TCONS_00069649 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069649
Unique NameTCONS_00069649
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1524

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069649 ID=TCONS_00069649|Name=TCONS_00069649|organism=Clytia hemisphaerica|type=transcript|length=1524bp
GTAAAGATAAGGTTTGATGTCTGGAAAAAGATATCCAATAGAAATAATAA
ATCAACATATTTGAAATACCACATCAACTTGATAGAACCGTCAAAATTAT
TTAGGATACGTTATTTGAAAACATACGAAGATACTGTACTTATTATAAAC
AAAATGACTGCAAGCTCATCCACACCACCTTCAACACCTCGGAAAGCTCA
TAAAGTTGTCTTGATTGGAGATTCACAATGTGGAAAGTCATCATTATTAA
GAAGATACAcaagaaaaagttttgaagaGGATTATATGCCGACTGTATTT
GATTCAGGATCCGCAGATATCGTCGCTGACCAGAATAATGATATCCAAGT
TAACATCTGGGATACATCAGGCTCTGGAGAATACGACCATGTCAGACCAT
TATCTTTTGGAGAAGCGACTGTCTTCATTGTCTGCTTTGACATCACCAAA
TCAACAACTTTAGAAAATATACAAAGAAAATGGTTGCCAGAGATTCGCCA
GCGTCACGCCGACAGACCCATTATCTTGGTTGGATGCAAAAGTGATCTGA
AAGCTGACCAGAAACTTACAAATATCCACAAACGATTAGTGCTGTCAAGC
CAGGGTTTGTTACTGGCAAAACATATTGGAGCAATCGCATATTATGAATG
TAGCAGTAAAGTAGAAGATACACCTGAAACGATAAACTCTTTATTTGAAA
CTGCAGCCATGGCGTCAACTGGAAGTCTTGGTAAAATCTCAAAAGAACat
cgaattaaatttgataaaaagaagaacaaagcATACGAGAAATGCACCAT
TTCGTGAATATGTAGAATATTGGTGAACAAGCTAGTTTGAAGAAGATGAG
CTGGAGACAGTAGGAAGAATGATGGTGGTAGCAGCTTCTCGTAACCTTGC
GTCGACTCGTCTTTTCTTGTCTGAGCATTATTTTGGTCATTGGTTGCCCA
TCTgacacacaacgtcgtttcaacgtttttctgaTATTCAAAAcgcccat
ataacgttagatgaacgttgaaacaacgttgtgtgtcattGGTTGTCGCT
ATTTCTACCAGAATCAataattttcaatggaatttacCAAACATTACCCA
AAGATGACTCAATATACATGTTATGGTGGTAATGAAGaatttactaattt
gaagcgACTAACAGCTCGAGTTTTACTGATTATGTAGCATTACTCAAATG
TCATTTATGTCATATTTTGACATTATATTGAAATAGAATTCAGATGCCCA
ATGTGACTTTTATGGGTTCGATGGATTCGGCAAACCAGTTATTTGCATCA
ATCTTGGTTGTAAAACTGGTAACTAAAGAGATCAAacctttgataaaaat
atcagagtaattttgatgctttagaattaatttctttttttaaataaaga
tgCTTTGTAAATATTATATACTAAGCGCAAACTCTTTCGTTTTAGAAAGA
TCTTTGTAACATGTAATTATCCAAATTATGAAGATATGAATACAGAATGA
TCTAAccatgaaattttgctgact
Run BLAST on NCBI

protein sequence of TCONS_00069649-protein

>TCONS_00069649-protein ID=TCONS_00069649-protein|Name=TCONS_00069649-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
VKIRFDVWKKISNRNNKSTYLKYHINLIEPSKLFRIRYLKTYEDTVLIIN
KMTASSSTPPSTPRKAHKVVLIGDSQCGKSSLLRRYTRKSFEEDYMPTVF
DSGSADIVADQNNDIQVNIWDTSGSGEYDHVRPLSFGEATVFIVCFDITK
STTLENIQRKWLPEIRQRHADRPIILVGCKSDLKADQKLTNIHKRLVLSS
QGLLLAKHIGAIAYYECSSKVEDTPETINSLFETAAMASTGSLGKISKEH
RIKFDKKKNKAYEKCTIS
Run BLAST on NCBI

transcript from alignment at scaffold_503:249810..255735-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069649 ID=TCONS_00069649|Name=TCONS_00069649|organism=Clytia hemisphaerica|type=transcript|length=5926bp|location=Sequence derived from alignment at scaffold_503:249810..255735- (Clytia hemisphaerica)
