TCONS_00069664 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069664
Unique NameTCONS_00069664
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069664 ID=TCONS_00069664|Name=TCONS_00069664|organism=Clytia hemisphaerica|type=transcript|length=427bp
AGCTATTCCATCCACGATGGTTGAAATTTTACAATGACTTGCTTTTTGTA
GGACCCTTTTTGTAGCTAGCTAGCTGTGCTTTTTTTGCTGaacaagaaaa
cagaaaaagCTTGATATCAAATGAATGTCACAAACACAATTCGATGATGT
TTCTGCATGACTCTCCCTAAAGGTCATTTTCAAGCATATTCATTAAAACG
AAAAAAGACTCCAATTATCAACCTTCGTATCTGTATTTCACAAATCGACC
TTCACTGGCATGTTCTAACCTTATTGTCCCGTCAATTCAATGCTATTCAT
TCCTGTTCATTCAGCCATTTTCCATGATGTTCCTGGTGTATGTATCATGT
CAgagcaatttttaaaattaatacGTGATTACTGAATTTCAGTAAATCGA
ACGTGTTCCAAATAATTTACATTCAAC
Run BLAST on NCBI

transcript from alignment at scaffold_504:861..2486-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069664 ID=TCONS_00069664|Name=TCONS_00069664|organism=Clytia hemisphaerica|type=transcript|length=1626bp|location=Sequence derived from alignment at scaffold_504:861..2486- (Clytia hemisphaerica)
AGCTATTCCATCCACGATGGTTGAAATTTTACAATGACTTGCTTTTTGTA
GGACCCTTTTTGTAGCTAGCTAGCTGTGCTTTTTTTGCTGAACAAGAAAA
CAGAAAAAGGTATATATAAATATTCAAATATCTATGAAAATGTCTCAGAA
AAATCATGATGAGCCTTCTTCAGAAGGTATTTCTCAGAAATTTATTGAGC
CTTCTTCAGTTTCTGATGAAGGAATTTCTCAGAAAATTATTGATGAGCTT
TCTTCAGAAGAAGAACAGATAGTAGATCAGGAGAGGTACGTGTACAAAAA
GGATAGAGGTAATAGACACTTGCATTTTATGAATTCGTGTAGACACCAAG
ATTCAGTGTATACATGTGCAGTAGACTCATTTTTGGAAATTGCATATTCT
ACGTTTGGCCCACACATTGCTGAAATTGAGACACAGAGCTTATTCTTTGA
TTTGTTAACAAATTGTTTGAAGTCATACAGTATCATTTTAAATTCAGACA
TCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNATTTTTGCAATCGCAAATTTAACCGCTAAAAATTGCGAATTTTTCA
ACCAAAAATACATTCAAATATAGCGCTTTTGATTCTCTAAAACAACCTAA
AAAAAATTCCATAATTATATTTGACTATCAAAAGTTACAGGCATTCTTGT
TCCCACTGCCAATTATATCTGGACAGACTTTAGAAACTGAGACAAGATTG
ATTTAATAAGGGTGTATATTGATGAGAACTAAACGTTTCCAATGACTGGG
TTGGGGGAATGTATTTTGTATGCAATTTGTAAATAATGATTTTTTCTATT
TAAAGCTTGATATCAAATGAATGTCACAAACACAATTCGATGATGTTTCT
GCATGACTCTCCCTAAAGGTAAGAGTTGTATTTTTAGTTGCTGTAAGTAG
TTAAGATACATACAGTGGGACTTTTCGTTTTCATTTATTTTTTTAAATTT
TCTTGTCAAAATAAATAGCTTTCCCGAAACCTATTACGTAATCGTTCTTT
AATAAAAAATGTCTTGACATTTTCAGGGATGTTTTTTTAGAATAAAACAA
ATTAAAATGACGTGTTTGATTGTTCAAAATTCACACTATGCAGAAAGTAA
ATGTTTTAGGATTTTGAAAAAGGTCTATTCGTTCACACATTAATGTTATG
ATTTTCCGTTTTTAGGTCATTTTCAAGCATATTCATTAAAACGAAAAAAG
ACTCCAATTATCAACCTTCGTATCTGTATTTCACAAATCGACCTTCACTG
GCATGTTCTAACCTTATTGTCCCGTCAATTCAATGCTATTCATTCCTGTT
CATTCAGCCATTTTCCATGATGTTCCTGGTGTATGTATCATGTCAGAGCA
ATTTTTAAAATTAATACGTGATTACTGAATTTCAGTAAATCGAACATGTT
CCAAATAATTTACACTCAGCGAATAATGTTCCTGGTGTATGTATCAAATC
AGAGCAATTTTTAAAATTAATACGTAATTACTGGATTTCAGTAAATCGAA
CGTGTTCCAAATAATTTACATTCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043379XLOC_043379Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069664-exon-scaffold_504-1575043694:2378..2486TCONS_00069664-exon-scaffold_504-1575043694:2378..2486Clytia hemisphaericaexon
TCONS_00069664-exon-scaffold_504-1575043694:1519..1581TCONS_00069664-exon-scaffold_504-1575043694:1519..1581Clytia hemisphaericaexon
TCONS_00069664-exon-scaffold_504-1575043694:992..1221TCONS_00069664-exon-scaffold_504-1575043694:992..1221Clytia hemisphaericaexon
TCONS_00069664-exon-scaffold_504-1575043694:861..885TCONS_00069664-exon-scaffold_504-1575043694:861..885Clytia hemisphaericaexon
TCONS_00069664-exon-scaffold_504-1510915933:2378..2486TCONS_00069664-exon-scaffold_504-1510915933:2378..2486Clytia hemisphaericaexon
TCONS_00069664-exon-scaffold_504-1510915933:1519..1581TCONS_00069664-exon-scaffold_504-1510915933:1519..1581Clytia hemisphaericaexon
TCONS_00069664-exon-scaffold_504-1510915933:992..1221TCONS_00069664-exon-scaffold_504-1510915933:992..1221Clytia hemisphaericaexon
TCONS_00069664-exon-scaffold_504-1510915933:861..885TCONS_00069664-exon-scaffold_504-1510915933:861..885Clytia hemisphaericaexon
TCONS_00069664-exon-scaffold_504-1491911889:2378..2486TCONS_00069664-exon-scaffold_504-1491911889:2378..2486Clytia hemisphaericaexon
TCONS_00069664-exon-scaffold_504-1491911889:1519..1581TCONS_00069664-exon-scaffold_504-1491911889:1519..1581Clytia hemisphaericaexon
TCONS_00069664-exon-scaffold_504-1491911889:992..1221TCONS_00069664-exon-scaffold_504-1491911889:992..1221Clytia hemisphaericaexon
TCONS_00069664-exon-scaffold_504-1491911889:861..885TCONS_00069664-exon-scaffold_504-1491911889:861..885Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_504supercontigscaffold_504:861..2486 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.488226	0.634796	0	0	21.0688	12.1398	17.9938	22.1343	6.5827	6.1153	8.57373	5.09411	4.22115	2.36046	2.40267	3.17345	3.29858	2.12874	3.28697	2.89648	8.45494	5.98641	3.73193	4.75002	2.79566	5.92577	6.47139	4.04861	2.70946	0.920171
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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