TCONS_00069684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069684
Unique NameTCONS_00069684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069684 ID=TCONS_00069684|Name=TCONS_00069684|organism=Clytia hemisphaerica|type=transcript|length=505bp
agaaaaaatgcgTCTTAACTAAGTAAATATTTGAGGCCTGTAATTCATTT
TTAATAGTTTTGAAAGCGAGGAAAAACCGTTCGTTACGTTCAATTTGATG
ATTTATTCCTTTTTTGATGATTTATGATCGTATGTTGAAAATACCTCAGT
TTTGCAAGCCGATGCCAATTGCCAGTGCAAAAAAGGAAATACATTAAAAA
TGACTTACTACTTAGTTTTAAACGAAATTGCATTGAAACCAGGCTTTGAT
TAGAACTATTGAGGGTTTTGCAGTTGTTGGAAATATCGGCTTACCAAACA
GGGGTGTGTAATCTTTTTAAGATTGAAAGTTCGAAACTAGTTagtaaact
ttaaaaaaaaaaccttttcatGGAACACTAATTTTGTATCATATTCtatt
aagattttgaaatttattataTTGTAATTGACTTTTGTGTACATATAGGA
ATTCGCTGTTAggcttattttcaaattttgaataattgGATTTTTATACC
AGCAT
Run BLAST on NCBI

transcript from alignment at scaffold_505:121341..121845

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069684 ID=TCONS_00069684|Name=TCONS_00069684|organism=Clytia hemisphaerica|type=transcript|length=505bp|location=Sequence derived from alignment at scaffold_505:121341..121845 (Clytia hemisphaerica)
ATGCTGGTATAAAAATCcaattattcaaaatttgaaaataagccTAACAG
CGAATTCCTATATGTACACAAAAGTCAATTACAAtataataaatttcaaa
atcttaataGAATATGATACAAAATTAGTGTTCCatgaaaaggttttttt
tttaaagtttactAACTAGTTTCGAACTTTCAATCTTAAAAAGATTACAC
ACCCCTGTTTGGTAAGCCGATATTTCCAACAACTGCAAAACCCTCAATAG
TTCTAATCAAAGCCTGGTTTCAATGCAATTTCGTTTAAAACTAAGTAGTA
AGTCATTTTTAATGTATTTCCTTTTTTGCACTGGCAATTGGCATCGGCTT
GCAAAACTGAGGTATTTTCAACATACGATCATAAATCATCAAAAAAGGAA
TAAATCATCAAATTGAACGTAACGAACGGTTTTTCCTCGCTTTCAAAACT
ATTAAAAATGAATTACAGGCCTCAAATATTTACTTAGTTAAGAcgcattt
tttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043389XLOC_043389Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069684-exon-scaffold_505-1491911889:121341..121845TCONS_00069684-exon-scaffold_505-1491911889:121341..121845Clytia hemisphaericaexon
TCONS_00069684-exon-scaffold_505-1510915933:121341..121845TCONS_00069684-exon-scaffold_505-1510915933:121341..121845Clytia hemisphaericaexon
TCONS_00069684-exon-scaffold_505-1575043694:121341..121845TCONS_00069684-exon-scaffold_505-1575043694:121341..121845Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_505supercontigscaffold_505:121341..121845 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.13144	1.40498	1.38686	0.432787	0.808011	0.37532	0.485726	0.159649	0.23914	0.413915	0.0680589	0.0730376	0.0899764	0	0.382233	0	0.347654	0.339147	0	0.24988	0.386056	0.918789	0	0.350793	0.399097	0.271078
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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