GTAAAGATAAGGTTTGATGTCTGGTCGGTAATTTTTTCAAAATTTTAGCG
AGTTTCTCGACATGTGTTATTTTGACGTATTTTGATATTTTTGCCATCTT
TTGTTGGCTGTTTTGTTAATGGGATTGGCACCTTTGATGAGGAAATGACG
TTACATTTTTATCACCTTATAAATTAATATAATAACTATTAGATTAATTA
TCAACGCGAAAATTGATTACCGCGAAATAGTGGAATATCTGAGAAAGTTA
ATATAATTTTTTACGCGTTAAAGAGAATACTGGAGATCTTTGTATATTTA
TTCCATTTCCGTTATTTATATCACTTCATTAGAATTTTGTCACATCCGGT
TATTGACTCCCAATAGGTTACAATTTTATGAAGAATGAAGNCTTGTCATA
TCCGGTTATTGACTCCCAATAGGTTACAATTTTATGAAGAAGACAAAGGG
AGTAATCAATTTCATTAAAAGAAAATATCGGCTTTTTTCGGAAGTTAATT
ATTACTCTAGCAAGTCATGGAGTAAACACATCGTTGTTATATAAGTCGGC
TCAATACATACGAGTCGAGACATTATACAGGTCCCTACAGTATGGGGTAT
GGAAAGCTGTCAGTTTAGTTTGATAGTATTTGCTTATGTTGAATGCCTCG
CTCACGTGAAGGCAAAATTGCTTTTATGGTTGTTCACTTCAAAACTTAAC
TGGTTCAACGGCTTGAAATCCAGCGAGGATAATGGGCTTTATGGAAACAG
GGATGGTGTTTATATAGGTTCACAAGGTCAACGCGTTAGATTTACAAAGT
CAAAATTATTCTTATTGGAGAAATAGTTTTTCAAAGTTTATTTCACTGTA
ATATTAATTTTTGAAATACGTCACGCGTCACGTCATACGTCGCGTGCTTT
ATCAGAATCGAGATTTACACCCGGGGGGGTACTACCCTTGTCGACCGACG
GGGGTGCTCCGCCTAGGTTCGAAAAATGGACCCTACGTGGGACTCGAAAT
TTGCGAAAAAAGTGACCCTTAATGGGACTGAAATTCCAAAATTTTCTCAA
ATTTTCTACTTTTTTCCCAAACTTTCCAAAAATAGGCACCCTACGAGGGA
CTGATTTTTCTATTTTGGTGTTTTTGCGACCCTACCAGGGACTCGCGGAG
GTTAAAAAAGGTACCCTGGCCAGCGGAGCATCCCCGTAACCGATTTTGCC
CTAGTACCTCCCCCGGGGATTTACATGGTACTTTTACGATTTTAAATTTT
TTTGAACAATAAGTTGCTTAACCTTTAAGGATGCGACAGTTGCTAGATAT
ATTATTTAAGTATTCTTTTAACAAAGTGACTAAAACAAATATGTACTTTT
CGCGTTTATTAATCGCGCGAAAATTGATCGAAAGAAATTTGAATCACCCA
GACAAAACATATGAGGGATGTCTGAAAGATAATTAAAAAGAGAGTGAAAA
ATGATTTGAAAACAAAATTGAAGTATTCATAGTAAATTGATAAGGTGAAA
TCAAGAAAAGCTTGGGTAATTAATTATCATAATTATCTCAATTATATTTT
TGAAAAGTCTGCCTTATATTGTCACCTTCTCACTTGGGAAAAGTTGATTA
TTAAATTAGCTGGCGTACTGTGTTTTCACCACACGACTAAATGGACAGCT
TTTGATGTGTACCGCATAAAATAATAATGAAGGAGAGGAGCATACGTGTG
CTTTGTTTCTCTTTACTTTGTCTGAACGGTCATGTCGAAACTGTCAGCTT
TTCTCCGGTCAGATTGATGTTAGAATAAATACAGATTTCTTCAAGTGTTC
TTTGGAGTGACACTTGAAATCATTCTACTGCGCTTTTCAAGTTTCTCACT
ATTTTAATGTTGATTTTTTGAAATCAAAGGGTTATATTTTAACCCCCTTT
TTTGTGAAATTTTGGCTTCTGAAGAAGGGACGATTCTGACAATATTTTAC
ATTGTGTTACGTCCTTGNGTTATATTTTAACGCCCTTTTTTGTGAAATTT
TGGCTTCTGAAGAAGGGACGATTCTGACAATATTTTACATTGTGTTACGT
CCTTGTTTGAATTTCTTTATGACATATTTGGCATCTTGAATTCCCTCACA
CATCTGTCAGTGGATAATACCTTTCTGGGAAAGAACTTGTCAATTTATGA
CTGTTTATAGTAATTTTTTCTTGTTTTTGATAGGAAAAAGATATCCAATA
GAAATAATAAATCAACATATTTGAAATACCACATCAACTTGATAGAACCG
TCAAAATTATTTAGGATACGTTATTTGAAAACATACGAAGATACTGTACT
TATTATAAACAAAATGACTGCAAGCTCATCCACACCACCTTCAACACCTC
GGAAAGCTCATAAAGTTGTCTTGATTGGAGATTCACAATGTGGAAAGTCA
TCATTATTAAGAAGATACACAAGAAAAAGTTTTGAAGAGGTGAGATTTCA
