177 | TCONS_00069693-exon-scaffold_506-1575043694:337874..338177 | Clytia hemisphaerica | exon |
| TCONS_00069693-exon-scaffold_506-1491911889:339669..339856 | TCONS_00069693-exon-scaffold_506-1491911889:339669..339856 | Clytia hemisphaerica | exon |
| TCONS_00069693-exon-scaffold_506-1510915933:339669..339856 | TCONS_00069693-exon-scaffold_506-1510915933:339669..339856 | Clytia hemisphaerica | exon |
| TCONS_00069693-exon-scaffold_506-1575043694:339669..339856 | TCONS_00069693-exon-scaffold_506-1575043694:339669..339856 | Clytia hemisphaerica | exon |
| TCONS_00069693-exon-scaffold_506-1491911889:342340..343874 | TCONS_00069693-exon-scaffold_506-1491911889:342340..343874 | Clytia hemisphaerica | exon |
| TCONS_00069693-exon-scaffold_506-1510915933:342340..343874 | TCONS_00069693-exon-scaffold_506-1510915933:342340..343874 | Clytia hemisphaerica | exon |
| TCONS_00069693-exon-scaffold_506-1575043694:342340..343874 | TCONS_00069693-exon-scaffold_506-1575043694:342340..343874 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_506 | supercontig | scaffold_506:337874..343874 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011993 | PH_dom-like |
Blast
The following BLAST results are available for this feature:
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