ATATCTAATGTATAGAAACAGAGAGCATCTTGTATATTTCTTAAAAAAGG
GGTTTTGGAAAGTTTGGAAGTGATAGAGGAACGCTTGAACATTTTTATTT
ACACATTATAATAAAAAACTGTATATAAGAACATAAGACTGTTAAGAAAA
GTTGAGAAAAGTTGAGAACATTTTAAAGCTTTTTTGACTCAAGAACACCC
GTTTATTTAGGAAAATGGGTAAAAATGGTCAAAAAATATTCTTAAAACAT
TTTTAGGCTTAAAACGTATAATCCCTGTATTTTTCATGACATTTTGTGTA
AATATCTCACTTATTCAAATGCTGTTTAAAAATGTTTTAAGAGCTGACTA
AATTGTTTCGTGTCTTTGAAAATCTTACCAATTACCAGATTTGTAAGATT
AGCAATCAAACAATAATCTTGAATTCGACTTTTGGACTTTGAATGTGAAG
TTTCACAGGCTGGGTAAATAGGTTTTTAGAATCCACTCGCATTGCCAATT
TCTTTGTGTTTGTTAATTTCAAAATATCTCAACTTTCTAAACCCCATTTT
CAATGAATCGGAATGTTATTATTGCCACGACATGAAATCGTAAACTTTCT
CATCAATCAAAGTACCTTTTCATTCATACAAAGATTTACGAGGTCCCTGA
AATAGCATGAGAATCAACTACCTGACCCACAAACGCCTCGCTAAACGGTT
CATTAGTACAAACTTTCAGACATGCTAATGTGTTTATTTACGAGTGATTA
ATATATCCTTATCTCGTTTGATTTCAGGATTATATGCCGACTGTATTTGA
TTCAGGATCCGCAGATATCGTCGCTGACCAGAATAATGATATCCAAGTTA
ACATCTGGGATACATCAGGTAAAATNCGTCGCTGACCAGAATAATGATAT
CCAAGTCAACATCTGGGATACATCAGGTAAAATGATGCTTTAATTTAACT
TCAATTTGCTATAAACATGCTCGATTGACGTTTTCGCTAAACAGACTTTT
AATTTCTCAATCTCTGATTGCACTGTCGGTAAATCTAACTCATCATCAAG
CCTAATTATTTAAAGATTTTTGGTTTCCTGTTACTCCAATCATTGTTACA
CAGTAATTAAGTTTGAGTATCTTCTATTCGTTTCTATGGAGCTTAAGGTC
CGTTAAAATATTGATTTCCATGTGATGTTATATTCTACTTTCCGTTGTTA
TACAGACTTCCTGATTATGATCCCTTCCTTTCACTTCAGAAGGAAATTTA
TAGTAACTGTAGCCCACTCAATGTCAATATTTTAGGTTACTATTATTTCT
ATTTCCATGACAATTTTAGGCTCTGGAGAATACGACCATGTCAGACCATT
ATCTTTTGGAGAAGCGACTGTCTTCATTGTCTGCTTTGACATCACCAAAT
CAACAACTTTAGAAAATATACAAAGAAAAGTAAGGAAGAAAACTAATTAG
AATTTCAGATTATATACTTGCTTACTTTTAAATCTTAGTAGTTTTCAATC
TATTAAAGCCTAGTTTTACTAAAATACATAACCGTATTTGATATAAACTG
GAGAAGGGAAATTTTTGTCCTTCTGAACTTTTGTTTTGATGATTTTTAAT
TTGAATAGTTGGTATCATATTTTCAATGTTATTATAAAAGAAAGATCAAT
TCAAAAACACTTAAAAGTGTAACAGCGGCCAACCCTTTGTTTCACGTAAT
TAAGGCGTTCAAGTGCGGTCAACAACCATTTACGTTCTTTGATCAATTGC
GGTCGGAAAATCTTTATGCTATTGCCAAATCTGTTATTGTTTAATGATTT
AATAGACATGACAATGAACTCCAAGAACGTTTTTTCTTTCGTACGTATGA
TATTGAGTACTCCTAATTTTTACGCAATTGGTCATCCCATATTTGTTATT
TATCGTTGCGTCAAATCAAGGTTTTCCGTCTGAAATGTTACATGTTTTGA
ACCCTTAGCAAACACCCTTAAAAACTGTTTTTTAACCATAATGTTTTTGT
TTTTATTCTCCAGTGGTTGCCAGAGATTCGCCAGCGTCACGCCGACAGAC
CCATTATCTTGGTTGGATGCAAAAGTGATCTGAAAGCTGACCAGAAACTT
ACAAATATCCACAAACGATTAGTGCTGTCAAGCCAGGTAAATATTTACTA
ATATTTCTTTTAACTTTTACACATTGATTCGTATATGTCCAACGGTAGTA
GATTACAATCTGGTATTTCAACATTGAATTCGCAGGTTAACAACATTAAT
ATTGATATCTGAAAAGAGGTGGTTATACCGTCAATTATACTATACCTTGT
CGGTCCTTTTTACACCAACCCATATTACGCCAAAGTTCAGTTTTTCAATT
TTTATCCCGGTCCTAATTTTATACTAATCCTTTACGCCAGCGACGAAAAT
CTAACGCCAATAAGAATCGGCGTAAAAAGGACATCATGTTGTTAATCCTA
AATAAATTTTGTGATTTAAGACAACTCTTTTCTTTTACTTACAGGGTTTG
TTACTGGCAAAACATATTGGAGCAATCGCATATTATGAATGTAGCAGTAA
AGTAGAAGATACACCTGAAACGATAAACTCTTTATTTGAAACTGCAGCCA
TGGCGTCAACTGGAAGTCTTGGTAAAATCTCAAAAGAACATCGAATNCGA
AACTGCTGCCATGGCGTCAACTGGAAGTCTTGGTAAAATTTCAAAAGAAC
ATCGAATTAAATTTGATAAAAAGAAGAACAAAGCATACGAGAAATGCACC
ATTTCGTGAATATGTAGAATATTGGTGAACAAGCTAGTTTGAAGAAGATG
AGCTGGAGACAGTAGGAAGAATGATGGTGGTAGCAGCTTCTCGTAACCTT
GCGTCGACTCGTCTTTTCTTGTCTGAGCATTATTTTGGTCATTGGTTGCC
CATCTGACACACAACGTCGTTTCAACGTTTTTCTGATATTCAAAACGCCC
ATATAACGTTAGATGAACGTTGAAACAACGTTGTGTGTCATTGGTTGTCG
CTATTTCTACCAGAATCAATAATTTTCAATGGAATTTACCAAACATTACC
CAAAGATGACTCAATATACATGTTATGGTGGTAATGAAGAATTTACTAAT
TTGAAGCGACTAACAGCTCGAGTTTTACTGATTATGTAGCATTACTCAAA
TGTCATTTATGTCATATTTTGACATTATATTGAAATAGAATTCAGATGCC
CAATGTGACTTTTATGGGTTCGATGGATTCGGCAAACCAGTTATTTGCAT
CAATCTTGGTTGTAAAACTGGTAACTAAAGAGATCAAACCTTTGATAAAA
ATATCAGAGTAATTTTGATGCTTTAGAATTAATTTCTTTTTTTAAATAAA
GATGCTTTGTAAATATTATATACTAAGCGCAAACTCTTTCGTTTTAGAAA
GATCTTTGTAACATGTAATTATCCAAATTATGAAGATATGAATACAGAAT
GATCTAACCATGAAATTTTGCTGACT

Coding sequence (CDS) from alignment at scaffold_503:249810..255735-

>TCONS_00069649 ID=TCONS_00069649|Name=TCONS_00069649|organism=Clytia hemisphaerica|type=CDS|length=6456bp|location=Sequence derived from alignment at scaffold_503:249810..255735- (Clytia hemisphaerica)
ATCGAATTAAATTTGATAAAAAGAAGAACAAAGCATACGAGAAATGCACC
ATTTCGTGAGGTTTGTTACTGGCAAAACATATTGGAGCAATCGCATATTA
TGAATGTAGCAGTAAAGTAGAAGATACACCTGAAACGATAAACTCTTTAT
TTGAAACTGCAGCCATGGCGTCAACTGGAAGTCTTGGTAAAATCTCAAAA
GAACTGGTTGCCAGAGATTCGCCAGCGTCACGCCGACAGACCCATTATCT
TGGTTGGATGCAAAAGTGATCTGAAAGCTGACCAGAAACTTACAAATATC
CACAAACGATTAGTGCTGTCAAGCCAGGCTCTGGAGAATACGACCATGTC
AGACCATTATCTTTTGGAGAAGCGACTGTCTTCATTGTCTGCTTTGACAT
CACCAAATCAACAACTTTAGAAAATATACAAAGAAAAATCTGGGATACAT
CAGGATTATATGCCGACTGTATTTGATTCAGGATCCGCAGATATCGTCGC
TGACCAGAATAATGATATCCAAGTTAACGAAAAAGATATCCAATAGAAAT
AATAAATCAACATATTTGAAATACCACATCAACTTGATAGAACCGTCAAA
ATTATTTAGGATACGTTATTTGAAAACATACGAAGATACTGTACTTATTA
TAAACAAAATGACTGCAAGCTCATCCACACCACCTTCAACACCTCGGAAA
GCTCATAAAGTTGTCTTGATTGGAGATTCACAATGTGGAAAGTCATCATT
ATTAAGAAGATACACAAGAAAAAGTTTTGAAGAGGTAAAGATAAGGTTTG
ATGTCTGATCGAATTAAATTTGATAAAAAGAAGAACAAAGCATACGAGAA
ATGCACCATTTCGTGAGGTTTGTTACTGGCAAAACATATTGGAGCAATCG
CATATTATGAATGTAGCAGTAAAGTAGAAGATACACCTGAAACGATAAAC
TCTTTATTTGAAACTGCAGCCATGGCGTCAACTGGAAGTCTTGGTAAAAT
CTCAAAAGAACTGGTTGCCAGAGATTCGCCAGCGTCACGCCGACAGACCC
ATTATCTTGGTTGGATGCAAAAGTGATCTGAAAGCTGACCAGAAACTTAC
AAATATCCACAAACGATTAGTGCTGTCAAGCCAGGCTCTGGAGAATACGA
CCATGTCAGACCATTATCTTTTGGAGAAGCGACTGTCTTCATTGTCTGCT
TTGACATCACCAAATCAACAACTTTAGAAAATATACAAAGAAAAATCTGG
GATACATCAGGATTATATGCCGACTGTATTTGATTCAGGATCCGCAGATA
TCGTCGCTGACCAGAATAATGATATCCAAGTTAACGAAAAAGATATCCAA
TAGAAATAATAAATCAACATATTTGAAATACCACATCAACTTGATAGAAC
CGTCAAAATTATTTAGGATACGTTATTTGAAAACATACGAAGATACTGTA
CTTATTATAAACAAAATGACTGCAAGCTCATCCACACCACCTTCAACACC
TCGGAAAGCTCATAAAGTTGTCTTGATTGGAGATTCACAATGTGGAAAGT
CATCATTATTAAGAAGATACACAAGAAAAAGTTTTGAAGAGGTAAAGATA
AGGTTTGATGTCTGATCGAATTAAATTTGATAAAAAGAAGAACAAAGCAT
ACGAGAAATGCACCATTTCGTGAGGTTTGTTACTGGCAAAACATATTGGA
GCAATCGCATATTATGAATGTAGCAGTAAAGTAGAAGATACACCTGAAAC
GATAAACTCTTTATTTGAAACTGCAGCCATGGCGTCAACTGGAAGTCTTG
GTAAAATCTCAAAAGAACTGGTTGCCAGAGATTCGCCAGCGTCACGCCGA
CAGACCCATTATCTTGGTTGGATGCAAAAGTGATCTGAAAGCTGACCAGA
AACTTACAAATATCCACAAACGATTAGTGCTGTCAAGCCAGGCTCTGGAG
AATACGACCATGTCAGACCATTATCTTTTGGAGAAGCGACTGTCTTCATT
GTCTGCTTTGACATCACCAAATCAACAACTTTAGAAAATATACAAAGAAA
AATCTGGGATACATCAGGATTATATGCCGACTGTATTTGATTCAGGATCC
GCAGATATCGTCGCTGACCAGAATAATGATATCCAAGTTAACGAAAAAGA
TATCCAATAGAAATAATAAATCAACATATTTGAAATACCACATCAACTTG
ATAGAACCGTCAAAATTATTTAGGATACGTTATTTGAAAACATACGAAGA
TACTGTACTTATTATAAACAAAATGACTGCAAGCTCATCCACACCACCTT
CAACACCTCGGAAAGCTCATAAAGTTGTCTTGATTGGAGATTCACAATGT
GGAAAGTCATCATTATTAAGAAGATACACAAGAAAAAGTTTTGAAGAGGT
AAAGATAAGGTTTGATGTCTGATCGAATTAAATTTGATAAAAAGAAGAAC
AAAGCATACGAGAAATGCACCATTTCGTGAGGTTTGTTACTGGCAAAACA
TATTGGAGCAATCGCATATTATGAATGTAGCAGTAAAGTAGAAGATACAC
CTGAAACGATAAACTCTTTATTTGAAACTGCAGCCATGGCGTCAACTGGA
AGTCTTGGTAAAATCTCAAAAGAACTGGTTGCCAGAGATTCGCCAGCGTC
ACGCCGACAGACCCATTATCTTGGTTGGATGCAAAAGTGATCTGAAAGCT
GACCAGAAACTTACAAATATCCACAAACGATTAGTGCTGTCAAGCCAGGC
TCTGGAGAATACGACCATGTCAGACCATTATCTTTTGGAGAAGCGACTGT
CTTCATTGTCTGCTTTGACATCACCAAATCAACAACTTTAGAAAATATAC
AAAGAAAAATCTGGGATACATCAGGATTATATGCCGACTGTATTTGATTC
AGGATCCGCAGATATCGTCGCTGACCAGAATAATGATATCCAAGTTAACG
AAAAAGATATCCAATAGAAATAATAAATCAACATATTTGAAATACCACAT
CAACTTGATAGAACCGTCAAAATTATTTAGGATACGTTATTTGAAAACAT
ACGAAGATACTGTACTTATTATAAACAAAATGACTGCAAGCTCATCCACA
CCACCTTCAACACCTCGGAAAGCTCATAAAGTTGTCTTGATTGGAGATTC
ACAATGTGGAAAGTCATCATTATTAAGAAGATACACAAGAAAAAGTTTTG
AAGAGGTAAAGATAAGGTTTGATGTCTGATCGAATTAAATTTGATAAAAA
GAAGAACAAAGCATACGAGAAATGCACCATTTCGTGAGGTTTGTTACTGG
CAAAACATATTGGAGCAATCGCATATTATGAATGTAGCAGTAAAGTAGAA
GATACACCTGAAACGATAAACTCTTTATTTGAAACTGCAGCCATGGCGTC
AACTGGAAGTCTTGGTAAAATCTCAAAAGAACTGGTTGCCAGAGATTCGC
CAGCGTCACGCCGACAGACCCATTATCTTGGTTGGATGCAAAAGTGATCT
GAAAGCTGACCAGAAACTTACAAATATCCACAAACGATTAGTGCTGTCAA
GCCAGGCTCTGGAGAATACGACCATGTCAGACCATTATCTTTTGGAGAAG
CGACTGTCTTCATTGTCTGCTTTGACATCACCAAATCAACAACTTTAGAA
AATATACAAAGAAAAATCTGGGATACATCAGGATTATATGCCGACTGTAT
TTGATTCAGGATCCGCAGATATCGTCGCTGACCAGAATAATGATATCCAA
GTTAACGAAAAAGATATCCAATAGAAATAATAAATCAACATATTTGAAAT
ACCACATCAACTTGATAGAACCGTCAAAATTATTTAGGATACGTTATTTG
AAAACATACGAAGATACTGTACTTATTATAAACAAAATGACTGCAAGCTC
ATCCACACCACCTTCAACACCTCGGAAAGCTCATAAAGTTGTCTTGATTG
GAGATTCACAATGTGGAAAGTCATCATTATTAAGAAGATACACAAGAAAA
AGTTTTGAAGAGGTAAAGATAAGGTTTGATGTCTGATCGAATTAAATTTG
ATAAAAAGAAGAACAAAGCATACGAGAAATGCACCATTTCGTGAGGTTTG
TTACTGGCAAAACATATTGGAGCAATCGCATATTATGAATGTAGCAGTAA
AGTAGAAGATACACCTGAAACGATAAACTCTTTATTTGAAACTGCAGCCA
TGGCGTCAACTGGAAGTCTTGGTAAAATCTCAAAAGAACTGGTTGCCAGA
GATTCGCCAGCGTCACGCCGACAGACCCATTATCTTGGTTGGATGCAAAA
GTGATCTGAAAGCTGACCAGAAACTTACAAATATCCACAAACGATTAGTG
CTGTCAAGCCAGGCTCTGGAGAATACGACCATGTCAGACCATTATCTTTT
GGAGAAGCGACTGTCTTCATTGTCTGCTTTGACATCACCAAATCAACAAC
TTTAGAAAATATACAAAGAAAAATCTGGGATACATCAGGATTATATGCCG
ACTGTATTTGATTCAGGATCCGCAGATATCGTCGCTGACCAGAATAATGA
TATCCAAGTTAACGAAAAAGATATCCAATAGAAATAATAAATCAACATAT
TTGAAATACCACATCAACTTGATAGAACCGTCAAAATTATTTAGGATACG
TTATTTGAAAACATACGAAGATACTGTACTTATTATAAACAAAATGACTG
CAAGCTCATCCACACCACCTTCAACACCTCGGAAAGCTCATAAAGTTGTC
TTGATTGGAGATTCACAATGTGGAAAGTCATCATTATTAAGAAGATACAC
AAGAAAAAGTTTTGAAGAGGTAAAGATAAGGTTTGATGTCTGATCGAATT
AAATTTGATAAAAAGAAGAACAAAGCATACGAGAAATGCACCATTTCGTG
AGGTTTGTTACTGGCAAAACATATTGGAGCAATCGCATATTATGAATGTA
GCAGTAAAGTAGAAGATACACCTGAAACGATAAACTCTTTATTTGAAACT
GCAGCCATGGCGTCAACTGGAAGTCTTGGTAAAATCTCAAAAGAACTGGT
TGCCAGAGATTCGCCAGCGTCACGCCGACAGACCCATTATCTTGGTTGGA
TGCAAAAGTGATCTGAAAGCTGACCAGAAACTTACAAATATCCACAAACG
ATTAGTGCTGTCAAGCCAGGCTCTGGAGAATACGACCATGTCAGACCATT
ATCTTTTGGAGAAGCGACTGTCTTCATTGTCTGCTTTGACATCACCAAAT
CAACAACTTTAGAAAATATACAAAGAAAAATCTGGGATACATCAGGATTA
TATGCCGACTGTATTTGATTCAGGATCCGCAGATATCGTCGCTGACCAGA
ATAATGATATCCAAGTTAACGAAAAAGATATCCAATAGAAATAATAAATC
AACATATTTGAAATACCACATCAACTTGATAGAACCGTCAAAATTATTTA
GGATACGTTATTTGAAAACATACGAAGATACTGTACTTATTATAAACAAA
ATGACTGCAAGCTCATCCACACCACCTTCAACACCTCGGAAAGCTCATAA
AGTTGTCTTGATTGGAGATTCACAATGTGGAAAGTCATCATTATTAAGAA
GATACACAAGAAAAAGTTTTGAAGAGGTAAAGATAAGGTTTGATGTCTGA
TCGAATTAAATTTGATAAAAAGAAGAACAAAGCATACGAGAAATGCACCA
TTTCGTGAGGTTTGTTACTGGCAAAACATATTGGAGCAATCGCATATTAT
GAATGTAGCAGTAAAGTAGAAGATACACCTGAAACGATAAACTCTTTATT
TGAAACTGCAGCCATGGCGTCAACTGGAAGTCTTGGTAAAATCTCAAAAG
AACTGGTTGCCAGAGATTCGCCAGCGTCACGCCGACAGACCCATTATCTT
GGTTGGATGCAAAAGTGATCTGAAAGCTGACCAGAAACTTACAAATATCC
ACAAACGATTAGTGCTGTCAAGCCAGGCTCTGGAGAATACGACCATGTCA
GACCATTATCTTTTGGAGAAGCGACTGTCTTCATTGTCTGCTTTGACATC
ACCAAATCAACAACTTTAGAAAATATACAAAGAAAAATCTGGGATACATC
AGGATTATATGCCGACTGTATTTGATTCAGGATCCGCAGATATCGTCGCT
GACCAGAATAATGATATCCAAGTTAACGAAAAAGATATCCAATAGAAATA
ATAAATCAACATATTTGAAATACCACATCAACTTGATAGAACCGTCAAAA
TTATTTAGGATACGTTATTTGAAAACATACGAAGATACTGTACTTATTAT
AAACAAAATGACTGCAAGCTCATCCACACCACCTTCAACACCTCGGAAAG
CTCATAAAGTTGTCTTGATTGGAGATTCACAATGTGGAAAGTCATCATTA
TTAAGAAGATACACAAGAAAAAGTTTTGAAGAGGTAAAGATAAGGTTTGA
TGTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043364XLOC_043364Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069649-exon-scaffold_503-1575043694:255713..255735TCONS_00069649-exon-scaffold_503-1575043694:255713..255735Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1575043694:253297..253552TCONS_00069649-exon-scaffold_503-1575043694:253297..253552Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1575043694:252434..252508TCONS_00069649-exon-scaffold_503-1575043694:252434..252508Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1575043694:252360..252375TCONS_00069649-exon-scaffold_503-1575043694:252360..252375Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1575043694:251857..251966TCONS_00069649-exon-scaffold_503-1575043694:251857..251966Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1575043694:251150..251272TCONS_00069649-exon-scaffold_503-1575043694:251150..251272Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1575043694:250647..250791TCONS_00069649-exon-scaffold_503-1575043694:250647..250791Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1575043694:249810..250585TCONS_00069649-exon-scaffold_503-1575043694:249810..250585Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1510915933:255713..255735TCONS_00069649-exon-scaffold_503-1510915933:255713..255735Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1510915933:253297..253552TCONS_00069649-exon-scaffold_503-1510915933:253297..253552Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1510915933:252434..252508TCONS_00069649-exon-scaffold_503-1510915933:252434..252508Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1510915933:252360..252375TCONS_00069649-exon-scaffold_503-1510915933:252360..252375Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1510915933:251857..251966TCONS_00069649-exon-scaffold_503-1510915933:251857..251966Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1510915933:251150..251272TCONS_00069649-exon-scaffold_503-1510915933:251150..251272Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1510915933:250647..250791TCONS_00069649-exon-scaffold_503-1510915933:250647..250791Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1510915933:249810..250585TCONS_00069649-exon-scaffold_503-1510915933:249810..250585Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1491911889:255713..255735TCONS_00069649-exon-scaffold_503-1491911889:255713..255735Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1491911889:253297..253552TCONS_00069649-exon-scaffold_503-1491911889:253297..253552Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1491911889:252434..252508TCONS_00069649-exon-scaffold_503-1491911889:252434..252508Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1491911889:252360..252375TCONS_00069649-exon-scaffold_503-1491911889:252360..252375Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1491911889:251857..251966TCONS_00069649-exon-scaffold_503-1491911889:251857..251966Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1491911889:251150..251272TCONS_00069649-exon-scaffold_503-1491911889:251150..251272Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1491911889:250647..250791TCONS_00069649-exon-scaffold_503-1491911889:250647..250791Clytia hemisphaericaexon
TCONS_00069649-exon-scaffold_503-1491911889:249810..250585TCONS_00069649-exon-scaffold_503-1491911889:249810..250585Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069649-proteinTCONS_00069649-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:249810..255735 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.3765	5.86799	2.24483	1.12371	207.721	155.498	81.8419	77.0902	39.6301	44.6457	32.0298	27.7942	38.8138	28.3398	57.5642	50.146	23.0178	24.9196	9.98326	11.9143	6.9268	6.98514	11.0929	12.1212	9.48651	9.928	50.3875	43.4654	31.8164	27.5375
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR003578Small_GTPase_Rho
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00069649 vs. Swiss-Prot (Human)
Match: RND3 (Rho-related GTP-binding protein RhoE OS=Homo sapiens GN=RND3 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.048e-39
Identity = 72/188 (38.30%), Postives = 118/188 (62.77%), Query Frame = 1 
Query:  202 KVVLIGDSQCGKSSLLRRYTRKSFEEDYMPTVFDSGSADIVADQNNDIQVNIWDTSGSGEYDHVRPLSFGEATVFIVCFDITKSTTLENIQRKWLPEIRQRHADRPIILVGCKSDLKAD----QKLTNIHKRLVLSSQGLLLAKHIGAIAYYECSSKVEDTPETINSLFETAAMASTGSLGKISKEHR 753
            K+V++GDSQCGK++LL  + +  F E+Y+PTVF++ +A    D    I++++WDTSGS  YD+VRPLS+ ++   ++CFDI++  TL+++ +KW  EI++   +  ++LVGCKSDL+ D     +L+N  +  V   QG  +AK IGA  Y ECS+   +   ++  +F  A +A      K  K ++
Sbjct:   25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQR-IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN--SVRDIFHVATLACVNKTNKNVKRNK 209
The following BLAST results are available for this feature:
BLAST of TCONS_00069649 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RND34.048e-3938.30Rho-related GTP-binding protein RhoE OS=Homo sapie... [more]
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